Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007854

Physical Location & Seq

Genomic Coordinates Forward (+)

12302575 .. 12310163

Gene Structure 7589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGACCGGAACGACGCTTACACCGCAGGCGGCGAGTAACTTAGTCAGTCTCAATATTGGTGGCGGCGCCGGGCAGCAGGTCTCGGCTTCGTTCGTCAACTCCTTCCGAGTCACCGCCGTCGCCGACCGGCTGCTCGCTCACGTCCAGTCTGGTTATCGCGGCGATGCCATGGAGTTCTTCAACCTCTGCCTCTCTCTTTCCAGAGGAATTGACTATGCCGTTGCGAACAATGAGGTTCCGGCGAAGGCGTCCGATTTGCCTGTTCTGTTGAGACAGATATGCCAAAGGAAAAACAATGACGTTTTGCTAGCTGCTATCATGGTGCTGATGATATCTGTGAAGAATGCTTGTAGTACTGGATGGTTTTCGGAGAAGGAGAATGAAGAGCTATTTTCTTTAGCTAATGAGATCGCCAGTAGGTTCTGTGGCTCGGGGGATATTACAACTGGACCTAGCTGTTCTCTTTCTAATGTTGAAAAAGTTATGGAGAGATATTATCCAACGATGAAGATGGGCCACATTCTTGCCTCTCTCGAAGTTAAGCCTGGATATGGAACGTACGTGCTTGATTTCCATATTTCAAAGAGTACTGCATATTCTCCTCAAGAAAAAATTCGGTTATTTGTTGCACAAACAGATAATATGGAGACATCTTCTTGTATTATAAGTCCCCAACAAGTAAACTTTCTTCTCAATGGAAAGGGAGTAGATAAAAGGATCACTTGTTCAATGGATACTGGATCACAGTTGCCTTCAAATGTGACTGGAATGCTTAAATATGGAACAAATCTTCTTCAAGCTGTGGGCCAGTTCAATGGTCACTATATCATAGTGGTTGCCTTTATGAGCATCGCATCATCACTTGACACCCCAGTACTGAAAGATTATGTTCAGCCCATCGTACCTTCCTCATCAGATACTGATATAGTTGAGGGGCGATCAAAAATATCACTTAATTGTCCCATAAGCTCTAGGCGTATCAAAACTCCTGTTAAAGGATATTTGTGCAAACATCTTCAGTGCTTCGACTTCGATAACTTTGTGGTTATGAATATAAGACGACCAAGGTGGCGCTGCCCCCATTGTAATCAGTATGTCTGCTATTTAGACATTCGGATCGATCAAAATATGGTTAAGGTCCTGAGAGAGGTAGGAGAGAAATTTTCTCAAGTAATTATCTCTGAAGATGGATCATGGAAGGTTGAGTTGGAAAAAAATGATGATCTAGATGTGGCAGACAAACTGAAAGAAACATCTGAGAAGGATGAAAGTACTCCAGGTCTTAGTGTTATGGATCTTACCAATGATGATGATATTGAGATGGAAACGGCTAGTGCTTGTGGACCTGAAGATGTGAAACCTTTGAGCAATACAAACACTGCTCAACTAGAGGATGACTTTTGGTCTGGAGTTTACTTGGCTAATAGCGGGCTCACCCCTGGCACACAATTGGCTAATTGTATCTCTCCCGGTCACAGTTCTTTACAACCTTCCTTCTTGTCTGATGCTGTTTCTCTTGCACTTAATCGAGAAGCTGGGAGTCATAGGAACACAGATTTTTTGGTGTCTGCAATGCATAATCAATTTTCTACTCCCAATAATGTGAACTCACAACAGTTGCAATCTGCAAATCCGATTGCTAGCAATGAGTATGGGATATCACAAATATTACCCAGAGAACTGGGCTCCGGGCTGCCAATAGTCAGGAATCCAATAGCAGTTCAGGCCCTTCCAGCATCGTCCCCAACAATGGGCTCGCAACAAAGACCCAGAACTAGTTTCAATAATTCAGCTCCCAATATTGCCTCCCTCACTTCTCAGGCCGGCCAGTCTATCACTTCCCCAGCAAATGTTCTCAATGCAGTATGTAGCGACTTGGAAAGGCAACAGCACTTCTCTAGGCCCCGAATGAATCCAGTTCAAGTGTCAGACATTGCTTCATCTTCATTGCATCATGGCTCAAGAACAACACAGAATCGGGTTCCCCTAGATCGGTCCTTTACTCATGGTCAATCTGCTGTTGGCATTCCGGTTCCAAGCCAATTGCAAAGTGCTAGCAGAGTATCTTCTGGGCTCCAGGGGTTCACAAATGCACACCTACAGCAAACTTTTAATCCGAGGGCTCACCCAACTGTGGGCCAGTCTTCAAGTGCACATTCCTCGCGGTCCCATGTGATGCAGGGGAGTGCACAAGTTGGAATTGGTCAAACACCAAGTTCTTTAAACAACCAACAGAGTTTCATAATGGCTGCTCAGCGAGCTGCTCAGGCCAGGCAGTCTTCACCAATGACAGCACAAAATCAAACTCCCAGAACCAGGCCATCTTTGTCTGTAAATGCTGCAGGGTTTAGAGGATCGACAGGGGATCAGCGTGGAAACATTGGAGGAACTGTCCAAGCAGTTTCAGGGGCTGATGGGTTGGGGAATTCACCATCTGAACAGAATTGGCGACCAACAGGTCGAATGCGTGGAAGTCTCTCAGGTCAGGCTTATAGTGCTGCTTTGAACCAGTTCATAATTCGGCCAACCCAACCAACTGAAACTGCGAGACCTGTGCCACACCTGACTCCTCCCTCACACCTGACCCCTCCCCCACACCTGACCCCTCCGCCACACCTGACCCGTCCTCCACACCTGACCCGTTCCTCACACCTGACCTCTCCACCATCTGTTGTTCCATCCCAGCTGCCTACTAATATAAGCGCTCAGGTTCCTCAACTACCTAATAGTCATCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009893 GO:0009987 GO:0010033 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0031323 GO:0031325 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051176 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

zf-MIZ

Protein Analysis

913

Amino Acids

98.56

Weight (kDa)

8.09

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Nse	PF11789	312 - 362	7.1e-06	Zinc-finger of the MIZ type in Nse subunit
zf-MIZ	PF02891	316 - 364	7.1e-19	MIZ/SP-RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41580
fragaria_vesca	FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250
malus_domestica	MD06G1091800.v1.1 MD14G1112600.v1.1
prunus_persica	Prupe.5G107000_v2.0.a1 Prupe.5G107000_v2.0.a1
pyrus_communis	pycom06g08790 pycom14g10780
rosa_chinensis	RchiOBHm_Chr7g0196521
rosa_multiflora	Rmu_co8354373.1_g000001 Rmu_co8377057.1_g000001 Rmu_sc0013350.1_g000009 Rmu_sc0019310.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259230
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158500 Rh7BG160500 Rh7CG166900 Rh7DG159700
rosa_wichuraiana	Rw7G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AasI	GACNNNNNNGTC	1 cut(s)	2457
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	2 cut(s)	159, 2164
AciI	CCGC	8 cut(s)	23, 29, 63, 114, 159, 1428, 2164, 2609
AclWI	GGATC	7 cut(s)	725, 748, 1124, 1198, 1302, 2362, 2373
AcoI	YGGCCR	2 cut(s)	1825, 2522
AcsI	RAATTY	3 cut(s)	612, 1160, 2425
AcuI	CTGAAG	3 cut(s)	1001, 1203, 1368
AcyI	GRCGYC	2 cut(s)	66, 248
AfaI	GTAC	6 cut(s)	355, 560, 589, 876, 903, 1273
AfeI	AGCGCT	1 cut(s)	2704
AfiI	CCNNNNNNNGG	9 cut(s)	551, 995, 1147, 1750, 1751, 1992, 2134, 2135, 2316
AhdI	GACNNNNNGTC	1 cut(s)	1402
AhlI	ACTAGT	1 cut(s)	1775
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	6 cut(s)	544, 1276, 1438, 2076, 2270, 2315
AjuI	GAANNNNNNNTTGG	2 cut(s)	1190, 1222
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw21I	GWGCWC	2 cut(s)	2155, 2191
Alw26I	GTCTC	6 cut(s)	53, 85, 265, 641, 2480, 2542
Alw44I	GTGCAC	2 cut(s)	2151, 2187
AlwI	GGATC	7 cut(s)	725, 748, 1124, 1198, 1302, 2362, 2373
AlwNI	CAGNNNCTG	2 cut(s)	920, 2411
Ama87I	CYCGRG	1 cut(s)	430
Aor51HI	AGCGCT	1 cut(s)	2704
ApaLI	GTGCAC	2 cut(s)	2151, 2187
ApoI	RAATTY	3 cut(s)	612, 1160, 2425
