Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007854

Physical Location & Seq

Genomic Coordinates Reverse (-)

53625546 .. 53632311

Gene Structure 6766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGACCGGAACAACGCTTACACCGCAGGCGGCGAGTAACTTAGTCAGTCTCAATATTGGTGGCGGCGCCGGGCAGCAGGTCTCGGCTTCGTTCGTCAACTCCTTCCGAGTCACCGCTGTCGCCGACCGGCTGCTCGCTCACGTCCAGTCTGGTTATCGCGGCGATGCCATGGAGTTCTTCAACCTCTGCCTCTCTCTTTCCAGAGGAATTGACTATGCCGTTGCGAACAATGAGGTTCCGGCGAAGGCGGCCGATTTGCCTGTTCTGCTGAGACACATATGCCAAAGGAAAAACAATGACGTTTTGCTAGCTGCTATCATGGTGCTGATGATATCGGTGAAGAATGCTTGTAGTACTGGATGGTTTTCGGACAAGGAGAGTGAAGAGCTATTTACTTTGGCTAATGAGATTGCCAGTAGGTTCTGTGGCTCGGGGGATATTACAACCGGACCTAGCTGTTCTCTTTCTAATGTTGAAAAAGTTATGGAGAGATATTATCCAACGATTAAGATGGGCCATATTCTTGCCTCTCTCGAAGTTAAGCCAGGATATGGAACGTACGTGCTTGATTTCCATATTTCAAAGGGTACCGCTTATTCTCCTCAAGAAAAAATTCGGTTATTTGTTGCACAAACAGATAATATGGAGACATCTTCTTGTATTATAAATCCCCAGCAAGTGAACTTTCTTCTCAATGGAAAGGGAGTAGATAAAAGGATCACTTGTTCAATGGATACTGGATCACAGTTGCCTTCAAATGTGACTGGAATGCTTAAATATGGAACAAATCTTCTTCAAGCTGTGGGCCAGTTCAATGGTCACTATATCATAGTGGTTGCCTTTATGAGCATCGCATCATCACTTGACAACCCAGTACTGAAAGATTATGTTCAGCCCATCATACCTTCCTCATCAGATACTGATATAGTTGAGGGGCGATCAAAAATATCACTTAATTGTCCCATAAGCTCTAGGCGTATCAAAACTCCTGTTAAAGGATATTTGTGCAAACATCTTCAGTGCTTCGACTTCGATAACTTTGTGGTTATGAATATAAGACGACCAAGGTGGCGCTGTCCCCATTGTAATCAGTATGTCTGCTATTTAGACATTCGGGTCGATCAAAATATGGTTAAGGTCCTGAGAGAGGTAGGAGAGAAATTTTCTCAAGTAATTATCTCTGAAGATGGATCATGGAAGGTTGAATTGGAAAAAAATGATGATCTAGATGTGGCAGACAGACTGAAAGAAACATCTGAGAAGGATGAAAGTACTTCAGGTCTTAGTGTTATGGATCTTACCAATGATGATGATATTGAGATGGAAACGGCTAGTGCTTGTGGACCTGAAGATGTGAAACCTTTGAGCAATACAAACACTGCTCAACTAGAGGATGACTTTTGGTCTGGAGTTTACTTGGCTAATAGCGGGCTCACCCCTGGCACACAGTTGGCTAATTGTATCTCTCACTCTGGTCCCAGTTCTTTACAACCTTCCTTGTTGTCTGATGTTGTTTCTCTTGCACTTAATCGAGAAGCTGGGAGTCATAGGAACACAGATTTTTTGGTGTCTGCAATGCATAATCAATTTTCTACTCCCAATAATGTGAACTCACAACAGTTGCAATCTGCAAATCCAATTGCTAGCAATGAGTATGGGATATCACAAATATTACCCAGAGAACTGGGCTCCGGGCTGCCAATAGTCAGGAATCCAATAGCAGTTCAGGCCCTTCCAGCATCGTCCCCGACACTGGGCGTGCAACAAAGACCCAGAACTAGTTTCAATAACTCAGCTCCGAATATTGCCTCCCTCACTTCTCAGGTCGGCCAGTCTATCACTTCCCCAGCAAATGTTCTCAATGCAGTATGTAGCGACTTGGAAAGGCAACAGCACTTCTCTAGGCCCCGAATGAATCCAGTTCAAGTGTCAGACATTGCTTCATCTTCATTGCATCATGGCTCAAGAACAACACAGAATCGGGTTCCCCTAGATCGGTCCTTTACTCATGGTCAATCTGCTGTTGGCATTCCGGTTCCAAGCCAATTGCAAAGTGCTAGCAGAGTATCTTCTGGGCTCCAGGGGTTCACAAATGCACACCTACAGCAAGCTTTTAATCCGAGGACTCACCCAACTGTGGGCCAGTCTTCAAGTGCACATTCCTCGCGGTCCCATGTGATGCAGGGGAGTGCACAAGTTGGAATTGGTCAAACACCAAGTTCTTTAAACAACCAACAGAGTTTCATGATGGCTGCTCAGCGAGCTGCTCAGGCCAGGCAGTCTTCACCAATGACAGCACAAAATCAAACTCCGAGAACCAGGCCATCTTTGTCTGTAAATGCTGCAGGGTTTAGAGGATCGGCAGGGGATCAGCGTGGAAACATTGGAGGAACTGTCCAAGCAGTTTCTGGGGCTGATGGGTTGGGGAATTCACCATCTGAACAGAATTGGCGACCAACAGGTCGAATGCGTGGAAGTCTCTCAGGTCAGGCTTATAGTGCTGCTTTGAACCAGTTCATAATTCGGCCAACCCAACCAACTGAAACTGCAAGACCTGCGCCACACCTGACTCCTCCCTCACACCTGACCGCTCCATTACACCTGACCCCTCCGCCACACCTGACCCCTCCCCCACACCTGACCCGTCCTCCACACCTGACCCGTTCCTCACACCTGACCTCTCCACCATCTGTTGTTCCATCCCAGCTGCCTACTAATATGAGCGCTCAGGTTCCTCAACCACCTAATAGTCATCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009893 GO:0009987 GO:0010033 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0031323 GO:0031325 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051176 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

zf-MIZ

Protein Analysis

920

Amino Acids

99.23

Weight (kDa)

8.1

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Nse	PF11789	312 - 362	7.1e-06	Zinc-finger of the MIZ type in Nse subunit
zf-MIZ	PF02891	316 - 364	7.2e-19	MIZ/SP-RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41580
fragaria_vesca	FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250
malus_domestica	MD06G1091800.v1.1 MD14G1112600.v1.1
prunus_persica	Prupe.5G107000_v2.0.a1 Prupe.5G107000_v2.0.a1
pyrus_communis	pycom06g08790 pycom14g10780
rosa_chinensis	RchiOBHm_Chr7g0196521
rosa_multiflora	Rmu_co8354373.1_g000001 Rmu_co8377057.1_g000001 Rmu_sc0013350.1_g000009 Rmu_sc0019310.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259230
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158500 Rh7BG160500 Rh7CG166900 Rh7DG159700
rosa_wichuraiana	Rw7G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AasI	GACNNNNNNGTC	2 cut(s)	1115, 2460
Acc36I	ACCTGC	2 cut(s)	67, 2563
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	65, 587
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	2591
AccII	CGCG	2 cut(s)	159, 2167
AclWI	GGATC	6 cut(s)	725, 748, 1198, 1302, 2365, 2376
AcoI	YGGCCR	3 cut(s)	249, 1828, 2525
AcsI	RAATTY	3 cut(s)	612, 1160, 2428
AcuI	CTGAAG	4 cut(s)	1001, 1203, 1260, 1368
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	5 cut(s)	355, 560, 589, 876, 1273
AfeI	AGCGCT	1 cut(s)	2725
AfiI	CCNNNNNNNGG	8 cut(s)	551, 995, 1147, 1753, 1754, 1995, 2137, 2138
AhdI	GACNNNNNGTC	1 cut(s)	1402
AhlI	ACTAGT	1 cut(s)	1778
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	5 cut(s)	544, 1438, 2079, 2273, 2318
AjuI	GAANNNNNNNTTGG	2 cut(s)	1190, 1222
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw21I	GWGCWC	2 cut(s)	2158, 2194
Alw26I	GTCTC	5 cut(s)	53, 85, 265, 641, 2483
Alw44I	GTGCAC	2 cut(s)	2154, 2190
AlwI	GGATC	6 cut(s)	725, 748, 1198, 1302, 2365, 2376
AlwNI	CAGNNNCTG	2 cut(s)	920, 2408
