pycom14g10780

MIZ/SP-RING zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
13545027 .. 13550401
5375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10780.1

Sequence Viewer

Length: 1239 bp
ATGAGTGGAACAACGCTAACACCGCAGGCGGTCGGCAACTTTGTCAGTCTGAAAGGCGTTGGGCAGCAGCAACTCTCCGCTTCCCTCGTTAACTCCTACCGAGTTGCCGCCGTCGCTGAGCGCTTGGCAGCTCACGTCAAATCTGGCTATCGCGGCGAGGCCATGGAGTTCTTCAATCTCTGCCTTTCCCTTTCCAGAGGCATTGACTATGCCGTTGCAAACAATGAGGTTCCGGCGATTGCTCAAGATTTACCTGGGTTGTTGAAGCAGATATGCCAACGCAAGAGTGATAAGGTTTTGGAAGCTGCTATCATGGTGCTGATGATTTCTGTTAAGAATGCTTGTAGGACCGGATGGTTTTCGGATAAGGAGACTGAAGAGCTCTTTTTTCTAGCTAACGAGATAGGGAGTAGCTTTTGCAGCTTGGGGGATGTTAAAACTGGAGCTAGCTGTTCTCTTTCTGTTATAGACACAATTATGGAAAGGTTTTATCCAATGATGAAGATGGGCCAGATACTTGCCTCTCTAGAAGTCAAGTCTGGATATGGGGCGCATGTGCTTGATTTCCATATTTCGAAGAGTACACATTATTCCCCTCAAGAAAAAATTCGATTACTTGTAGCACAAACAGATAATATAGAGACATCTGCATGTATTATAAGTCCACCACAAGTGAACTTTCTGCTAAATGGAAAGGGAGTAGATAAAAGGATCAATGTTACAATGGATACTGGACCCCAGTTGCCTTCAGTTGTGACTGGAATGCTCAAGTTTGGATCAAATCTTCTGCAAGCTGTGGGCCAATTCAATGGTCATTATACCATAGTGGTTGCCTTTATGAGTATCACACCATCACCTGACACTCCAGTACTGAAAGATTATTCGCAGTTCACTGTGTCTCCGTCAGATTCAGATCCTGATTTAATTGAGGGGCCATCAAGAATTTCTCTCAATTGTCCCATAAGTTATACACGTATAAAAACTCCTGTCAAAGGTCATTTGTGCAAACATCTTCAGTGTTTCGACTTCAGTAATTACGTCAATATAAATTTAAGACGACCTTCGTGGCGCTGCCCCCACTGTAATCAGTATGTCTGCTATTTGGACCTCCGCGTTGATCAAAATATGGTTAAGGTCCTGAGAGAGGTAGGAGAGAATGTTGCCGAAGTAATAATCTCTATGGATGGATCATGGAAAGCTGGACTGGAGAATGATGATCGATCTAGGTCAAGCACATGA

Protein Analysis

413

Amino Acids

45.3

Weight (kDa)

