Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377057.1

Orthogroup ID

OG0007854

Physical Location & Seq

Genomic Coordinates Forward (+)

501 .. 1135

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaccggaacaacgcttacaccgcaggcggcgagtaacttagtcagtctcaatattggtagcggcgccgggcagcaggtctcggcttcgttcgtcaactccttccgagtcaccgccgtcgccgaccggctgctcgctcacgtccagtctggttatcgcggcgatgccatggagttcttcaacctctgcctctctctttccagaggaattgactatgccgttgcgaacaatgaggttccggcgaaggcgtccgatttgcctgttctgttgagacagatatgccaaaggaaaaacaatgacgttttgctagctgctatcatggtgctgatgatatctgtgaagtactggatggttttcggagaaggagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009893 GO:0009987 GO:0010033 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0031323 GO:0031325 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051176 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

zf-MIZ

Protein Analysis

123

Amino Acids

13.23

Weight (kDa)

6.55

Isoelectric Point (pI)

23.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41580
fragaria_vesca	FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250
malus_domestica	MD06G1091800.v1.1 MD14G1112600.v1.1
prunus_persica	Prupe.5G107000_v2.0.a1 Prupe.5G107000_v2.0.a1
pyrus_communis	pycom06g08790 pycom14g10780
rosa_chinensis	RchiOBHm_Chr7g0196521
rosa_multiflora	Rmu_co8354373.1_g000001 Rmu_co8377057.1_g000001 Rmu_sc0013350.1_g000009 Rmu_sc0019310.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259230
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158500 Rh7BG160500 Rh7CG166900 Rh7DG159700
rosa_wichuraiana	Rw7G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	159
AciI	CCGC	5 cut(s)	23, 29, 63, 114, 159
AcyI	GRCGYC	2 cut(s)	66, 248
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	142
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	3 cut(s)	53, 85, 265
ApeKI	GCWGC	3 cut(s)	73, 130, 311
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	103
AsuNHI	GCTAGC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	85, 117, 298
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	2 cut(s)	101, 203
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	53, 85, 265
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	6 cut(s)	30, 64, 74, 131, 160, 312
BlsI	GCNGC	6 cut(s)	31, 65, 75, 132, 161, 313
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	67, 237
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	2 cut(s)	66, 248
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	145, 350
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	145, 350
BseXI	GCAGC	3 cut(s)	85, 117, 298
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	4 cut(s)	6, 69, 127, 239
BsmAI	GTCTC	3 cut(s)	53, 85, 265
Bso31I	GGTCTC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	5 cut(s)	23, 29, 63, 114, 159
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	67, 237
BspMI	ACCTGC	1 cut(s)	67
BspOI	GCTAGC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	145, 350
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	168
BssNI	GRCGYC	2 cut(s)	66, 248
BssT1I	CCWWGG	1 cut(s)	168
BstACI	GRCGYC	2 cut(s)	66, 248
BstC8I	GCNNGC	3 cut(s)	27, 135, 309
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	53, 85, 265
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	68
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	85, 117, 298
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	27, 135, 309
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	126
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	169, 319
CviJI	RGCY	3 cut(s)	86, 130, 311
CviKI_1	RGCY	3 cut(s)	86, 130, 311
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	40
DinI	GGCGCC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	172, 322
FaiI	YATR	4 cut(s)	170, 216, 280, 320
FatI	CATG	2 cut(s)	168, 318
Fnu4HI	GCNGC	6 cut(s)	30, 64, 74, 131, 160, 312
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	6 cut(s)	30, 64, 74, 131, 160, 312
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	30, 64, 74, 131, 160, 312
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	4 cut(s)	6, 69, 127, 239
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	2 cut(s)	66, 248
Hin1II	CATG	2 cut(s)	172, 322
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	4 cut(s)	6, 69, 127, 239
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	107, 253, 359
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	112, 238, 356
HpyCH4IV	ACGT	2 cut(s)	141, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	2 cut(s)	141, 300
Hsp92I	GRCGYC	2 cut(s)	66, 248
Hsp92II	CATG	2 cut(s)	172, 322
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Lsp1109I	GCAGC	3 cut(s)	85, 117, 298
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	141, 300
MaeIII	GTNAC	2 cut(s)	35, 109
MboII	GAAGA	1 cut(s)	169
MluCI	AATT	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	194, 197, 200, 226
MspI	CCGG	4 cut(s)	6, 69, 127, 239
MspR9I	CCNGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	22
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	168
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	172, 322
NlaIV	GGNNCC	2 cut(s)	67, 237
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	109
PkrI	GCNGC	6 cut(s)	31, 65, 75, 132, 161, 313
PleI	GAGTC	1 cut(s)	116
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	67, 237
PsrI	GAACNNNNNNTAC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	6 cut(s)	30, 64, 74, 131, 160, 312
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	6 cut(s)	81, 144, 186, 237, 303, 313
SfaNI	GCATC	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	5 cut(s)	23, 29, 63, 114, 159
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	144, 303
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	3 cut(s)	32, 66, 162
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	73, 130, 311
Tsp45I	GTSAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.