pycom14g02880

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013943
Physical Location & Seq
Reverse (-)
2183896 .. 2184954
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGGCTTGCTACTCCCACCCACCGCCGTCCACCGACGCCGACGAAGCCAGCTCCGCCTCAATATCCGCCGTACATCCGGACATAATCCGAACCCACATCCTCACCCGCCTCGACGGGCCCACGCTCGCCTCCGCCGCCTGCACCTCCTCCGAACTCCAAGCGCTCGCCTCTCACCAGCCCCTCTGGGCCAACATCTGCCACTCCACGTGGCCTTCCACCTCCACGCCACGTGTCCGCCAAGTCATCTCCACGTTCCCCGCCGGCCCGCTCTCCTTCTTCTCCGACTCCTTCCCTCTCCTCGCCAATCTGGAACCCAACACCGCAACCGCAACCTCCGGTATCGCGCCAAAACACGATCAGGACCGTCCGTGCGAGTTAATCTCCGCCGTCGATATCTACCACCGCGGCAAGCTCATCCTGAGCAAGGTCATCGAGACGGAGACCGTGACCGGGTGGTTCCGGTGCTCGCCGTTCCGGATTGACCTGCTGGACCCCAAGGACGTGGTCCCCACCCAAATCAAGTACCCGGAGGGGCAGGAGGCCGACACCTGTCGCGACCTGGGGGACGATCTGACGCTGAACTGGATCATGATCGACCCGACCGGACGGCGGGCGATGAACCTGTCAAGCCACTCGCCGGTGTCGGTACAGCGGCACTGGCTAAGCGGCGAGGTGCACGCGCGGTTCGCGTCGATTCTGCCGGGGGAGAAAGGGACGGCGTCGGAGCACGTGCAGTGCGGGATATTGGTCACGTGCGGGGGGTCGGGGGGAGGGGAGATGCAGATAAGGGAGGTGAGCTTGCAGGTGGAGGACATGGACGGAATGCACTTGAACGGCAGGGAGGGTTTGGTAATTTTGGAGAGGGCGTTGAAGGGCAGAAAGGGAAGAAAGGGGACGAGGAGGGTGGCGGAAGGAAGGAAGAGGTACGCAGAGTACTTGGAGAGGAAGAAGGAAAGGAAGGAGAGGAAGCTGAGGACTGAAGGGACATTAGATACTTTGTGTGTGGCTTTTGGGGTATTGGGCTTTTTCGTCTTTTGGCTATTTATTTTGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

353

Amino Acids

38.85

Weight (kDa)