Asp700I	GAANNNNTTC	2 cut(s)	612, 2510
AspLEI	GCGC	3 cut(s)	68, 1074, 2705
AsuC2I	CCSGG	3 cut(s)	70, 1470, 1690
AsuHPI	GGTGA	5 cut(s)	103, 1426, 2117, 2274, 2421
AsuNHI	GCTAGC	3 cut(s)	307, 1640, 2054
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	5 cut(s)	449, 1138, 1343, 1995, 2166
BaeGI	GKGCMC	2 cut(s)	2155, 2191
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	5 cut(s)	1434, 1688, 1757, 2076, 2125
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
BbsI	GAAGAC	2 cut(s)	2136, 2271
Bbv12I	GWGCWC	2 cut(s)	2155, 2191
BceAI	ACGGC	3 cut(s)	101, 203, 1344
BcgI	CGANNNNNNTGC	4 cut(s)	2142, 2176, 2536, 2570
BciT130I	CCWGG	6 cut(s)	546, 1278, 1440, 2078, 2272, 2317
BciVI	GTATCC	1 cut(s)	727
BcnI	CCSGG	3 cut(s)	70, 1470, 1690
BcoDI	GTCTC	6 cut(s)	53, 85, 265, 641, 2480, 2542
BcuI	ACTAGT	1 cut(s)	1775
BfmI	CTRYAG	2 cut(s)	2099, 2340
BfoI	RGCGCY	3 cut(s)	69, 1075, 2706
BfuAI	ACCTGC	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	727
BlpI	GCTNAGC	1 cut(s)	2253
BmcAI	AGTACT	4 cut(s)	355, 589, 876, 1273
Bme1390I	CCNGG	9 cut(s)	70, 546, 1278, 1440, 1470, 1690, 2078, 2272, 2317
Bme18I	GGWCC	5 cut(s)	449, 1138, 1343, 1995, 2166
BmeRI	GACNNNNNGTC	1 cut(s)	1402
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	9 cut(s)	67, 237, 1687, 1904, 1983, 2034, 2075, 2168, 2712
BmrFI	CCNGG	9 cut(s)	70, 546, 1278, 1440, 1470, 1690, 2078, 2272, 2317
BmrI	ACTGGG	2 cut(s)	866, 1691
BmsI	GCATC	7 cut(s)	154, 858, 863, 1495, 1745, 1960, 2166
BmtI	GCTAGC	3 cut(s)	311, 1644, 2058
BmuI	ACTGGG	2 cut(s)	866, 1691
BpiI	GAAGAC	2 cut(s)	2136, 2271
BpmI	CTGGAG	3 cut(s)	1260, 1428, 2060
Bpu10I	CCTNAGC	2 cut(s)	2265, 2706
Bpu1102I	GCTNAGC	1 cut(s)	2253
BpuEI	CTTGAG	3 cut(s)	588, 1152, 1945
BpuMI	CCSGG	3 cut(s)	70, 1470, 1690
Bsa29I	ATCGAT	1 cut(s)	1119
BsaAI	YACGTR	1 cut(s)	562
BsaHI	GRCGYC	2 cut(s)	66, 248
BsaI	GGTCTC	2 cut(s)	85, 2542
BsaJI	CCNNGG	5 cut(s)	168, 1064, 1438, 2077, 2117
BsaWI	WCCGGW	2 cut(s)	5, 2029
BsaXI	ACNNNNNCTCC	4 cut(s)	2376, 2406, 2611, 2641
Bsc4I	CCNNNNNNNGG	9 cut(s)	551, 995, 1147, 1750, 1751, 1992, 2134, 2135, 2316
Bse118I	RCCGGY	2 cut(s)	126, 1823
Bse3DI	GCAATG	4 cut(s)	1578, 1651, 1932, 1946
BseBI	CCWGG	6 cut(s)	546, 1278, 1440, 2078, 2272, 2317
BseCI	ATCGAT	1 cut(s)	1119
BseDI	CCNNGG	5 cut(s)	168, 1064, 1438, 2077, 2117
BseGI	GGATG	5 cut(s)	365, 1270, 1399, 2678, 2731
BseLI	CCNNNNNNNGG	9 cut(s)	551, 995, 1147, 1750, 1751, 1992, 2134, 2135, 2316
BseMI	GCAATG	4 cut(s)	1578, 1651, 1932, 1946
BseMII	CTCAG	7 cut(s)	1133, 1248, 1832, 2267, 2279, 2493, 2720
BseRI	GAGGAG	2 cut(s)	591, 2559
BseSI	GKGCMC	2 cut(s)	2155, 2191
