Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009954

Physical Location & Seq

Genomic Coordinates Forward (+)

5841823 .. 5843834

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGAACTCCGGAATTCCCAGATCTGGGTAGGCATTGCTACGTCGCGGAGTGCCAGCAGATAGATTTCTTGCCCTTCACCTGCGATAGCTGCCATCAGGTATTTTGTTTGGAGCATAGAAGCTACATTAAGCATAATTGTCCGAACGGTGACAGAAACAATGTTACTGTTGTCATCTGTCCCCTCTGTGCCAAAGGAGTTCACCTGATTCCCGATGAAGATCCAAACATTACTTGGGAGAGACATGTTAACACTGATTGCGACCCTTCTAATTACGAGAAAGCCACAAAGAAGAAAAAATGTCCTGTCCCTGGCTGCAAGGAGGTCTTAACATTCTCCAACACAATCAAGTGCAGGGATTGCACGGTAGACCACTGTTTGAAGCACCGATTTGGATCTGATCACAAGTGTCCTGGACCCAAGAAACCAGAAGCAGGATTTCCCTTTATGGGCTACTTAAGTAGGAGTAGGAAAGAAGTGTCAAAACCAAGTCATGCTCCTGCCGCATCATCCCCGAAGTGGGGTAGCTTTCTTACTGCAGCTTCATCTTTTCGAGCCTCAGCTGAAGCAAGTGTTGCAAAACTGAGTAGCGAACTTAGCCAAAAGTGGCAGATGGCAAAGGATGGAACGGGGCCAAGCAGCAGCAGCAGTGGGAGTAGAAGCGGGCAGGTTGAGGTGTGTCCTCAGTGCGGTGCTAAGTTTCCCTCAGTCACCACACTAGTAGACCATGTAAAAAAGGTCCATGAGAAAGGTGGCAACCGAGCTGCTGGGGTGAAGAAAGTAACAATTGATGCCTGCCCAAAATGTAGCAAAGGATTTCGTGATCGATCAGCACTTGTAGAACACGTTGAGAGATCGATCACGGTGGTACTTCAAGAGCATAGGTATCATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1 zf-C2H2 zf-C2H2_4

Protein Analysis

300

Amino Acids

33.02

Weight (kDa)

