pycom14g03560

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013093
Physical Location & Seq
Forward (+)
2994690 .. 2995562
873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGCCATTCCATGAACCAAAACAAAAGTCAGAGATGAAAGGAATGAGAGGAAAGTTTCTCAAGAAACTGAAGTCCATCCCAACAATTGGCACTTTGAAACATGGCCTGCTCTTTCAGGTCAATCCCGCGGAAAAGTTCTCCAATCCGAACCATCAAACACCGTCTTTGCTTGTTCTCAAACACGAAGATGGCCAGAGGAAGAACAATCTCTCAGCGGAGCTTGTAGTTAAGGAATACAAAGATGAAGATATGGGATTGGGTTTTAATGTTGTCTATAAGGAGAATATTACACCACCCTCAATGGAAACCAAAGAAACAGGTGTGGAGGCTGACATATTTCATGATGCAGAGGATGATGATGAGGATGATGAACTTCCTTGTTTGTTAGATTTCGAAGAGAAGTGTCCGCCAGGAGGAGGCGATTCTGTCATTCTATATTCAACAAGCATGACAGGCGTTAGGAAAACATTCGAGGACTGCAAGGCAATCCGTTTTTTGCTGGAAAGTTTCAAAGTATCAGTGTATGAAAGGGACGTTTCGATGCACATGGAATTCAGGGAAGAGTTGTGGACGTTATTTGGCGGTAAAGTGATCGATCCGAGGCTTTTCATCAAGGGAAGGTACATTGGTGGAGCTGAAGAAGTTATAAGACTTCATGAGCAAGGCAGGCTGAAGAAGCTCTTAGAAGGAATCCCAATCAACCTGTCTAGCTCCCCATGCACCGGCTGTGCCAACGTGCGCTTCATTGTGTGCGTCAATTGCAATGGCAGTCGCAAAGTTTTCACAGATGGTGATCATGAACACGACGAGTTGTGCGTTAGATGTCCGGAGTGCAACGAAAATGGTTTGACTAAGTGCTCCATCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

291

Amino Acids

32.74

Weight (kDa)