7.05

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Nse PF11789 313 - 361 8.8e-06 Zinc-finger of the MIZ type in Nse subunit
zf-MIZ PF02891 315 - 363 1.6e-20 MIZ/SP-RING zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
AccII CGCG 2 cut(s) 153, 1113
AciI CCGC 6 cut(s) 23, 29, 78, 108, 153, 1111
AclWI GGATC 4 cut(s) 719, 784, 908, 1195
AcsI RAATTY 3 cut(s) 606, 942, 1048
AcuI CTGAAG 4 cut(s) 396, 732, 998, 1012
AfaI GTAC 2 cut(s) 583, 870
AfeI AGCGCT 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 992, 1144
AflIII ACRYGT 1 cut(s) 971
AgsI TTSAA 3 cut(s) 175, 265, 808
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 3 cut(s) 365, 635, 903
AlwI GGATC 4 cut(s) 719, 784, 908, 1195
AlwNI CAGNNNCTG 1 cut(s) 917
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 4 cut(s) 159, 508, 799, 932
ApeKI GCWGC 6 cut(s) 64, 67, 128, 305, 420, 1071
ApoI RAATTY 3 cut(s) 606, 942, 1048
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 3 cut(s) 123, 553, 1071
AspS9I GGNCC 7 cut(s) 348, 508, 734, 799, 932, 1105, 1135
AsuHPI GGTGA 1 cut(s) 846
AsuII TTCGAA 1 cut(s) 575
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 4 cut(s) 348, 734, 1105, 1135
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 6 cut(s) 76, 79, 140, 292, 432, 1058
BccI CCATC 5 cut(s) 348, 499, 859, 943, 1178
BceAI ACGGC 2 cut(s) 95, 197
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 1117
BcoDI GTCTC 3 cut(s) 365, 635, 903
BfaI CTAG 4 cut(s) 392, 447, 527, 1224
BfoI RGCGCY 2 cut(s) 124, 1072
BfuI GTATCC 1 cut(s) 721
BisI GCNGC 8 cut(s) 65, 68, 108, 129, 154, 306, 421, 1072
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 8 cut(s) 66, 69, 109, 130, 155, 307, 422, 1073
BmcAI AGTACT 1 cut(s) 870
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 4 cut(s) 348, 734, 1105, 1135
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 7 cut(s) 348, 508, 734, 799, 932, 1105, 1135
BmiI GGNNCC 3 cut(s) 231, 736, 933
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 733
BmtI GCTAGC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 733
BpmI CTGGAG 3 cut(s) 462, 849, 1226
Bpu1102I GCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 3 cut(s) 228, 582, 752
Bsa29I ATCGAT 1 cut(s) 1219
BsaAI YACGTR 1 cut(s) 974
BsaBI GATNNNNATC 1 cut(s) 912
BsaJI CCNNGG 2 cut(s) 162, 254
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 4 cut(s) 883, 913, 1143, 1173
Bsc4I CCNNNNNNNGG 2 cut(s) 992, 1144
Bse1I ACTGG 6 cut(s) 445, 736, 739, 763, 866, 1209
Bse8I GATNNNNATC 1 cut(s) 912
BseBI CCWGG 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 1219
BseDI CCNNGG 2 cut(s) 162, 254
BseGI GGATG 3 cut(s) 359, 436, 1189
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 2 cut(s) 992, 1144
BseMII CTCAG 2 cut(s) 108, 1130
BseNI ACTGG 6 cut(s) 445, 736, 739, 763, 866, 1209
BseXI GCAGC 6 cut(s) 76, 79, 140, 292, 432, 1058
Bsh1236I CGCG 2 cut(s) 153, 1113
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 161, 510, 801, 934
BshVI ATCGAT 1 cut(s) 1219
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 2 cut(s) 233, 351
BslFI GGGAC 1 cut(s) 942
BslI CCNNNNNNNGG 2 cut(s) 992, 1144
BsmAI GTCTC 3 cut(s) 365, 635, 903
BsmFI GGGAC 1 cut(s) 942
BsmI GAATGC 2 cut(s) 343, 768
BsnI GGCC 4 cut(s) 161, 510, 801, 934
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
Bsp1720I GCTNAGC 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 6 cut(s) 23, 29, 78, 108, 153, 1111
BspANI GGCC 4 cut(s) 161, 510, 801, 934
BspCNI CTCAG 2 cut(s) 109, 1131
BspDI ATCGAT 1 cut(s) 1219
BspFNI CGCG 2 cut(s) 153, 1113