8.85

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	13 - 49	1.2e-13	AN1-like Zinc finger
zf-C2H2_ZFAND2	PF25403	56 - 94	6.5e-19	ZFAND2A/B-like C2H2 zinc finger
zf-AN1	PF01428	101 - 142	1.5e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41835 AT3G57480 AT3G57480
fragaria_vesca	FvH4_6g23600
malus_domestica	MD12G1077300.v1.1 MD14G1070700.v1.1
prunus_persica	Prupe.7G063400_v2.0.a1 Prupe.7G063600_v2.0.a1
pyrus_communis	pycom12g06240 pycom14g06000
rosa_chinensis	RchiOBHm_Chr3g0481751
rosa_laevigata	RLG00000023381
rosa_multiflora	Rmu_ssc0000267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00399850 Rroxscaffold_6G00400210
rosa_rugosa	Rorug03G0193900
rosa_samantha	Rh3AG244600 Rh3BG280000 Rh3CG275000 Rh3DG271800
rosa_wichuraiana	Rw3G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	2 cut(s)	89, 658
AccI	GTMKAC	2 cut(s)	369, 723
AccII	CGCG	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	4 cut(s)	47, 504, 663, 690
AclWI	GGATC	2 cut(s)	215, 403
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 434, 449, 519, 520, 521, 689
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	2 cut(s)	244, 844
AgsI	TTSAA	2 cut(s)	382, 875
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	310, 412
AluBI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 764
AluI	AGCT	6 cut(s)	90, 123, 528, 542, 563, 764
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	215, 403
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	7 cut(s)	90, 315, 539, 639, 642, 645, 764
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	416, 632, 739
AsuHPI	GGTGA	5 cut(s)	70, 161, 194, 703, 784
AvaII	GGWCC	2 cut(s)	416, 739
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	7 cut(s)	77, 302, 551, 651, 654, 657, 751
BccI	CCATC	3 cut(s)	102, 607, 617
BciT130I	CCWGG	2 cut(s)	312, 414
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	457
BfuAI	ACCTGC	2 cut(s)	89, 658
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	8 cut(s)	91, 316, 504, 540, 640, 643, 646, 765
BlsI	GCNGC	8 cut(s)	92, 317, 505, 541, 641, 644, 647, 766
Bme1390I	CCNGG	2 cut(s)	312, 414
Bme18I	GGWCC	2 cut(s)	416, 739
BmgT120I	GGNCC	3 cut(s)	416, 632, 739
BmiI	GGNNCC	2 cut(s)	418, 633
BmrFI	CCNGG	2 cut(s)	312, 414
BmsI	GCATC	2 cut(s)	515, 781
Bpu10I	CCTNAGC	1 cut(s)	559
Bsa29I	ATCGAT	2 cut(s)	826, 857
BsaBI	GATNNNNATC	2 cut(s)	219, 394
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 434, 449, 519, 520, 521, 689
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	2 cut(s)	219, 394
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	312, 414
BseCI	ATCGAT	2 cut(s)	826, 857
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	509, 628
BseJI	GATNNNNATC	2 cut(s)	219, 394
BseLI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 434, 449, 519, 520, 521, 689
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	573, 575, 698, 720
BseXI	GCAGC	7 cut(s)	77, 302, 551, 651, 654, 657, 751
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	634
BshVI	ATCGAT	2 cut(s)	826, 857
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	165, 293
BslI	CCNNNNNNNGG	9 cut(s)	25, 26, 311, 434, 449, 519, 520, 521, 689
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	165, 293
BsnI	GGCC	1 cut(s)	634
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
BspACI	CCGC	4 cut(s)	47, 504, 663, 690
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	4 cut(s)	572, 576, 697, 719
BspDI	ATCGAT	2 cut(s)	826, 857
BspEI	TCCGGA	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	418, 633
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	2 cut(s)	89, 658
BspPI	GGATC	2 cut(s)	215, 403
BspTI	CTTAAG	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
Bst2UI	CCWGG	2 cut(s)	312, 414
Bst4CI	ACNGT	5 cut(s)	149, 169, 367, 377, 865
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	360, 575
BstC8I	GCNNGC	3 cut(s)	56, 665, 796
BstDEI	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
BstF5I	GGATG	2 cut(s)	509, 628
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	8 cut(s)	25, 223, 398, 403, 826, 830, 857, 861
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 645
BstNI	CCWGG	2 cut(s)	312, 414
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	310, 412
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	7 cut(s)	77, 302, 551, 651, 654, 657, 751
BstX2I	RGATCY	3 cut(s)	22, 220, 395
BstYI	RGATCY	3 cut(s)	22, 220, 395
Bsu15I	ATCGAT	2 cut(s)	826, 857
BsuRI	GGCC	1 cut(s)	634
BsuTUI	ATCGAT	2 cut(s)	826, 857
BtsCI	GGATG	2 cut(s)	509, 628
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	4 cut(s)	252, 373, 655, 692
BveI	ACCTGC	2 cut(s)	89, 658
