Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354373.1

Orthogroup ID

OG0007854

Physical Location & Seq

Genomic Coordinates Reverse (-)

258 .. 842

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354373.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcaggggagtgcacaagttggaattggtcaaacaccaagttctttaaacaaccaacagagtttcataattgctgctcagcgagctgctcaggccaggcagtcttcaccaatgacagcacaaaatcaaactcccagaaccaggccatctttgtctgtaaatgctgcagggtttagaggatcggcaggggatcagcgtggaaacattggaggaactgtccaagcagtttcagggactgatgggttggggaattcaccatctgaacagaattggcgaccaacaggtcgaatgcgtggaagtctctcaggtcaggcttatagtgctgctttgaaccagttcataattcggccaacccaaccaactgaaactgcgagacctgcaccacacctgactcctccctcacacctgaccactccatcacacctgacccctcctccacacctgacccctcccccacacctgacccgtcctccacacctgacccgttcctcacacctgacctctccaccatctgttgttccatcccagctgcctactaatatgagcgctcaggttcctcaactacctaatagtcatcctcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009893 GO:0009987 GO:0010033 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0031323 GO:0031325 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051176 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

zf-MIZ

Protein Analysis

194

Amino Acids

20.4

Weight (kDa)

12.0

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41580
fragaria_vesca	FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250 FvH4_5g03250
malus_domestica	MD06G1091800.v1.1 MD14G1112600.v1.1
prunus_persica	Prupe.5G107000_v2.0.a1 Prupe.5G107000_v2.0.a1
pyrus_communis	pycom06g08790 pycom14g10780
rosa_chinensis	RchiOBHm_Chr7g0196521
rosa_multiflora	Rmu_co8354373.1_g000001 Rmu_co8377057.1_g000001 Rmu_sc0013350.1_g000009 Rmu_sc0019310.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259230
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158500 Rh7BG160500 Rh7CG166900 Rh7DG159700
rosa_wichuraiana	Rw7G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	187, 198
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	250
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	95, 140
AluBI	AGCT	2 cut(s)	86, 529
AluI	AGCT	2 cut(s)	86, 529
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	305, 367
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	187, 198
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	3 cut(s)	93, 143, 347
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	5 cut(s)	74, 86, 164, 323, 529
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	548
AsuHPI	GGTGA	2 cut(s)	99, 246
BaeGI	GKGCMC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	5 cut(s)	61, 73, 151, 310, 516
BccI	CCATC	6 cut(s)	154, 233, 265, 424, 517, 529
BciT130I	CCWGG	2 cut(s)	97, 142
BcoDI	GTCTC	2 cut(s)	305, 367
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	5 cut(s)	75, 87, 165, 324, 530
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	5 cut(s)	76, 88, 166, 325, 531
Bme1390I	CCNGG	2 cut(s)	97, 142
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	97, 142
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	2 cut(s)	90, 549
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	6 cut(s)	201, 231, 418, 448, 454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	97, 142
BseGI	GGATG	2 cut(s)	521, 574
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	4 cut(s)	92, 104, 318, 563
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	384, 423
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	5 cut(s)	61, 73, 151, 310, 516
BseYI	CCCAGC	1 cut(s)	525
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	95, 145, 349
BsiHKAI	GWGCWC	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	305, 367
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	95, 145, 349
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	179, 190
Bsp1720I	GCTNAGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	95, 145, 349
BspCNI	CTCAG	4 cut(s)	91, 103, 317, 562
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	187, 198
BspTNI	GGTCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	179, 190
Bst2UI	CCWGG	2 cut(s)	97, 142
Bst4CI	ACNGT	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	78, 90, 304, 549
BstF5I	GGATG	2 cut(s)	521, 574
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	2 cut(s)	182, 193
BstMAI	GTCTC	2 cut(s)	305, 367
BstMBI	GATC	2 cut(s)	179, 190
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 320, 377
BstNI	CCWGG	2 cut(s)	97, 142
BstSCI	CCNGG	2 cut(s)	95, 140
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	5 cut(s)	61, 73, 151, 310, 516
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	95, 145, 349
BtsCI	GGATG	2 cut(s)	521, 574
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	548
CviJI	RGCY	6 cut(s)	86, 95, 145, 314, 349, 529
CviKI_1	RGCY	6 cut(s)	86, 95, 145, 314, 349, 529
DdeI	CTNAG	4 cut(s)	78, 90, 304, 549
DpnI	GATC	2 cut(s)	181, 192
DpnII	GATC	2 cut(s)	179, 190
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	282
DseDI	GACNNNNNNGTC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	367
Eco47III	AGCGCT	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	95, 140
FaiI	YATR	4 cut(s)	68, 318, 341, 542
FaqI	GGGAC	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	75, 87, 165, 324, 530
FokI	GGATG	2 cut(s)	508, 561
Fsp4HI	GCNGC	5 cut(s)	75, 87, 165, 324, 530
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	5 cut(s)	75, 87, 165, 324, 530
GsaI	CCCAGC	1 cut(s)	529
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	95, 145, 349
HhaI	GCGC	1 cut(s)	548
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	2 cut(s)	99, 246
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	4, 14, 167, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 320, 377
HpyF3I	CTNAG	4 cut(s)	78, 90, 304, 549
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	179, 190
Lsp1109I	GCAGC	5 cut(s)	61, 73, 151, 310, 516
MalI	GATC	2 cut(s)	181, 192
MboI	GATC	2 cut(s)	179, 190
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	5 cut(s)	24, 69, 250, 268, 342
MlyI	GAGTC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	529
MspR9I	CCNGG	2 cut(s)	97, 142
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	2 cut(s)	97, 142
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 320, 377
NdeII	GATC	2 cut(s)	179, 190
NlaIV	GGNNCC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	76, 88, 166, 325, 531
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	95, 140
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	95, 140
PspN4I	GGNNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	5 cut(s)	75, 87, 165, 324, 530
Sau3AI	GATC	2 cut(s)	179, 190
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	97, 142
SduI	GDGCHC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	5 cut(s)	24, 69, 250, 268, 342
StyD4I	CCNGG	2 cut(s)	95, 140
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	286
TasI	AATT	5 cut(s)	24, 69, 250, 268, 342
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseI	GCWGC	5 cut(s)	74, 86, 164, 323, 529
TspDTI	ATGAA	2 cut(s)	55, 328
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.