BseYI	CCCAGC	3 cut(s)	1535, 1843, 2682
Bsh1236I	CGCG	2 cut(s)	159, 2164
Bsh1285I	CGRYCG	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	1119
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	2155, 2191
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	8 cut(s)	6, 69, 127, 239, 1470, 1689, 1824, 2030
BsiWI	CGTACG	1 cut(s)	558
BslFI	GGGAC	4 cut(s)	654, 945, 1726, 2152
BslI	CCNNNNNNNGG	9 cut(s)	551, 995, 1147, 1750, 1751, 1992, 2134, 2135, 2316
BsmAI	GTCTC	6 cut(s)	53, 85, 265, 641, 2480, 2542
BsmFI	GGGAC	4 cut(s)	654, 945, 1726, 2152
BsmI	GAATGC	4 cut(s)	349, 774, 2025, 2469
Bso31I	GGTCTC	2 cut(s)	85, 2542
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	7 cut(s)	1434, 1688, 1757, 2076, 2125, 2155, 2191
Bsp1720I	GCTNAGC	1 cut(s)	2253
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	8 cut(s)	23, 29, 63, 114, 159, 1428, 2164, 2609
BspCNI	CTCAG	7 cut(s)	1134, 1249, 1831, 2266, 2278, 2492, 2719
BspDI	ATCGAT	1 cut(s)	1119
BspFNI	CGCG	2 cut(s)	159, 2164
BspLI	GGNNCC	9 cut(s)	67, 237, 1687, 1904, 1983, 2034, 2075, 2168, 2712
BspMAI	CTGCAG	1 cut(s)	2344
BspMI	ACCTGC	1 cut(s)	67
BspOI	GCTAGC	3 cut(s)	311, 1644, 2058
BspPI	GGATC	7 cut(s)	725, 748, 1124, 1198, 1302, 2362, 2373
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	85, 2542
BsrDI	GCAATG	4 cut(s)	1578, 1651, 1932, 1946
BsrFI	RCCGGY	2 cut(s)	126, 1823
BssAI	RCCGGY	2 cut(s)	126, 1823
BssECI	CCNNGG	5 cut(s)	168, 1064, 1438, 2077, 2117
BssNI	GRCGYC	2 cut(s)	66, 248
BssT1I	CCWWGG	2 cut(s)	168, 1064
Bst2UI	CCWGG	6 cut(s)	546, 1278, 1440, 2078, 2272, 2317
Bst4CI	ACNGT	5 cut(s)	747, 1478, 1617, 2134, 2392
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	2 cut(s)	66, 248
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	9 cut(s)	27, 135, 309, 1430, 1642, 1757, 1825, 2056, 2259
BstDEI	CTNAG	9 cut(s)	40, 1142, 1257, 1283, 1818, 2253, 2265, 2479, 2706
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	2 cut(s)	993, 1145
BstF5I	GGATG	5 cut(s)	365, 1270, 1399, 2678, 2731
BstFNI	CGCG	2 cut(s)	159, 2164
BstH2I	RGCGCY	3 cut(s)	69, 1075, 2706
BstHHI	GCGC	3 cut(s)	68, 1074, 2705
BstMAI	GTCTC	6 cut(s)	53, 85, 265, 641, 2480, 2542
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 1724, 1733, 2258, 2267, 2495
BstNI	CCWGG	6 cut(s)	546, 1278, 1440, 2078, 2272, 2317
BstSCI	CCNGG	9 cut(s)	68, 544, 1276, 1438, 1468, 1688, 2076, 2270, 2315
BstSFI	CTRYAG	2 cut(s)	2099, 2340
BstSLI	GKGCMC	2 cut(s)	2155, 2191
BstUI	CGCG	2 cut(s)	159, 2164
BstV2I	GAAGAC	2 cut(s)	2136, 2271
BstX2I	RGATCY	1 cut(s)	1294
BstXI	CCANNNNNNTGG	2 cut(s)	815, 1681
BstYI	RGATCY	1 cut(s)	1294
Bsu15I	ATCGAT	1 cut(s)	1119