5.48

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 143 - 209 6e-11 Glutaredoxin
GRXCR1-2_C PF23733 240 - 290 3.8e-15 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11773 AT3G11773 AT5G06470
fragaria_vesca FvH4_6g20660
malus_domestica MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica Prupe.7G092000_v2.0.a1
pyrus_communis pycom14g03560
rosa_chinensis RchiOBHm_Chr3g0476541
rosa_laevigata RLG00000023763
rosa_multiflora Rmu_sc0004556.1_g000002
rosa_roxburghii Rroxscaffold_6G00405240
rosa_rugosa Rorug03G0154700
rosa_samantha Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana Rw3G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 1 cut(s) 128
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 5 cut(s) 126, 128, 215, 407, 582
AclWI GGATC 1 cut(s) 590
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 3 cut(s) 89, 657, 692
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 4 cut(s) 86, 413, 416, 722
AgsI TTSAA 3 cut(s) 97, 441, 511
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 4 cut(s) 220, 635, 679, 711
AluI AGCT 4 cut(s) 220, 635, 679, 711
Alw21I GWGCWC 1 cut(s) 860
AlwI GGATC 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 2 cut(s) 103, 190
ApeKI GCWGC 1 cut(s) 867
ApoI RAATTY 1 cut(s) 551
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 741
AsuHPI GGTGA 1 cut(s) 803
AsuII TTCGAA 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BalI TGGCCA 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 854
BccI CCATC 5 cut(s) 83, 159, 182, 782, 869
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 793
BfaI CTAG 1 cut(s) 708
BisI GCNGC 1 cut(s) 868
BlsI GCNGC 1 cut(s) 869
Bme1390I CCNGG 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 334, 531
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 2 cut(s) 126, 599
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 413, 416, 722
Bse118I RCCGGY 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 769
Bse8I GATNNNNATC 1 cut(s) 792
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 411
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 126, 599
BseGI GGATG 3 cut(s) 75, 358, 370
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 4 cut(s) 86, 413, 416, 722
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 854
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 105, 192
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 860
BsiSI CCGG 2 cut(s) 723, 827
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 4 cut(s) 86, 413, 416, 722
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 2 cut(s) 105, 192
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 860
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 3 cut(s) 591, 595, 793
BspACI CCGC 5 cut(s) 126, 128, 215, 407, 582
BspANI GGCC 2 cut(s) 105, 192
BspCNI CTCAG 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 3 cut(s) 340, 655, 796
BspPI GGATC 1 cut(s) 590
BspT104I TTCGAA 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 769
BsrFI RCCGGY 1 cut(s) 722
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 126, 599
BssMI GATC 3 cut(s) 591, 595, 793
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 390, 555
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 107, 668
BstDEI CTNAG 3 cut(s) 211, 682, 852
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 3 cut(s) 75, 358, 370
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 3 cut(s) 594, 598, 796
BstMBI GATC 3 cut(s) 591, 595, 793
BstMWI GCNNNNNNNGC 6 cut(s) 453, 667, 676, 717, 759, 864
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 854
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 2 cut(s) 105, 192
BsuTUI ATCGAT 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 3 cut(s) 75, 358, 370
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 2 cut(s) 107, 668
CciI TCATGA 3 cut(s) 340, 655, 796
CfoI GCGC 1 cut(s) 741
Cfr10I RCCGGY 1 cut(s) 722
Cfr42I CCGCGG 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 742
Csp6I GTAC 1 cut(s) 622
CviAII CATG 8 cut(s) 11, 101, 341, 448, 547, 656, 717, 797
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 3 cut(s) 211, 682, 852
DpnI GATC 3 cut(s) 593, 597, 795
DpnII GATC 3 cut(s) 591, 595, 793
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 390, 555
EarI CTCTTC 2 cut(s) 390, 555
EciI GGCGGA 1 cut(s) 396
Eco57I CTGAAG 3 cut(s) 89, 657, 692
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 409
FaeI CATG 8 cut(s) 14, 104, 344, 451, 550, 659, 720, 800
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 545
FatI CATG 8 cut(s) 10, 100, 340, 447, 546, 655, 716, 796
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 1 cut(s) 868
FokI GGATG 3 cut(s) 62, 365, 377
Fsp4HI GCNGC 1 cut(s) 868
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 740
GluI GCNGC 1 cut(s) 868
HaeIII GGCC 2 cut(s) 105, 192
HapII CCGG 2 cut(s) 723, 827
HgaI GACGC 1 cut(s) 742
HhaI GCGC 1 cut(s) 741
Hin1II CATG 8 cut(s) 14, 104, 344, 451, 550, 659, 720, 800
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HinfI GANTC 2 cut(s) 422, 690
HpaII CCGG 2 cut(s) 723, 827
HphI GGTGA 1 cut(s) 803
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 3 cut(s) 31, 147, 600
Hpy188III TCNNGA 5 cut(s) 61, 341, 656, 797, 827
Hpy8I GTNNAC 1 cut(s) 570
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 2 cut(s) 612, 680
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 3 cut(s) 534, 572, 735
HpyCH4V TGCA 6 cut(s) 347, 480, 544, 720, 762, 834
HpyF10VI GCNNNNNNNGC 6 cut(s) 453, 667, 676, 717, 759, 864
HpyF3I CTNAG 3 cut(s) 211, 682, 852
HpySE526I ACGT 3 cut(s) 534, 572, 735
Hsp92II CATG 8 cut(s) 14, 104, 344, 451, 550, 659, 720, 800
HspAI GCGC 1 cut(s) 739
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 793
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 3 cut(s) 591, 595, 793
LmnI GCTCC 4 cut(s) 217, 632, 716, 863
Lsp1109I GCAGC 1 cut(s) 854
LweI GCATC 2 cut(s) 334, 531
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 534, 572, 735
MalI GATC 3 cut(s) 593, 597, 795
MboI GATC 3 cut(s) 591, 595, 793
MboII GAAGA 7 cut(s) 197, 211, 257, 407, 572, 650, 685
MfeI CAATTG 2 cut(s) 84, 757
MhlI GDGCHC 1 cut(s) 860
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 84, 551, 757
MluNI TGGCCA 1 cut(s) 192
Mox20I TGGCCA 1 cut(s) 192
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 228, 264
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 128, 215
MspI CCGG 2 cut(s) 723, 827
MspR9I CCNGG 1 cut(s) 411
MunI CAATTG 2 cut(s) 84, 757
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 453, 667, 676, 717, 759, 864
NdeII GATC 3 cut(s) 591, 595, 793
NlaIII CATG 8 cut(s) 14, 104, 344, 451, 550, 659, 720, 800
NspV TTCGAA 1 cut(s) 393
PagI TCATGA 3 cut(s) 340, 655, 796
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 422, 690
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 1 cut(s) 869
PsiI TTATAA 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 186
SacII CCGCGG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 228, 264
SatI GCNGC 1 cut(s) 868
Sau3AI GATC 3 cut(s) 591, 595, 793
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 2 cut(s) 334, 531
Sfr303I CCGCGG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 393
SgrBI CCGCGG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 84, 551, 757
SsiI CCGC 5 cut(s) 126, 128, 215, 407, 582
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 3 cut(s) 537, 575, 738
TaqI TCGA 4 cut(s) 393, 471, 539, 594
TasI AATT 3 cut(s) 84, 551, 757
TfiI GAWTC 2 cut(s) 422, 690
Tru1I TTAA 2 cut(s) 228, 264
Tru9I TTAA 2 cut(s) 228, 264
TscAI CASTG 1 cut(s) 525
TseI GCWGC 1 cut(s) 867
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 525
Van91I CCANNNNNTGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.