BspLI GGNNCC 3 cut(s) 231, 736, 933
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 4 cut(s) 719, 784, 908, 1195
BspQI GCTCTTC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 575
BsrI ACTGG 6 cut(s) 445, 736, 739, 763, 866, 1209
BssECI CCNNGG 2 cut(s) 162, 254
BssMI GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 895, 1082
Bst6I CTCTTC 2 cut(s) 372, 572
BstBAI YACGTR 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 27, 448, 792
BstDEI CTNAG 2 cut(s) 117, 1139
BstDSI CCRYGG 1 cut(s) 162
BstENI CCTNNNNNAGG 2 cut(s) 990, 1142
BstF5I GGATG 3 cut(s) 359, 436, 1189
BstFNI CGCG 2 cut(s) 153, 1113
BstH2I RGCGCY 2 cut(s) 124, 1072
BstHHI GCGC 3 cut(s) 123, 553, 1071
BstKTI GATC 7 cut(s) 714, 779, 916, 1120, 1190, 1219, 1223
BstMAI GTCTC 3 cut(s) 365, 635, 903
BstMBI GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 4 cut(s) 22, 113, 153, 420
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 557, 654
BstSCI CCNGG 1 cut(s) 253
BstUI CGCG 2 cut(s) 153, 1113
BstV1I GCAGC 6 cut(s) 76, 79, 140, 292, 432, 1058
BstX2I RGATCY 1 cut(s) 913
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 913
Bsu15I ATCGAT 1 cut(s) 1219
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 4 cut(s) 161, 510, 801, 934
BsuTUI ATCGAT 1 cut(s) 1219
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 359, 436, 1189
BtsIMutI CAGTG 3 cut(s) 891, 1022, 1078
Cac8I GCNNGC 3 cut(s) 27, 448, 792
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 3 cut(s) 123, 553, 1071
Cfr13I GGNCC 7 cut(s) 348, 508, 734, 799, 932, 1105, 1135
ClaI ATCGAT 1 cut(s) 1219
Csp6I GTAC 2 cut(s) 582, 869
CviAII CATG 6 cut(s) 163, 313, 554, 651, 1191, 1236
CviQI GTAC 2 cut(s) 582, 869
DdeI CTNAG 2 cut(s) 117, 1139
DpnI GATC 7 cut(s) 713, 778, 915, 1119, 1189, 1218, 1222
DpnII GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
Eam1104I CTCTTC 2 cut(s) 372, 572
EarI CTCTTC 2 cut(s) 372, 572
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 4 cut(s) 348, 734, 1105, 1135
Eco47III AGCGCT 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 4 cut(s) 396, 732, 998, 1012
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 2 cut(s) 990, 1142
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 6 cut(s) 166, 316, 557, 654, 1194, 1239
FalI AAGNNNNNCTT 2 cut(s) 1045, 1077
FaqI GGGAC 1 cut(s) 942
FatI CATG 6 cut(s) 162, 312, 553, 650, 1190, 1235
FbaI TGATCA 1 cut(s) 1117
Fnu4HI GCNGC 8 cut(s) 65, 68, 108, 129, 154, 306, 421, 1072
FokI GGATG 3 cut(s) 366, 443, 1196
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 8 cut(s) 65, 68, 108, 129, 154, 306, 421, 1072
FspBI CTAG 4 cut(s) 392, 447, 527, 1224
GlaI GCGC 3 cut(s) 122, 552, 1070
GluI GCNGC 8 cut(s) 65, 68, 108, 129, 154, 306, 421, 1072
GsuI CTGGAG 3 cut(s) 462, 849, 1226
HaeII RGCGCY 2 cut(s) 124, 1072
HaeIII GGCC 4 cut(s) 161, 510, 801, 934
HapII CCGG 2 cut(s) 233, 351
HhaI GCGC 3 cut(s) 123, 553, 1071
Hin1II CATG 6 cut(s) 166, 316, 557, 654, 1194, 1239
Hin6I GCGC 3 cut(s) 121, 551, 1069
HinP1I GCGC 3 cut(s) 121, 551, 1069
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 908
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 2 cut(s) 233, 351
HphI GGTGA 1 cut(s) 846
Hpy166II GTNNAC 5 cut(s) 91, 584, 665, 676, 891
Hpy188I TCNGA 4 cut(s) 51, 364, 907, 913
Hpy188III TCNNGA 8 cut(s) 195, 245, 527, 540, 599, 917, 939, 1138
Hpy8I GTNNAC 5 cut(s) 91, 584, 665, 676, 891
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 756, 1071
HpyCH4III ACNGT 2 cut(s) 895, 1082
HpyCH4IV ACGT 3 cut(s) 135, 973, 1038
HpyCH4V TGCA 5 cut(s) 218, 420, 650, 790, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 113, 153, 420