Ama87I	CYCGRG	1 cut(s)	430
Aor51HI	AGCGCT	1 cut(s)	2725
ApaLI	GTGCAC	2 cut(s)	2154, 2190
ApeKI	GCWGC	9 cut(s)	73, 130, 311, 1696, 2252, 2264, 2342, 2501, 2707
ApoI	RAATTY	3 cut(s)	612, 1160, 2428
Asp700I	GAANNNNTTC	2 cut(s)	612, 2513
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	4 cut(s)	68, 1074, 2560, 2726
AsuC2I	CCSGG	2 cut(s)	70, 1693
AsuHPI	GGTGA	6 cut(s)	103, 349, 1426, 2120, 2277, 2424
AsuNHI	GCTAGC	3 cut(s)	307, 1643, 2057
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	6 cut(s)	449, 1138, 1343, 1475, 1998, 2169
BaeGI	GKGCMC	2 cut(s)	2158, 2194
BanI	GGYRCC	2 cut(s)	65, 587
BanII	GRGCYC	3 cut(s)	1434, 1691, 2079
BbsI	GAAGAC	2 cut(s)	2139, 2274
Bbv12I	GWGCWC	2 cut(s)	2158, 2194
BbvI	GCAGC	9 cut(s)	85, 117, 298, 1683, 2239, 2251, 2329, 2488, 2694
BceAI	ACGGC	2 cut(s)	203, 1344
BcgI	CGANNNNNNTGC	2 cut(s)	2145, 2179
BciT130I	CCWGG	5 cut(s)	546, 1440, 2081, 2275, 2320
BciVI	GTATCC	1 cut(s)	727
BcnI	CCSGG	2 cut(s)	70, 1693
BcoDI	GTCTC	5 cut(s)	53, 85, 265, 641, 2483
BcuI	ACTAGT	1 cut(s)	1778
BfmI	CTRYAG	2 cut(s)	2102, 2343
BfoI	RGCGCY	3 cut(s)	69, 1075, 2727
BfuAI	ACCTGC	2 cut(s)	67, 2563
BfuI	GTATCC	1 cut(s)	727
BlpI	GCTNAGC	1 cut(s)	2256
BmcAI	AGTACT	3 cut(s)	355, 876, 1273
Bme1390I	CCNGG	7 cut(s)	70, 546, 1440, 1693, 2081, 2275, 2320
Bme18I	GGWCC	6 cut(s)	449, 1138, 1343, 1475, 1998, 2169
BmeRI	GACNNNNNGTC	1 cut(s)	1402
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	142
BmrFI	CCNGG	7 cut(s)	70, 546, 1440, 1693, 2081, 2275, 2320
BmrI	ACTGGG	4 cut(s)	866, 1473, 1694, 1763
BmsI	GCATC	6 cut(s)	154, 858, 863, 1748, 1963, 2169
BmtI	GCTAGC	3 cut(s)	311, 1647, 2061
BmuI	ACTGGG	4 cut(s)	866, 1473, 1694, 1763
BpiI	GAAGAC	2 cut(s)	2139, 2274
BpmI	CTGGAG	2 cut(s)	1428, 2063
Bpu10I	CCTNAGC	2 cut(s)	2268, 2727
Bpu1102I	GCTNAGC	1 cut(s)	2256
BpuEI	CTTGAG	3 cut(s)	588, 1152, 1948
BpuMI	CCSGG	2 cut(s)	70, 1693
BsaAI	YACGTR	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	5 cut(s)	168, 1064, 1438, 2080, 2120
BsaWI	WCCGGW	3 cut(s)	5, 446, 2032
BsaXI	ACNNNNNCTCC	4 cut(s)	2379, 2409, 2632, 2662
Bsc4I	CCNNNNNNNGG	8 cut(s)	551, 995, 1147, 1753, 1754, 1995, 2137, 2138
Bse118I	RCCGGY	1 cut(s)	126
Bse3DI	GCAATG	4 cut(s)	1581, 1654, 1935, 1949
BseBI	CCWGG	5 cut(s)	546, 1440, 2081, 2275, 2320
BseDI	CCNNGG	5 cut(s)	168, 1064, 1438, 2080, 2120
BseGI	GGATG	5 cut(s)	365, 1270, 1399, 2699, 2752
BseLI	CCNNNNNNNGG	8 cut(s)	551, 995, 1147, 1753, 1754, 1995, 2137, 2138
BseMI	GCAATG	4 cut(s)	1581, 1654, 1935, 1949
BseMII	CTCAG	9 cut(s)	260, 1133, 1248, 1806, 1835, 2270, 2282, 2496, 2741
BseRI	GAGGAG	2 cut(s)	591, 2562