BsuI	GTATCC	1 cut(s)	727
BsuTUI	ATCGAT	1 cut(s)	1119
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	2 cut(s)	177, 835
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	365, 1270, 1399, 2678, 2731
BtsI	GCAGTG	1 cut(s)	1377
BtsIMutI	CAGTG	2 cut(s)	1025, 1377
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	9 cut(s)	27, 135, 309, 1430, 1642, 1757, 1825, 2056, 2259
CaiI	CAGNNNCTG	2 cut(s)	920, 2411
CfoI	GCGC	3 cut(s)	68, 1074, 2705
Cfr10I	RCCGGY	2 cut(s)	126, 1823
ClaI	ATCGAT	1 cut(s)	1119
CseI	GACGC	2 cut(s)	22, 237
Csp6I	GTAC	6 cut(s)	354, 559, 588, 875, 902, 1272
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	6 cut(s)	169, 319, 1194, 1955, 2006, 2171
CviQI	GTAC	6 cut(s)	354, 559, 588, 875, 902, 1272
DdeI	CTNAG	9 cut(s)	40, 1142, 1257, 1283, 1818, 2253, 2265, 2479, 2706
DinI	GGCGCC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	2223
DrdI	GACNNNNNNGTC	1 cut(s)	2457
DriI	GACNNNNNGTC	1 cut(s)	1402
DseDI	GACNNNNNNGTC	1 cut(s)	2457
EaeI	YGGCCR	2 cut(s)	1825, 2522
Eam1104I	CTCTTC	1 cut(s)	378
Eam1105I	GACNNNNNGTC	1 cut(s)	1402
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	2598
Eco130I	CCWWGG	2 cut(s)	168, 1064
Eco24I	GRGCYC	5 cut(s)	1434, 1688, 1757, 2076, 2125
Eco31I	GGTCTC	2 cut(s)	85, 2542
Eco32I	GATATC	2 cut(s)	333, 1659
Eco47I	GGWCC	5 cut(s)	449, 1138, 1343, 1995, 2166
Eco47III	AGCGCT	1 cut(s)	2704
Eco57I	CTGAAG	3 cut(s)	1001, 1203, 1368
Eco88I	CYCGRG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	2 cut(s)	993, 1145
EcoO109I	RGGNCCY	3 cut(s)	1138, 1726, 1902
EcoRI	GAATTC	1 cut(s)	2425
EcoRII	CCWGG	6 cut(s)	544, 1276, 1438, 2076, 2270, 2315
EcoRV	GATATC	2 cut(s)	333, 1659
EcoT14I	CCWWGG	2 cut(s)	168, 1064
EcoT22I	ATGCAT	1 cut(s)	1578
EcoT38I	GRGCYC	5 cut(s)	1434, 1688, 1757, 2076, 2125
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	168, 1064
FaeI	CATG	6 cut(s)	172, 322, 1197, 1958, 2009, 2174
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	4 cut(s)	654, 945, 1726, 2152
FatI	CATG	6 cut(s)	168, 318, 1193, 1954, 2005, 2170
FauI	CCCGC	1 cut(s)	1421
FokI	GGATG	5 cut(s)	372, 1277, 1406, 2665, 2718
FriOI	GRGCYC	5 cut(s)	1434, 1688, 1757, 2076, 2125
FseI	GGCCGGCC	1 cut(s)	1827
GlaI	GCGC	3 cut(s)	67, 1073, 2704
GsaI	CCCAGC	3 cut(s)	1539, 1847, 2686
GsuI	CTGGAG	3 cut(s)	1260, 1428, 2060
HaeII	RGCGCY	3 cut(s)	69, 1075, 2706
HapII	CCGG	8 cut(s)	6, 69, 127, 239, 1470, 1689, 1824, 2030
HgaI	GACGC	2 cut(s)	22, 237
HhaI	GCGC	3 cut(s)	68, 1074, 2705
Hin1I	GRCGYC	2 cut(s)	66, 248
Hin1II	CATG	6 cut(s)	172, 322, 1197, 1958, 2009, 2174
Hin6I	GCGC	3 cut(s)	66, 1072, 2703
HinP1I	GCGC	3 cut(s)	66, 1072, 2703