HpyF3I CTNAG 2 cut(s) 117, 1139
HpySE526I ACGT 3 cut(s) 135, 973, 1038
Hsp92II CATG 6 cut(s) 166, 316, 557, 654, 1194, 1239
HspAI GCGC 3 cut(s) 121, 551, 1069
Ksp22I TGATCA 1 cut(s) 1117
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 6 cut(s) 76, 79, 140, 292, 432, 1058
MaeI CTAG 4 cut(s) 392, 447, 527, 1224
MaeII ACGT 3 cut(s) 135, 973, 1038
MaeIII GTNAC 2 cut(s) 718, 754
MalI GATC 7 cut(s) 713, 778, 915, 1119, 1189, 1218, 1222
MboI GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
MboII GAAGA 6 cut(s) 163, 389, 514, 589, 776, 1004
MfeI CAATTG 1 cut(s) 952
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 8 cut(s) 474, 606, 803, 924, 942, 952, 1033, 1048
MnlI CCTC 9 cut(s) 95, 151, 191, 220, 532, 606, 922, 1118, 1138
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 6 cut(s) 90, 333, 435, 923, 1052, 1131
MslI CAYNNNNRTG 2 cut(s) 476, 649
MspI CCGG 2 cut(s) 233, 351
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 952
Mva1269I GAATGC 2 cut(s) 343, 768
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 2 cut(s) 153, 1113
MwoI GCNNNNNNNGC 4 cut(s) 22, 113, 153, 420
NcoI CCATGG 1 cut(s) 162
NdeII GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 6 cut(s) 166, 316, 557, 654, 1194, 1239
NlaIV GGNNCC 3 cut(s) 231, 736, 933
NmuCI GTSAC 1 cut(s) 754
NspI RCATGY 2 cut(s) 557, 654
NspV TTCGAA 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 2 cut(s) 343, 768
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 1 cut(s) 908
PkrI GCNGC 8 cut(s) 66, 69, 109, 130, 155, 307, 422, 1073
Ppu21I YACGTR 1 cut(s) 974
PpuMI RGGWCCY 1 cut(s) 1135
PsiI TTATAA 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 231, 736, 933
PspPI GGNCC 7 cut(s) 348, 508, 734, 799, 932, 1105, 1135
PspPPI RGGWCCY 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 913
RsaI GTAC 2 cut(s) 583, 870
RsaNI GTAC 2 cut(s) 582, 869
RseI CAYNNNNRTG 2 cut(s) 476, 649
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 6 cut(s) 90, 333, 435, 923, 1052, 1131
SatI GCNGC 8 cut(s) 65, 68, 108, 129, 154, 306, 421, 1072
Sau3AI GATC 7 cut(s) 711, 776, 913, 1117, 1187, 1216, 1220
Sau96I GGNCC 7 cut(s) 348, 508, 734, 799, 932, 1105, 1135
ScaI AGTACT 1 cut(s) 870
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 4 cut(s) 348, 734, 1105, 1135
SmiMI CAYNNNNRTG 2 cut(s) 476, 649
SmlI CTYRAG 3 cut(s) 243, 597, 767
SmoI CTYRAG 3 cut(s) 243, 597, 767
Sse9I AATT 8 cut(s) 474, 606, 803, 924, 942, 952, 1033, 1048
SsiI CCGC 6 cut(s) 23, 29, 78, 108, 153, 1111
SspMI CTAG 4 cut(s) 392, 447, 527, 1224
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 895, 1082
TaiI ACGT 3 cut(s) 138, 976, 1041
TaqI TCGA 4 cut(s) 575, 610, 1023, 1219
TasI AATT 8 cut(s) 474, 606, 803, 924, 942, 952, 1033, 1048
TatI WGTACW 2 cut(s) 581, 868
TauI GCSGC 2 cut(s) 110, 156
TfiI GAWTC 1 cut(s) 908
Tru1I TTAA 6 cut(s) 90, 333, 435, 923, 1052, 1131
Tru9I TTAA 6 cut(s) 90, 333, 435, 923, 1052, 1131
TscAI CASTG 3 cut(s) 898, 1022, 1085
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 6 cut(s) 64, 67, 128, 305, 420, 1071
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 1 cut(s) 515
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 3 cut(s) 898, 1022, 1085
VpaK11BI GGWCC 4 cut(s) 348, 734, 1105, 1135
XagI CCTNNNNNAGG 2 cut(s) 990, 1142
XapI RAATTY 3 cut(s) 606, 942, 1048
XbaI TCTAGA 1 cut(s) 526
XceI RCATGY 2 cut(s) 557, 654
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 4 cut(s) 392, 447, 527, 1224
ZrmI AGTACT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.