7.18

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36090
fragaria_vesca FvH4_6g19530
malus_domestica MD12G1031600.v1.1 MD14G1031900.v1.1
prunus_persica Prupe.7G100900_v2.0.a1
pyrus_communis pycom12g02940 pycom14g02880
rosa_chinensis RchiOBHm_Chr3g0474871
rosa_laevigata RLG00000023886
rosa_multiflora Rmu_sc0011900.1_g000011
rosa_roxburghii Rroxscaffold_6G00406780
rosa_rugosa Rorug03G0145100
rosa_samantha Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100
rosa_wichuraiana Rw3G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 793
Acc36I ACCTGC 2 cut(s) 492, 793
AccBSI CCGCTC 1 cut(s) 268
AccII CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
AccIII TCCGGA 2 cut(s) 76, 474
AclWI GGATC 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 999
AcvI CACGTG 4 cut(s) 207, 230, 730, 753
AcyI GRCGYC 2 cut(s) 36, 719
AfaI GTAC 5 cut(s) 72, 524, 648, 926, 935
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 4 cut(s) 424, 450, 609, 637
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 2 cut(s) 832, 871
AjiI CACGTC 1 cut(s) 502
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 4 cut(s) 51, 412, 798, 970
AluI AGCT 4 cut(s) 51, 412, 798, 970
Alw21I GWGCWC 3 cut(s) 467, 678, 729
Alw26I GTCTC 2 cut(s) 428, 434
Alw44I GTGCAC 1 cut(s) 674
AlwI GGATC 1 cut(s) 593
Aor13HI TCCGGA 2 cut(s) 76, 474
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 5 cut(s) 116, 186, 209, 262, 540
ApaI GGGCCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 674
AspLEI GCGC 3 cut(s) 163, 346, 682
AspS9I GGNCC 7 cut(s) 116, 117, 186, 263, 361, 490, 505
AsuC2I CCSGG 3 cut(s) 451, 527, 702
AsuHPI GGTGA 3 cut(s) 94, 164, 805
AvaII GGWCC 3 cut(s) 361, 490, 505
BaeGI GKGCMC 2 cut(s) 120, 678
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 4 cut(s) 207, 230, 730, 753
Bbv12I GWGCWC 3 cut(s) 467, 678, 729
BbvCI CCTCAGC 1 cut(s) 971
BceAI ACGGC 7 cut(s) 10, 53, 371, 454, 623, 732, 850
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 1 cut(s) 560
BcnI CCSGG 3 cut(s) 451, 527, 702
BcoDI GTCTC 2 cut(s) 428, 434
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 2 cut(s) 492, 793
BisI GCNGC 4 cut(s) 135, 406, 653, 667
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 4 cut(s) 136, 407, 654, 668
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 4 cut(s) 451, 527, 560, 702
Bme18I GGWCC 3 cut(s) 361, 490, 505
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 7 cut(s) 116, 117, 186, 263, 361, 490, 505
BmiI GGNNCC 5 cut(s) 118, 312, 458, 492, 507
BmrFI CCNGG 4 cut(s) 451, 527, 560, 702
BmsI GCATC 1 cut(s) 768
BoxI GACNNNNGTC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 2 cut(s) 419, 971
Bpu1102I GCTNAGC 1 cut(s) 662
BpuMI CCSGG 3 cut(s) 451, 527, 702
BsaAI YACGTR 4 cut(s) 207, 230, 730, 753
BsaBI GATNNNNATC 1 cut(s) 590
BsaHI GRCGYC 2 cut(s) 36, 719
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 403, 495, 559, 701
BsaWI WCCGGW 5 cut(s) 76, 335, 459, 474, 602
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 4 cut(s) 424, 450, 609, 637
Bse118I RCCGGY 2 cut(s) 260, 637
Bse1I ACTGG 2 cut(s) 587, 662
Bse8I GATNNNNATC 1 cut(s) 590
BseAI TCCGGA 2 cut(s) 76, 474
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 4 cut(s) 403, 495, 559, 701
BseGI GGATG 3 cut(s) 73, 96, 414
BseJI GATNNNNATC 1 cut(s) 590
BseLI CCNNNNNNNGG 4 cut(s) 424, 450, 609, 637
BseMII CTCAG 2 cut(s) 410, 962
BseNI ACTGG 2 cut(s) 587, 662
BseRI GAGGAG 3 cut(s) 136, 287, 913
BseSI GKGCMC 2 cut(s) 120, 678
BsgI GTGCAG 2 cut(s) 124, 752
Bsh1236I CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
Bsh1285I CGRYCG 1 cut(s) 603
BshFI GGCC 5 cut(s) 118, 188, 211, 264, 542
BsiEI CGRYCG 1 cut(s) 603
BsiHKAI GWGCWC 3 cut(s) 467, 678, 729
BslFI GGGAC 5 cut(s) 491, 578, 727, 907, 997