BseSI	GKGCMC	2 cut(s)	2158, 2194
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	9 cut(s)	85, 117, 298, 1683, 2239, 2251, 2329, 2488, 2694
BseYI	CCCAGC	4 cut(s)	672, 1538, 1846, 2703
Bsh1236I	CGCG	2 cut(s)	159, 2167
Bsh1285I	CGRYCG	2 cut(s)	127, 252
BshNI	GGYRCC	2 cut(s)	65, 587
BsiEI	CGRYCG	2 cut(s)	127, 252
BsiHKAI	GWGCWC	2 cut(s)	2158, 2194
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	7 cut(s)	6, 69, 127, 239, 447, 1692, 2033
BsiWI	CGTACG	1 cut(s)	558
BslFI	GGGAC	5 cut(s)	945, 1062, 1461, 1729, 2155
BslI	CCNNNNNNNGG	8 cut(s)	551, 995, 1147, 1753, 1754, 1995, 2137, 2138
BsmAI	GTCTC	5 cut(s)	53, 85, 265, 641, 2483
BsmFI	GGGAC	5 cut(s)	945, 1062, 1461, 1729, 2155
BsmI	GAATGC	4 cut(s)	349, 774, 2028, 2472
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	5 cut(s)	1434, 1691, 2079, 2158, 2194
Bsp1720I	GCTNAGC	1 cut(s)	2256
Bsp19I	CCATGG	1 cut(s)	168
BspCNI	CTCAG	9 cut(s)	261, 1134, 1249, 1805, 1834, 2269, 2281, 2495, 2740
BspFNI	CGCG	2 cut(s)	159, 2167
BspHI	TCATGA	1 cut(s)	2244
BspMAI	CTGCAG	1 cut(s)	2347
BspMI	ACCTGC	2 cut(s)	67, 2563
BspOI	GCTAGC	3 cut(s)	311, 1647, 2061
BspPI	GGATC	6 cut(s)	725, 748, 1198, 1302, 2365, 2376
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	2 cut(s)	65, 587
BspTNI	GGTCTC	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	2591
BsrDI	GCAATG	4 cut(s)	1581, 1654, 1935, 1949
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	5 cut(s)	168, 1064, 1438, 2080, 2120
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	168, 1064
Bst2UI	CCWGG	5 cut(s)	546, 1440, 2081, 2275, 2320
Bst4CI	ACNGT	5 cut(s)	747, 1449, 1620, 2137, 2395
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	2555
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	9 cut(s)	27, 135, 309, 1430, 1645, 1760, 2059, 2109, 2262
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	2 cut(s)	993, 1145
BstF5I	GGATG	5 cut(s)	365, 1270, 1399, 2699, 2752
BstFNI	CGCG	2 cut(s)	159, 2167
BstH2I	RGCGCY	3 cut(s)	69, 1075, 2727
BstHHI	GCGC	4 cut(s)	68, 1074, 2560, 2726
BstMAI	GTCTC	5 cut(s)	53, 85, 265, 641, 2483
BstMCI	CGRYCG	2 cut(s)	127, 252
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 248, 265, 1727, 1736, 2261, 2270, 2498, 2555
BstNI	CCWGG	5 cut(s)	546, 1440, 2081, 2275, 2320
BstSCI	CCNGG	7 cut(s)	68, 544, 1438, 1691, 2079, 2273, 2318
BstSFI	CTRYAG	2 cut(s)	2102, 2343
BstSLI	GKGCMC	2 cut(s)	2158, 2194
BstUI	CGCG	2 cut(s)	159, 2167
BstV1I	GCAGC	9 cut(s)	85, 117, 298, 1683, 2239, 2251, 2329, 2488, 2694
BstV2I	GAAGAC	2 cut(s)	2139, 2274
BstX2I	RGATCY	1 cut(s)	1294
BstXI	CCANNNNNNTGG	2 cut(s)	815, 1684
