pycom14g07800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015337
Physical Location & Seq
Reverse (-)
8099797 .. 8101790
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGCTATTTCCACCCCACAAGTCAAGTCACATTGATGCTTTATGCGCTTCTTCAGCACAAAACATTGCAAAACATAAAAGAATGGGCCAAACCCTCAAGACATTGGCTCCTAGAACGGAGGAAAATAAGATTAAAGAAATTAGTCCCATAATCGAGAAGTTCTATGACACTCATTTTGCAGCTGGCAGTGGCACCGGGGAACCAACCGCAACTGAATTCTACAGAGCCGTATGCGAAGCTGTCGAAAAAATCAACAAACAGCTCGGTAGCACCCAATTTTGCGTCCCAGAGGAAAGCAAACTCAAGAAAGCATACGAACAACACCACCAAGGCAAGGGAAGCTCTCTGAAAAGGGAAGAGTTTCAAAAGATTTTACAAGAAATACTTGTGGGTACAGGATTTACCGGCGTTGGAGCCAAAGACACACTCATATACATGTTTGGTGTTCCACTCACCGCTTTCCTCATCAAGCAACGAATCATGCCTCGTGCAATTCCTAATGCTTTCTTCATTCCAGCCATCACGTCTGCTACTGCCTTCGTGCTCGCTAAACTTAACAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.8

Weight (kDa)

9.42

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 50 - 188 6.7e-57 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 2 cut(s) 207, 456
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 1 cut(s) 365
AjiI CACGTC 1 cut(s) 525
AluBI AGCT 4 cut(s) 182, 239, 262, 342
AluI AGCT 4 cut(s) 182, 239, 262, 342
Alw21I GWGCWC 1 cut(s) 546
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 445
BanI GGYRCC 1 cut(s) 191
BauI CACGAG 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 527
BceAI ACGGC 1 cut(s) 212
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 196
BmgBI CACGTC 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 4 cut(s) 108, 193, 201, 415
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 80, 287
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 195, 328
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 195, 328
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 2 cut(s) 195, 405
BslFI GGGAC 2 cut(s) 129, 269
BslI CCNNNNNNNGG 1 cut(s) 334
BsmFI GGGAC 2 cut(s) 129, 269
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 546
BspACI CCGC 2 cut(s) 207, 456
BspANI GGCC 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 108, 193, 201, 415
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 195, 328
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 184, 546
BstHHI GCGC 1 cut(s) 47
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 339
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 184, 546
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 393
CviAII CATG 2 cut(s) 436, 481
CviJI RGCY 9 cut(s) 87, 107, 182, 227, 239, 262, 342, 416, 518
CviKI_1 RGCY 9 cut(s) 87, 107, 182, 227, 239, 262, 342, 416, 518
CviQI GTAC 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 439, 484
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 129, 269
FatI CATG 2 cut(s) 435, 480
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 195, 405
HgaI GACGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 439, 484
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 1 cut(s) 477
HpaII CCGG 2 cut(s) 195, 405
HphI GGTGA 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 97, 154, 304
HpyAV CCTTC 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 3 cut(s) 68, 179, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 339
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 2 cut(s) 439, 484
HspAI GCGC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 112, 413
LpnPI CCDG 6 cut(s) 168, 208, 300, 381, 418, 528
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 3 cut(s) 42, 368, 499
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 4 cut(s) 138, 215, 275, 492
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 5 cut(s) 104, 112, 283, 473, 495
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 132, 555
MslI CAYNNNNRTG 2 cut(s) 33, 434
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 195, 405
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 339
NciI CCSGG 1 cut(s) 196
NlaIII CATG 2 cut(s) 439, 484
NlaIV GGNNCC 4 cut(s) 108, 193, 201, 415
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 439
PciI ACATGT 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 1 cut(s) 181
PscI ACATGT 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 108, 193, 201, 415
PspPI GGNCC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 2 cut(s) 33, 434
SaqAI TTAA 2 cut(s) 132, 555
SatI GCNGC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 546
SetI ASST 5 cut(s) 184, 241, 264, 344, 527
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 33, 434
SmlI CTYRAG 2 cut(s) 95, 302
SmoI CTYRAG 2 cut(s) 95, 302
Sse9I AATT 4 cut(s) 138, 215, 275, 492
SsiI CCGC 2 cut(s) 207, 456
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 328
TaiI ACGT 1 cut(s) 527
TaqI TCGA 2 cut(s) 153, 243
TasI AATT 4 cut(s) 138, 215, 275, 492
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 2 cut(s) 132, 555
Tru9I TTAA 2 cut(s) 132, 555
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 499
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.