BslI CCNNNNNNNGG 4 cut(s) 424, 450, 609, 637
BsmAI GTCTC 2 cut(s) 428, 434
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 5 cut(s) 491, 578, 727, 907, 997
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 5 cut(s) 118, 188, 211, 264, 542
Bso31I GGTCTC 1 cut(s) 434
Bsp120I GGGCCC 1 cut(s) 116
Bsp1286I GDGCHC 4 cut(s) 120, 467, 678, 729
Bsp13I TCCGGA 2 cut(s) 76, 474
Bsp143I GATC 4 cut(s) 355, 568, 585, 591
Bsp1720I GCTNAGC 1 cut(s) 662
Bsp68I TCGCGA 1 cut(s) 555
BspANI GGCC 5 cut(s) 118, 188, 211, 264, 542
BspCNI CTCAG 2 cut(s) 411, 963
BspEI TCCGGA 2 cut(s) 76, 474
BspFNI CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 5 cut(s) 118, 312, 458, 492, 507
BspMI ACCTGC 2 cut(s) 492, 793
BspPI GGATC 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 260, 637
BsrI ACTGG 2 cut(s) 587, 662
BssAI RCCGGY 2 cut(s) 260, 637
BssECI CCNNGG 4 cut(s) 403, 495, 559, 701
BssMI GATC 4 cut(s) 355, 568, 585, 591
BssNI GRCGYC 2 cut(s) 36, 719
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 365, 445
Bst6I CTCTTC 1 cut(s) 914
BstACI GRCGYC 2 cut(s) 36, 719
BstBAI YACGTR 4 cut(s) 207, 230, 730, 753
BstDEI CTNAG 3 cut(s) 419, 662, 971
BstDSI CCRYGG 1 cut(s) 403
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 73, 96, 414
BstFNI CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 3 cut(s) 163, 346, 682
BstKTI GATC 4 cut(s) 358, 571, 588, 594
BstMAI GTCTC 2 cut(s) 428, 434
BstMBI GATC 4 cut(s) 355, 568, 585, 591
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 5 cut(s) 44, 53, 134, 658, 686
BstNI CCWGG 1 cut(s) 560
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 4 cut(s) 449, 525, 558, 700
BstSLI GKGCMC 2 cut(s) 120, 678
BstUI CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
BstXI CCANNNNNNTGG 1 cut(s) 502
BsuRI GGCC 5 cut(s) 118, 188, 211, 264, 542
BtgI CCRYGG 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 629
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 3 cut(s) 73, 96, 414
BtsI GCAGTG 1 cut(s) 740
BtsIMutI CAGTG 2 cut(s) 655, 740
BtuMI TCGCGA 1 cut(s) 555
BveI ACCTGC 2 cut(s) 492, 793
CciI TCATGA 1 cut(s) 588
CfoI GCGC 3 cut(s) 163, 346, 682
Cfr10I RCCGGY 2 cut(s) 260, 637
Cfr13I GGNCC 7 cut(s) 116, 117, 186, 263, 361, 490, 505
Cfr42I CCGCGG 1 cut(s) 406
CseI GACGC 4 cut(s) 44, 583, 678, 708
Csp6I GTAC 5 cut(s) 71, 523, 647, 925, 934
CviAII CATG 2 cut(s) 589, 814
CviQI GTAC 5 cut(s) 71, 523, 647, 925, 934
DdeI CTNAG 3 cut(s) 419, 662, 971
DpnI GATC 4 cut(s) 357, 570, 587, 593
DpnII GATC 4 cut(s) 355, 568, 585, 591
Eam1104I CTCTTC 1 cut(s) 914
EarI CTCTTC 1 cut(s) 914
EciI GGCGGA 6 cut(s) 43, 55, 121, 224, 373, 923
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 3 cut(s) 361, 490, 505
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 999
Eco72I CACGTG 4 cut(s) 207, 230, 730, 753
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 558
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 2 cut(s) 592, 817
FaiI YATR 3 cut(s) 83, 590, 815
FaqI GGGAC 5 cut(s) 491, 578, 727, 907, 997
FatI CATG 2 cut(s) 588, 813
FauI CCCGC 6 cut(s) 113, 265, 273, 603, 731, 749
Fnu4HI GCNGC 4 cut(s) 135, 406, 653, 667
FokI GGATG 3 cut(s) 60, 83, 401
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 135, 406, 653, 667
GlaI GCGC 3 cut(s) 162, 345, 681
GluI GCNGC 4 cut(s) 135, 406, 653, 667
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 5 cut(s) 118, 188, 211, 264, 542
HgaI GACGC 4 cut(s) 44, 583, 678, 708
HhaI GCGC 3 cut(s) 163, 346, 682
Hin1I GRCGYC 2 cut(s) 36, 719
Hin1II CATG 2 cut(s) 592, 817
Hin6I GCGC 3 cut(s) 161, 344, 680
HinP1I GCGC 3 cut(s) 161, 344, 680
HinfI GANTC 2 cut(s) 284, 694
HphI GGTGA 3 cut(s) 94, 164, 805
Hpy166II GTNNAC 2 cut(s) 30, 676
Hpy188I TCNGA 5 cut(s) 89, 151, 283, 573, 724