BstYI	RGATCY	1 cut(s)	1294
BstZI	CGGCCG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	727
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	2 cut(s)	177, 835
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	365, 1270, 1399, 2699, 2752
BtsI	GCAGTG	1 cut(s)	1377
BtsIMutI	CAGTG	3 cut(s)	1025, 1377, 1751
BveI	ACCTGC	2 cut(s)	67, 2563
Cac8I	GCNNGC	9 cut(s)	27, 135, 309, 1430, 1645, 1760, 2059, 2109, 2262
CaiI	CAGNNNCTG	2 cut(s)	920, 2408
CciI	TCATGA	1 cut(s)	2244
CfoI	GCGC	4 cut(s)	68, 1074, 2560, 2726
Cfr10I	RCCGGY	1 cut(s)	126
Csp6I	GTAC	5 cut(s)	354, 559, 588, 875, 1272
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	7 cut(s)	169, 319, 1194, 1958, 2009, 2174, 2245
CviQI	GTAC	5 cut(s)	354, 559, 588, 875, 1272
DinI	GGCGCC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	2226
DrdI	GACNNNNNNGTC	2 cut(s)	1115, 2460
DriI	GACNNNNNGTC	1 cut(s)	1402
DseDI	GACNNNNNNGTC	2 cut(s)	1115, 2460
EaeI	YGGCCR	3 cut(s)	249, 1828, 2525
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	378
Eam1105I	GACNNNNNGTC	1 cut(s)	1402
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	2601
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	168, 1064
Eco24I	GRGCYC	3 cut(s)	1434, 1691, 2079
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	2 cut(s)	333, 1662
Eco47I	GGWCC	6 cut(s)	449, 1138, 1343, 1475, 1998, 2169
Eco47III	AGCGCT	1 cut(s)	2725
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	4 cut(s)	1001, 1203, 1260, 1368
Eco88I	CYCGRG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	2 cut(s)	993, 1145
EcoO109I	RGGNCCY	3 cut(s)	1138, 1729, 1905
EcoRI	GAATTC	1 cut(s)	2428
EcoRII	CCWGG	5 cut(s)	544, 1438, 2079, 2273, 2318
EcoRV	GATATC	2 cut(s)	333, 1662
EcoT14I	CCWWGG	2 cut(s)	168, 1064
EcoT22I	ATGCAT	1 cut(s)	1581
EcoT38I	GRGCYC	3 cut(s)	1434, 1691, 2079
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	168, 1064
FaeI	CATG	7 cut(s)	172, 322, 1197, 1961, 2012, 2177, 2248
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	5 cut(s)	945, 1062, 1461, 1729, 2155
FatI	CATG	7 cut(s)	168, 318, 1193, 1957, 2008, 2173, 2244
FauI	CCCGC	1 cut(s)	1421
FauNDI	CATATG	1 cut(s)	278
FokI	GGATG	5 cut(s)	372, 1277, 1406, 2686, 2739
FriOI	GRGCYC	3 cut(s)	1434, 1691, 2079
GlaI	GCGC	4 cut(s)	67, 1073, 2559, 2725
GsaI	CCCAGC	4 cut(s)	676, 1542, 1850, 2707
GsuI	CTGGAG	2 cut(s)	1428, 2063
HaeII	RGCGCY	3 cut(s)	69, 1075, 2727
HapII	CCGG	7 cut(s)	6, 69, 127, 239, 447, 1692, 2033
HhaI	GCGC	4 cut(s)	68, 1074, 2560, 2726
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	7 cut(s)	172, 322, 1197, 1961, 2012, 2177, 2248