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	6 cut(s)	108, 1540, 1708, 1912, 1975, 2566
HpaII	CCGG	8 cut(s)	6, 69, 127, 239, 1470, 1689, 1824, 2030
HphI	GGTGA	5 cut(s)	103, 1426, 2117, 2274, 2421
Hpy166II	GTNNAC	8 cut(s)	97, 682, 1343, 1414, 1606, 2085, 2153, 2189
Hpy188III	TCNNGA	9 cut(s)	201, 533, 605, 1141, 1226, 1407, 1529, 1705, 1962
Hpy8I	GTNNAC	8 cut(s)	97, 682, 1343, 1414, 1606, 2085, 2153, 2189
Hpy99I	CGWCG	2 cut(s)	16, 122
HpyCH4III	ACNGT	5 cut(s)	747, 1478, 1617, 2134, 2392
HpyCH4IV	ACGT	4 cut(s)	141, 300, 557, 561
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 1724, 1733, 2258, 2267, 2495
HpyF3I	CTNAG	9 cut(s)	40, 1142, 1257, 1283, 1818, 2253, 2265, 2479, 2706
HpySE526I	ACGT	4 cut(s)	141, 300, 557, 561
Hsp92I	GRCGYC	2 cut(s)	66, 248
Hsp92II	CATG	6 cut(s)	172, 322, 1197, 1958, 2009, 2174
HspAI	GCGC	3 cut(s)	66, 1072, 2703
KasI	GGCGCC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	1823
KroNI	GCCGGC	1 cut(s)	1825
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	1691, 1798, 2079
LweI	GCATC	7 cut(s)	154, 858, 863, 1495, 1745, 1960, 2166
MaeII	ACGT	4 cut(s)	141, 300, 557, 561
MaeIII	GTNAC	5 cut(s)	35, 109, 760, 818, 1472
MfeI	CAATTG	2 cut(s)	1448, 2042
MflI	RGATCY	1 cut(s)	1294
MhlI	GDGCHC	7 cut(s)	1434, 1688, 1757, 2076, 2125, 2155, 2191
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	117, 1549, 2560
MmeI	TCCRAC	3 cut(s)	524, 1188, 2176
Mph1103I	ATGCAT	1 cut(s)	1578
MroNI	GCCGGC	1 cut(s)	1823
MroXI	GAANNNNTTC	2 cut(s)	612, 2510
MseI	TTAA	8 cut(s)	540, 774, 954, 993, 1134, 1524, 2112, 2222
MspA1I	CMGCKG	1 cut(s)	2686
MspI	CCGG	8 cut(s)	6, 69, 127, 239, 1470, 1689, 1824, 2030
MspR9I	CCNGG	9 cut(s)	70, 546, 1278, 1440, 1470, 1690, 2078, 2272, 2317
MunI	CAATTG	2 cut(s)	1448, 2042
Mva1269I	GAATGC	4 cut(s)	349, 774, 2025, 2469
MvaI	CCWGG	6 cut(s)	546, 1278, 1440, 2078, 2272, 2317
MvnI	CGCG	2 cut(s)	159, 2164
MwoI	GCNNNNNNNGC	6 cut(s)	22, 1724, 1733, 2258, 2267, 2495
NaeI	GCCGGC	1 cut(s)	1825
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	3 cut(s)	70, 1470, 1690
NcoI	CCATGG	1 cut(s)	168
NgoMIV	GCCGGC	1 cut(s)	1823
NheI	GCTAGC	3 cut(s)	307, 1640, 2054
NlaIII	CATG	6 cut(s)	172, 322, 1197, 1958, 2009, 2174
NlaIV	GGNNCC	9 cut(s)	67, 237, 1687, 1904, 1983, 2034, 2075, 2168, 2712
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	4 cut(s)	109, 760, 818, 1472
NsiI	ATGCAT	1 cut(s)	1578
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	4 cut(s)	349, 774, 2025, 2469
PdiI	GCCGGC	1 cut(s)	1825
PdmI	GAANNNNTTC	2 cut(s)	612, 2510
PfeI	GAWTC	3 cut(s)	1708, 1912, 1975
Pfl23II	CGTACG	1 cut(s)	558
PleI	GAGTC	3 cut(s)	116, 1548, 2560
