Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014222

Physical Location & Seq

Genomic Coordinates Forward (+)

2978979 .. 2979488

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACGCCACAAGCGACTCTGGCGGCTTCCTCGGTTCCAACAACATTGGTAGTTTCGGTTATGGCATTGGTGTATCAGTTGGCGTCCTCCTCCTCATCACAACCATCACCCTTGCCTCCTACTTCTGCGCCAGAACTCAGCAGCCGCCTGCCCCACCCACACGCAGGAACGCTGGCGACGCCATGGATCTGGCCGGCGTGGAAAACTTTGTTGTGGACATAGGACTCGATGACAACACGATTCAAAGCTACCCGAAAATGCTCTACTCCGAGGCCAAGCTCCAAAAGAAAGACTCCACTGCCTCCTGCTGCTCCATATGTCTTGCCGACTACAAGAACAGCGACATGCTGCGGCTGCTGCCAGATTGTAGACACCTCTTCCACCTCAAGTGCATTGATCCGTGGCTGCGGTTGAATCCTACGTGTCCAGTCTGCAGAACGTCTCCAATCCCAACGCCCTTGTCAACTCCTCTGGCCGAGGTGGTTCCATTGGCTAGCAGGCGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

18.28

Weight (kDa)

6.69

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	99 - 146	2.2e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	103 - 146	3.6e-13	Ring finger domain
zf-RING_11	PF17123	104 - 132	7.1e-11	RING-like zinc finger
zf-C3HC4	PF00097	104 - 145	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	104 - 145	6.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35910
fragaria_vesca	FvH4_6g20630
malus_domestica	MD12G1042400.v1.1 MD14G1041600.v1.1
prunus_persica	Prupe.7G092500_v2.0.a1
pyrus_communis	pycom14g03530
rosa_chinensis	RchiOBHm_Chr3g0476521
rosa_laevigata	RLG00000023765
rosa_multiflora	Rmu_sc0004556.1_g000005 Rmu_sc0015190.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405260
rosa_rugosa	Rorug03G0154500
rosa_samantha	Rh3AG205600 Rh3BG238000 Rh3CG231800 Rh3DG231700
rosa_wichuraiana	Rw3G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	4 cut(s)	24, 146, 352, 409
AclWI	GGATC	2 cut(s)	195, 392
AcoI	YGGCCR	2 cut(s)	192, 474
AcyI	GRCGYC	2 cut(s)	84, 180
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	245, 415
AluBI	AGCT	2 cut(s)	249, 280
AluI	AGCT	2 cut(s)	249, 280
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	195, 392
AoxI	GGCC	3 cut(s)	192, 273, 474
ApeKI	GCWGC	6 cut(s)	142, 309, 349, 355, 358, 406
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	494
BbvI	GCAGC	6 cut(s)	154, 296, 336, 342, 345, 393
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	9 cut(s)	25, 143, 146, 310, 350, 353, 356, 359, 407
BlsI	GCNGC	9 cut(s)	26, 144, 147, 311, 351, 354, 357, 360, 408
BmiI	GGNNCC	2 cut(s)	37, 486
BmtI	GCTAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	84, 180
BsaJI	CCNNGG	5 cut(s)	31, 183, 270, 401, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	428
BseDI	CCNNGG	5 cut(s)	31, 183, 270, 401, 477
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	3 cut(s)	80, 83, 459
BseXI	GCAGC	6 cut(s)	154, 296, 336, 342, 345, 393
BshFI	GGCC	3 cut(s)	194, 275, 476
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	447
BsmBI	CGTCTC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	194, 275, 476
Bsp143I	GATC	2 cut(s)	187, 397
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	4 cut(s)	24, 146, 352, 409
BspANI	GGCC	3 cut(s)	194, 275, 476
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	37, 486
BspMAI	CTGCAG	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	195, 392
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	5 cut(s)	31, 183, 270, 401, 477
BssMI	GATC	2 cut(s)	187, 397
BssNI	GRCGYC	2 cut(s)	84, 180
BssT1I	CCWWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	2 cut(s)	84, 180
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	5 cut(s)	150, 175, 196, 496, 500
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	2 cut(s)	183, 401
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	190, 400
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	187, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 179, 355, 358
BstNSI	RCATGY	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	6 cut(s)	154, 296, 336, 342, 345, 393
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	194, 275, 476
BtgI	CCRYGG	2 cut(s)	183, 401
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	5 cut(s)	150, 175, 196, 496, 500
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	2 cut(s)	73, 188
CviAII	CATG	2 cut(s)	184, 346
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	189, 399
DpnII	GATC	2 cut(s)	187, 397
EaeI	YGGCCR	2 cut(s)	192, 474
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	2 cut(s)	187, 349
FaiI	YATR	6 cut(s)	63, 185, 221, 317, 319, 347
FatI	CATG	2 cut(s)	183, 345
FauNDI	CATATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	9 cut(s)	25, 143, 146, 310, 350, 353, 356, 359, 407
Fsp4HI	GCNGC	9 cut(s)	25, 143, 146, 310, 350, 353, 356, 359, 407
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	9 cut(s)	25, 143, 146, 310, 350, 353, 356, 359, 407
HaeIII	GGCC	3 cut(s)	194, 275, 476
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	2 cut(s)	73, 188
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	84, 180
Hin1II	CATG	2 cut(s)	187, 349
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	5 cut(s)	17, 225, 241, 293, 415
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	217, 371, 465
Hpy188I	TCNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	217, 371, 465
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	422, 440
HpyCH4V	TGCA	2 cut(s)	393, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 179, 355, 358
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	422, 440
Hsp92I	GRCGYC	2 cut(s)	84, 180
Hsp92II	CATG	2 cut(s)	187, 349
HspAI	GCGC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	187, 397
LmnI	GCTCC	2 cut(s)	285, 317
Lsp1109I	GCAGC	6 cut(s)	154, 296, 336, 342, 345, 393
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	422, 440
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	189, 399
MboI	GATC	2 cut(s)	187, 397
MboII	GAAGA	1 cut(s)	370
MflI	RGATCY	1 cut(s)	187
MlyI	GAGTC	3 cut(s)	11, 219, 287
MmeI	TCCRAC	1 cut(s)	63
MroNI	GCCGGC	1 cut(s)	194
MspI	CCGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	21, 179, 355, 358
NaeI	GCCGGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	2 cut(s)	187, 397
NgoMIV	GCCGGC	1 cut(s)	194
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	2 cut(s)	187, 349
NlaIV	GGNNCC	2 cut(s)	37, 486
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	241, 415
PkrI	GCNGC	9 cut(s)	26, 144, 147, 311, 351, 354, 357, 360, 408
PleI	GAGTC	3 cut(s)	11, 219, 287
PpsI	GAGTC	3 cut(s)	11, 219, 287
Ppu21I	YACGTR	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	37, 486
PstI	CTGCAG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	187
SatI	GCNGC	9 cut(s)	25, 143, 146, 310, 350, 353, 356, 359, 407
Sau3AI	GATC	2 cut(s)	187, 397
SchI	GAGTC	3 cut(s)	11, 219, 287
SetI	ASST	7 cut(s)	251, 282, 378, 387, 425, 443, 483
SfcI	CTRYAG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	4 cut(s)	24, 146, 352, 409
SspMI	CTAG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	2 cut(s)	425, 443
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	3 cut(s)	27, 148, 355
TfiI	GAWTC	2 cut(s)	241, 415
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	6 cut(s)	142, 309, 349, 355, 358, 406
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.