Hin6I	GCGC	4 cut(s)	66, 1072, 2558, 2724
HinP1I	GCGC	4 cut(s)	66, 1072, 2558, 2724
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	2109
HinfI	GANTC	7 cut(s)	108, 1543, 1711, 1915, 1978, 2125, 2569
HpaII	CCGG	7 cut(s)	6, 69, 127, 239, 447, 1692, 2033
HphI	GGTGA	6 cut(s)	103, 349, 1426, 2120, 2277, 2424
Hpy166II	GTNNAC	8 cut(s)	97, 682, 1343, 1414, 1609, 2088, 2156, 2192
Hpy8I	GTNNAC	8 cut(s)	97, 682, 1343, 1414, 1609, 2088, 2156, 2192
HpyAV	CCTTC	8 cut(s)	112, 238, 762, 915, 1192, 1255, 1503, 1742
HpyCH4III	ACNGT	5 cut(s)	747, 1449, 1620, 2137, 2395
HpyCH4IV	ACGT	4 cut(s)	141, 300, 557, 561
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 248, 265, 1727, 1736, 2261, 2270, 2498, 2555
HpySE526I	ACGT	4 cut(s)	141, 300, 557, 561
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	172, 322, 1197, 1961, 2012, 2177, 2248
HspAI	GCGC	4 cut(s)	66, 1072, 2558, 2724
KasI	GGCGCC	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	591
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	4 cut(s)	1694, 1801, 2082, 2596
Lsp1109I	GCAGC	9 cut(s)	85, 117, 298, 1683, 2239, 2251, 2329, 2488, 2694
LweI	GCATC	6 cut(s)	154, 858, 863, 1748, 1963, 2169
MaeII	ACGT	4 cut(s)	141, 300, 557, 561
MaeIII	GTNAC	4 cut(s)	35, 109, 760, 818
MbiI	CCGCTC	1 cut(s)	2591
MfeI	CAATTG	2 cut(s)	1638, 2045
MflI	RGATCY	1 cut(s)	1294
MhlI	GDGCHC	5 cut(s)	1434, 1691, 2079, 2158, 2194
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	4 cut(s)	117, 1552, 2119, 2563
MmeI	TCCRAC	2 cut(s)	524, 2179
Mph1103I	ATGCAT	1 cut(s)	1581
MroXI	GAANNNNTTC	2 cut(s)	612, 2513
MseI	TTAA	9 cut(s)	507, 540, 774, 954, 993, 1134, 1527, 2115, 2225
MspA1I	CMGCKG	2 cut(s)	116, 2707
MspI	CCGG	7 cut(s)	6, 69, 127, 239, 447, 1692, 2033
MspR9I	CCNGG	7 cut(s)	70, 546, 1440, 1693, 2081, 2275, 2320
MunI	CAATTG	2 cut(s)	1638, 2045
Mva1269I	GAATGC	4 cut(s)	349, 774, 2028, 2472
MvaI	CCWGG	5 cut(s)	546, 1440, 2081, 2275, 2320
MvnI	CGCG	2 cut(s)	159, 2167
MwoI	GCNNNNNNNGC	9 cut(s)	22, 248, 265, 1727, 1736, 2261, 2270, 2498, 2555
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	70, 1693
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	278
NheI	GCTAGC	3 cut(s)	307, 1643, 2057
NlaIII	CATG	7 cut(s)	172, 322, 1197, 1961, 2012, 2177, 2248
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	109, 760, 818
NsiI	ATGCAT	1 cut(s)	1581
PagI	TCATGA	1 cut(s)	2244
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	4 cut(s)	349, 774, 2028, 2472
PdmI	GAANNNNTTC	2 cut(s)	612, 2513
PfeI	GAWTC	3 cut(s)	1711, 1915, 1978
Pfl23II	CGTACG	1 cut(s)	558
PflMI	CCANNNNNTGG	1 cut(s)	551