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	3 cut(s)	116, 1548, 2560
Ppu21I	YACGTR	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	1138
PsiI	TTATAA	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	1138
Psp6I	CCWGG	6 cut(s)	544, 1276, 1438, 2076, 2270, 2315
PspFI	CCCAGC	3 cut(s)	1535, 1843, 2682
PspGI	CCWGG	6 cut(s)	544, 1276, 1438, 2076, 2270, 2315
PspLI	CGTACG	1 cut(s)	558
PspN4I	GGNNCC	9 cut(s)	67, 237, 1687, 1904, 1983, 2034, 2075, 2168, 2712
PspPPI	RGGWCCY	1 cut(s)	1138
PsrI	GAACNNNNNNTAC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	2344
PstNI	CAGNNNCTG	2 cut(s)	920, 2411
PsuI	RGATCY	1 cut(s)	1294
PvuII	CAGCTG	1 cut(s)	2686
RigI	GGCCGGCC	1 cut(s)	1827
RsaI	GTAC	6 cut(s)	355, 560, 589, 876, 903, 1273
RsaNI	GTAC	6 cut(s)	354, 559, 588, 875, 902, 1272
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	8 cut(s)	540, 774, 954, 993, 1134, 1524, 2112, 2222
ScaI	AGTACT	4 cut(s)	355, 589, 876, 1273
SchI	GAGTC	3 cut(s)	117, 1549, 2560
ScrFI	CCNGG	9 cut(s)	70, 546, 1278, 1440, 1470, 1690, 2078, 2272, 2317
SduI	GDGCHC	7 cut(s)	1434, 1688, 1757, 2076, 2125, 2155, 2191
SfaNI	GCATC	7 cut(s)	154, 858, 863, 1495, 1745, 1960, 2166
SfcI	CTRYAG	2 cut(s)	2099, 2340
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	5 cut(s)	449, 1138, 1343, 1995, 2166
SmlI	CTYRAG	3 cut(s)	603, 1167, 1960
SmoI	CTYRAG	3 cut(s)	603, 1167, 1960
SpeI	ACTAGT	1 cut(s)	1775
SsiI	CCGC	8 cut(s)	23, 29, 63, 114, 159, 1428, 2164, 2609
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	3 cut(s)	55, 1668, 1801
StyD4I	CCNGG	9 cut(s)	68, 544, 1276, 1438, 1468, 1688, 2076, 2270, 2315
StyI	CCWWGG	2 cut(s)	168, 1064
TaaI	ACNGT	5 cut(s)	747, 1478, 1617, 2134, 2392
TaiI	ACGT	4 cut(s)	144, 303, 560, 564
TaqI	TCGA	7 cut(s)	534, 1026, 1032, 1119, 1528, 2357, 2461
TaqII	GACCGA	1 cut(s)	1983
TatI	WGTACW	4 cut(s)	353, 587, 874, 1271
TauI	GCSGC	3 cut(s)	32, 66, 162
TfiI	GAWTC	3 cut(s)	1708, 1912, 1975
Tru1I	TTAA	8 cut(s)	540, 774, 954, 993, 1134, 1524, 2112, 2222
Tru9I	TTAA	8 cut(s)	540, 774, 954, 993, 1134, 1524, 2112, 2222
TscAI	CASTG	2 cut(s)	1025, 1384
TseFI	GTSAC	4 cut(s)	109, 760, 818, 1472
Tsp45I	GTSAC	4 cut(s)	109, 760, 818, 1472
TspDTI	ATGAA	9 cut(s)	396, 521, 1064, 1281, 1925, 1929, 1935, 2230, 2503
TspRI	CASTG	2 cut(s)	1025, 1384
VneI	GTGCAC	2 cut(s)	2151, 2187
VpaK11BI	GGWCC	5 cut(s)	449, 1138, 1343, 1995, 2166
XagI	CCTNNNNNAGG	2 cut(s)	993, 1145
XapI	RAATTY	3 cut(s)	612, 1160, 2425
XbaI	TCTAGA	1 cut(s)	1225
XmnI	GAANNNNTTC	2 cut(s)	612, 2510
ZrmI	AGTACT	4 cut(s)	355, 589, 876, 1273
Zsp2I	ATGCAT	1 cut(s)	1578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.