Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

5174931 .. 5176819

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAGATGCATATGTGGGGGCATGGATCCCAGTATAGAAAAGGGCCTGAATCTTTGAGAGGCACTCAACCAACAGGAATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGTTGCAGGAACAACATCGATCATCCGAGAGCAAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAGAGGAAACATGGAATCAAGCCCTTCATGTGTAGAAAATGTGGCAAGGCGTTTGCGGTGAGGGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAATGGGCATGCAGCTTATGGAATTGATGGCTTTGAAGAGGAAGATGAACCTGCTTCTGAAGTAGAGCAAGACAATGAGTCCATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

148

Amino Acids

16.98

Weight (kDa)

9.09

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	32 - 66	3.1e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	69 - 93	2.1e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	21, 34
AcuI	CTGAAG	2 cut(s)	145, 432
AgsI	TTSAA	2 cut(s)	173, 389
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	283, 368
AluI	AGCT	2 cut(s)	283, 368
AlwI	GGATC	2 cut(s)	21, 34
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	111
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bpu10I	CCTNAGC	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	26, 130, 323, 334
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	21, 34
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	26, 130, 323, 334
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	281, 363
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	4 cut(s)	29, 133, 326, 337
BstMBI	GATC	4 cut(s)	26, 130, 323, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 300
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	26, 323
BstYI	RGATCY	2 cut(s)	26, 323
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	46
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	281, 363
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	109
CviAII	CATG	6 cut(s)	23, 194, 211, 263, 362, 436
CviJI	RGCY	9 cut(s)	46, 88, 148, 205, 283, 303, 347, 368, 384
CviKI_1	RGCY	9 cut(s)	46, 88, 148, 205, 283, 303, 347, 368, 384
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	28, 132, 325, 336
DpnII	GATC	4 cut(s)	26, 130, 323, 334
DriI	GACNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	384
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	384
Eco57I	CTGAAG	2 cut(s)	145, 432
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	6 cut(s)	26, 197, 214, 266, 365, 439
FatI	CATG	6 cut(s)	22, 193, 210, 262, 361, 435
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	6 cut(s)	26, 197, 214, 266, 365, 439
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	50, 198, 431
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	138, 164, 307, 412
HpyAV	CCTTC	2 cut(s)	179, 217
HpyCH4V	TGCA	7 cut(s)	4, 10, 105, 117, 294, 365, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 300
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	26, 197, 214, 266, 365, 439
Kzo9I	GATC	4 cut(s)	26, 130, 323, 334
LpnPI	CCDG	7 cut(s)	44, 60, 60, 96, 103, 123, 417
Lsp1109I	GCAGC	1 cut(s)	377
MabI	ACCWGGT	1 cut(s)	109
MalI	GATC	4 cut(s)	28, 132, 325, 336
MboI	GATC	4 cut(s)	26, 130, 323, 334
MboII	GAAGA	3 cut(s)	280, 401, 407
MflI	RGATCY	2 cut(s)	26, 323
MluCI	AATT	2 cut(s)	271, 375
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	4 cut(s)	53, 180, 237, 385
Mph1103I	ATGCAT	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	312, 330
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	102, 300
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	4 cut(s)	26, 130, 323, 334
NlaIII	CATG	6 cut(s)	26, 197, 214, 266, 365, 439
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	50, 198
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	26, 323
SaqAI	TTAA	2 cut(s)	312, 330
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	26, 130, 323, 334
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	4 cut(s)	115, 285, 370, 406
SexAI	ACCWGGT	1 cut(s)	109
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	271, 375
SsiI	CCGC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	271, 375
TfiI	GAWTC	2 cut(s)	50, 198
Tru1I	TTAA	2 cut(s)	312, 330
Tru9I	TTAA	2 cut(s)	312, 330
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	199, 414
TspRI	CASTG	1 cut(s)	156
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.