PleI	GAGTC	4 cut(s)	116, 1551, 2119, 2563
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	4 cut(s)	116, 1551, 2119, 2563
Ppu21I	YACGTR	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	1138
PsiI	TTATAA	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	1138
Psp6I	CCWGG	5 cut(s)	544, 1438, 2079, 2273, 2318
PspFI	CCCAGC	4 cut(s)	672, 1538, 1846, 2703
PspGI	CCWGG	5 cut(s)	544, 1438, 2079, 2273, 2318
PspLI	CGTACG	1 cut(s)	558
PspPPI	RGGWCCY	1 cut(s)	1138
PsrI	GAACNNNNNNTAC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	2347
PstNI	CAGNNNCTG	2 cut(s)	920, 2408
PsuI	RGATCY	1 cut(s)	1294
PvuII	CAGCTG	1 cut(s)	2707
RsaI	GTAC	5 cut(s)	355, 560, 589, 876, 1273
RsaNI	GTAC	5 cut(s)	354, 559, 588, 875, 1272
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	9 cut(s)	507, 540, 774, 954, 993, 1134, 1527, 2115, 2225
ScaI	AGTACT	3 cut(s)	355, 876, 1273
SchI	GAGTC	4 cut(s)	117, 1552, 2119, 2563
ScrFI	CCNGG	7 cut(s)	70, 546, 1440, 1693, 2081, 2275, 2320
SduI	GDGCHC	5 cut(s)	1434, 1691, 2079, 2158, 2194
SfaNI	GCATC	6 cut(s)	154, 858, 863, 1748, 1963, 2169
SfcI	CTRYAG	2 cut(s)	2102, 2343
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	6 cut(s)	449, 1138, 1343, 1475, 1998, 2169
SmlI	CTYRAG	3 cut(s)	603, 1167, 1963
SmoI	CTYRAG	3 cut(s)	603, 1167, 1963
SpeI	ACTAGT	1 cut(s)	1778
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	3 cut(s)	55, 1671, 1804
StyD4I	CCNGG	7 cut(s)	68, 544, 1438, 1691, 2079, 2273, 2318
StyI	CCWWGG	2 cut(s)	168, 1064
TaaI	ACNGT	5 cut(s)	747, 1449, 1620, 2137, 2395
TaiI	ACGT	4 cut(s)	144, 303, 560, 564
TaqI	TCGA	6 cut(s)	534, 1026, 1032, 1119, 1531, 2464
TaqII	GACCGA	1 cut(s)	1986
TatI	WGTACW	3 cut(s)	353, 874, 1271
TauI	GCSGC	4 cut(s)	32, 66, 162, 251
TfiI	GAWTC	3 cut(s)	1711, 1915, 1978
Tru1I	TTAA	9 cut(s)	507, 540, 774, 954, 993, 1134, 1527, 2115, 2225
Tru9I	TTAA	9 cut(s)	507, 540, 774, 954, 993, 1134, 1527, 2115, 2225
TscAI	CASTG	3 cut(s)	1025, 1384, 1758
TseFI	GTSAC	3 cut(s)	109, 760, 818
TseI	GCWGC	9 cut(s)	73, 130, 311, 1696, 2252, 2264, 2342, 2501, 2707
Tsp45I	GTSAC	3 cut(s)	109, 760, 818
TspDTI	ATGAA	7 cut(s)	1064, 1281, 1928, 1932, 1938, 2233, 2506
TspRI	CASTG	3 cut(s)	1025, 1384, 1758
Van91I	CCANNNNNTGG	1 cut(s)	551
VneI	GTGCAC	2 cut(s)	2154, 2190
VpaK11BI	GGWCC	6 cut(s)	449, 1138, 1343, 1475, 1998, 2169
XagI	CCTNNNNNAGG	2 cut(s)	993, 1145
XapI	RAATTY	3 cut(s)	612, 1160, 2428
XbaI	TCTAGA	1 cut(s)	1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2405
XmnI	GAANNNNTTC	2 cut(s)	612, 2513
ZrmI	AGTACT	3 cut(s)	355, 876, 1273
Zsp2I	ATGCAT	1 cut(s)	1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.