Cac8I	GCNNGC	3 cut(s)	56, 665, 796
Cfr13I	GGNCC	3 cut(s)	416, 632, 739
ClaI	ATCGAT	2 cut(s)	826, 857
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	4 cut(s)	245, 494, 728, 743
CviQI	GTAC	1 cut(s)	869
DdeI	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
DpnI	GATC	8 cut(s)	24, 222, 397, 402, 825, 829, 856, 860
DpnII	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
Eco47I	GGWCC	2 cut(s)	416, 739
Eco57I	CTGAAG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	310, 412
FaeI	CATG	4 cut(s)	248, 497, 731, 746
FaiI	YATR	8 cut(s)	117, 135, 246, 449, 495, 729, 744, 882
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	165, 293
FatI	CATG	4 cut(s)	244, 493, 727, 742
FauI	CCCGC	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	2 cut(s)	369, 723
Fnu4HI	GCNGC	8 cut(s)	91, 316, 504, 540, 640, 643, 646, 765
FokI	GGATG	2 cut(s)	496, 635
Fsp4HI	GCNGC	8 cut(s)	91, 316, 504, 540, 640, 643, 646, 765
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	8 cut(s)	91, 316, 504, 540, 640, 643, 646, 765
GsaI	CCCAGC	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	4 cut(s)	248, 497, 731, 746
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	208
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	5 cut(s)	70, 161, 194, 703, 784
Hpy166II	GTNNAC	4 cut(s)	202, 250, 370, 724
Hpy188I	TCNGA	2 cut(s)	144, 400
Hpy188III	TCNNGA	4 cut(s)	11, 212, 821, 875
Hpy8I	GTNNAC	4 cut(s)	202, 250, 370, 724
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	85, 276
HpyCH4III	ACNGT	5 cut(s)	149, 169, 367, 377, 865
HpyCH4IV	ACGT	2 cut(s)	42, 846
HpyCH4V	TGCA	5 cut(s)	318, 354, 363, 539, 578
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 645
HpyF3I	CTNAG	6 cut(s)	559, 584, 596, 684, 696, 706
HpySE526I	ACGT	2 cut(s)	42, 846
Hsp92II	CATG	4 cut(s)	248, 497, 731, 746
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
LmnI	GCTCC	2 cut(s)	112, 502
Lsp1109I	GCAGC	7 cut(s)	77, 302, 551, 651, 654, 657, 751
LweI	GCATC	2 cut(s)	515, 781
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	2 cut(s)	42, 846
MaeIII	GTNAC	4 cut(s)	149, 163, 709, 781
MalI	GATC	8 cut(s)	24, 222, 397, 402, 825, 829, 856, 860
MboI	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
MboII	GAAGA	3 cut(s)	230, 304, 787
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	3 cut(s)	22, 220, 395
MluCI	AATT	4 cut(s)	14, 136, 271, 786
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	194, 316, 568, 667, 693, 715
MroI	TCCGGA	1 cut(s)	10
MseI	TTAA	4 cut(s)	129, 249, 329, 458
MspA1I	CMGCKG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	312, 414
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	2 cut(s)	312, 414
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	6 cut(s)	90, 360, 503, 575, 597, 645
NdeII	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
NlaIII	CATG	4 cut(s)	248, 497, 731, 746
NlaIV	GGNNCC	2 cut(s)	418, 633
NmuCI	GTSAC	2 cut(s)	149, 709
NspI	RCATGY	1 cut(s)	248
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	8 cut(s)	92, 317, 505, 541, 641, 644, 647, 766
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	310, 412
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	2 cut(s)	310, 412
PspN4I	GGNNCC	2 cut(s)	418, 633
PspPI	GGNCC	3 cut(s)	416, 632, 739
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	3 cut(s)	22, 220, 395
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
SaqAI	TTAA	4 cut(s)	129, 249, 329, 458
SatI	GCNGC	8 cut(s)	91, 316, 504, 540, 640, 643, 646, 765
Sau3AI	GATC	8 cut(s)	22, 220, 395, 400, 823, 827, 854, 858
Sau96I	GGNCC	3 cut(s)	416, 632, 739
ScrFI	CCNGG	2 cut(s)	312, 414
SfaNI	GCATC	2 cut(s)	515, 781
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	416, 739
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
SpeI	ACTAGT	1 cut(s)	718
Sse9I	AATT	4 cut(s)	14, 136, 271, 786
SsiI	CCGC	4 cut(s)	47, 504, 663, 690
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	310, 412
TaaI	ACNGT	5 cut(s)	149, 169, 367, 377, 865
TaiI	ACGT	2 cut(s)	45, 849
TaqI	TCGA	3 cut(s)	553, 826, 857
TasI	AATT	4 cut(s)	14, 136, 271, 786
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	4 cut(s)	129, 249, 329, 458
Tru9I	TTAA	4 cut(s)	129, 249, 329, 458
TscAI	CASTG	4 cut(s)	259, 380, 655, 692
TseFI	GTSAC	2 cut(s)	149, 709
TseI	GCWGC	7 cut(s)	90, 315, 539, 639, 642, 645, 764
Tsp45I	GTSAC	2 cut(s)	149, 709
TspDTI	ATGAA	2 cut(s)	231, 534
TspRI	CASTG	4 cut(s)	259, 380, 655, 692
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	416, 739
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	2 cut(s)	231, 749
XmiI	GTMKAC	2 cut(s)	369, 723
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.