Hpy188III TCNNGA 8 cut(s) 77, 308, 359, 418, 433, 475, 554, 589
Hpy8I GTNNAC 2 cut(s) 30, 676
Hpy99I CGWCG 6 cut(s) 38, 44, 116, 392, 694, 724
HpyAV CCTTC 9 cut(s) 222, 283, 298, 865, 905, 909, 943, 952, 974
HpyCH4III ACNGT 2 cut(s) 365, 445
HpyCH4IV ACGT 6 cut(s) 206, 229, 251, 501, 729, 752
HpyCH4V TGCA 7 cut(s) 141, 676, 733, 781, 802, 826, 1053
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 53, 134, 658, 686
HpyF3I CTNAG 3 cut(s) 419, 662, 971
HpySE526I ACGT 6 cut(s) 206, 229, 251, 501, 729, 752
Hsp92I GRCGYC 2 cut(s) 36, 719
Hsp92II CATG 2 cut(s) 592, 817
HspAI GCGC 3 cut(s) 161, 344, 680
Kpn2I TCCGGA 2 cut(s) 76, 474
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 355, 568, 585, 591
LmnI GCTCC 2 cut(s) 56, 724
LweI GCATC 1 cut(s) 768
MaeII ACGT 6 cut(s) 206, 229, 251, 501, 729, 752
MaeIII GTNAC 2 cut(s) 445, 748
MalI GATC 4 cut(s) 357, 570, 587, 593
MbiI CCGCTC 1 cut(s) 268
MboI GATC 4 cut(s) 355, 568, 585, 591
MboII GAAGA 4 cut(s) 268, 897, 931, 958
MhlI GDGCHC 4 cut(s) 120, 467, 678, 729
MluCI AATT 1 cut(s) 852
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 306, 702
MroI TCCGGA 2 cut(s) 76, 474
MroNI GCCGGC 1 cut(s) 260
MseI TTAA 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 405, 652
MspR9I CCNGG 4 cut(s) 451, 527, 560, 702
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 1 cut(s) 560
MvnI CGCG 6 cut(s) 344, 405, 555, 680, 682, 689
MwoI GCNNNNNNNGC 5 cut(s) 44, 53, 134, 658, 686
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 451, 527, 702
NdeII GATC 4 cut(s) 355, 568, 585, 591
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 592, 817
NlaIV GGNNCC 5 cut(s) 118, 312, 458, 492, 507
NmuCI GTSAC 2 cut(s) 445, 748
NruI TCGCGA 1 cut(s) 555
PagI TCATGA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 793
PctI GAATGC 1 cut(s) 828
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 694
PflFI GACNNNGTC 2 cut(s) 503, 718
PkrI GCNGC 4 cut(s) 136, 407, 654, 668
PleI GAGTC 1 cut(s) 278
PmaCI CACGTG 4 cut(s) 207, 230, 730, 753
PmlI CACGTG 4 cut(s) 207, 230, 730, 753
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 4 cut(s) 207, 230, 730, 753
PshAI GACNNNNGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 558
PspCI CACGTG 4 cut(s) 207, 230, 730, 753
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 5 cut(s) 118, 312, 458, 492, 507
PspOMI GGGCCC 1 cut(s) 116
PspPI GGNCC 7 cut(s) 116, 117, 186, 263, 361, 490, 505
PsyI GACNNNGTC 2 cut(s) 503, 718
RruI TCGCGA 1 cut(s) 555
RsaI GTAC 5 cut(s) 72, 524, 648, 926, 935
RsaNI GTAC 5 cut(s) 71, 523, 647, 925, 934
SacII CCGCGG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 4 cut(s) 135, 406, 653, 667
Sau3AI GATC 4 cut(s) 355, 568, 585, 591
Sau96I GGNCC 7 cut(s) 116, 117, 186, 263, 361, 490, 505
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 451, 527, 560, 702
SduI GDGCHC 4 cut(s) 120, 467, 678, 729
SfaNI GCATC 1 cut(s) 768
Sfr303I CCGCGG 1 cut(s) 406
SgrAI CRCCGGYG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 406
SinI GGWCC 3 cut(s) 361, 490, 505
Sse9I AATT 1 cut(s) 852
StyD4I CCNGG 4 cut(s) 449, 525, 558, 700
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 365, 445
TaiI ACGT 6 cut(s) 209, 232, 254, 504, 732, 755
TaqI TCGA 5 cut(s) 111, 390, 432, 594, 692
TasI AATT 1 cut(s) 852
TatI WGTACW 1 cut(s) 933
TauI GCSGC 4 cut(s) 137, 408, 655, 669
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 2 cut(s) 662, 740
TseFI GTSAC 2 cut(s) 445, 748
Tsp45I GTSAC 2 cut(s) 445, 748
TspDTI ATGAA 1 cut(s) 632
TspGWI ACGGA 3 cut(s) 357, 452, 834
TspRI CASTG 2 cut(s) 662, 740
Tth111I GACNNNGTC 2 cut(s) 503, 718
VneI GTGCAC 1 cut(s) 674
VpaK11BI GGWCC 3 cut(s) 361, 490, 505
XagI CCTNNNNNAGG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.