pycom14g12070

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012340
Physical Location & Seq
Forward (+)
15150081 .. 15152541
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
ATGGGAAACATGGAAAAATCTGAAAGAGCCAAAGAAAGAAAAGAAAAGAGACTCCAAGAAATCTCCCTCCTCAGAACCATTCCTTATTCCGATCACCAGAGGTGGTGGTCAGCGGAGACCGTTGCGGTGGTGACTGGGGGTAACAGGGGGATTGGGTTTGAGATTTCGAAGCAGCTTGCGGCACAAGGGGTGACTGTTGTACTCACATCCAGAGACCACAGTGTGGGGCTTGAAGCGGCTAAGGTCTTCCAAGAAGGTGGTTTCAATGTGTTTTGTCATCAGCTCGATGTGTTAGACACGGCGTCCATCACCGAGTTTTGTGACTGGTTGAAACAAAACTATGGTGGGTTGGATATTCTGATAAATAATGCAGCTGTTAATTTCAATCAGGGTTTTGATAATACTGTCGAGTATGCATCTCAGGTTATTACTACAAATTATTATGGCACCAAAAATATGATTCAAGCAATGATCCCCTTGATGAAACCTTCAGCCGCTGGAGCTCGTATGGTTAATGTGAGCTCAAGATTGGGTAGAATAAATGGCAAGCGGAGTAAAATTGAAGATGTGTGTTTGAGAGAGAAATTTAGCAATTTGGACACAATCACTGAGGAACTGATTGATCAAACAGTTTCCAGTTTTCTACAACAAGTACAAGATGGCACTTGGGAATCCGGTGGGTGGCCTAAAACGTTCACCGACTACTCGGTATCAAAACTTGCAGTCAACACTTACACCAGGCTGATGGCAAAGATGCTATCAGACAGACCAGAAGGCCAGAAAATTTATATCAACTGTTACTGCCCAGGTTGGGTGAAGACTGCTATGACAGGTTATGCTGGGAATATTTCAGTTGAAGCAGGGGCTGACACTGCAGTTTGGCTTGCCTTGCTTCCAGACCTGGCAGTAACGGGGAAGTTCTTCGCTGAAAGACGTGAGATAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.21

Weight (kDa)

6.36

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 181 2.3e-28 short chain dehydrogenase
KR PF08659 42 - 158 3.1e-08 KR domain
Epimerase PF01370 43 - 186 1.1e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 48 - 180 1.4e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 6 cut(s) 113, 125, 179, 236, 495, 550
AclI AACGTT 1 cut(s) 692
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 2 cut(s) 584, 783
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 2 cut(s) 201, 654
AfiI CCNNNNNNNGG 3 cut(s) 223, 681, 811
AgsI TTSAA 7 cut(s) 233, 265, 331, 385, 464, 563, 857
AhdI GACNNNNNGTC 1 cut(s) 301
AjiI CACGTC 1 cut(s) 935
AjnI CCWGG 3 cut(s) 737, 805, 900
AluBI AGCT 6 cut(s) 175, 283, 374, 503, 522, 945
AluI AGCT 6 cut(s) 175, 283, 374, 503, 522, 945
Alw21I GWGCWC 2 cut(s) 505, 524
Alw26I GTCTC 3 cut(s) 43, 110, 207
AlwI GGATC 1 cut(s) 466
AlwNI CAGNNNCTG 2 cut(s) 497, 866
AoxI GGCC 2 cut(s) 683, 775
ApeKI GCWGC 2 cut(s) 172, 371
ApoI RAATTY 2 cut(s) 584, 783
Asp700I GAANNNNTTC 1 cut(s) 920
AsuHPI GGTGA 6 cut(s) 86, 142, 202, 301, 688, 826
AsuII TTCGAA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 505, 524
BbsI GAAGAC 2 cut(s) 238, 824
Bbv12I GWGCWC 2 cut(s) 505, 524
BbvI GCAGC 2 cut(s) 184, 383
BccI CCATC 3 cut(s) 314, 653, 739
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 3 cut(s) 739, 807, 902
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 43, 110, 207
BfmI CTRYAG 1 cut(s) 873
BisI GCNGC 5 cut(s) 173, 180, 237, 372, 495
BlsI GCNGC 5 cut(s) 174, 181, 238, 373, 496
Bme1390I CCNGG 3 cut(s) 739, 807, 902
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgBI CACGTC 1 cut(s) 935
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 3 cut(s) 739, 807, 902
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 425, 744
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 238, 824
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 2 cut(s) 110, 207
BsaJI CCNNGG 1 cut(s) 805
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 681, 811
Bse1I ACTGG 3 cut(s) 139, 329, 636
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 3 cut(s) 739, 807, 902
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 223, 681, 811
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 85, 434, 600
BseNI ACTGG 3 cut(s) 139, 329, 636
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 184, 383
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 2 cut(s) 685, 777
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 2 cut(s) 505, 524
BsiSI CCGG 1 cut(s) 675
BslI CCNNNNNNNGG 3 cut(s) 223, 681, 811
BsmAI GTCTC 3 cut(s) 43, 110, 207
BsnI GGCC 2 cut(s) 685, 777
Bso31I GGTCTC 2 cut(s) 110, 207
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 505, 524
Bsp143I GATC 3 cut(s) 91, 471, 622
BspACI CCGC 6 cut(s) 113, 125, 179, 236, 495, 550
BspANI GGCC 2 cut(s) 685, 777
BspCNI CTCAG 3 cut(s) 84, 433, 601
BspLI GGNNCC 1 cut(s) 448
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 2 cut(s) 110, 207
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 3 cut(s) 139, 329, 636
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 3 cut(s) 91, 471, 622
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 3 cut(s) 739, 807, 902
Bst4CI ACNGT 6 cut(s) 121, 196, 221, 406, 631, 797
BstACI GRCGYC 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 177, 548, 885
BstDEI CTNAG 4 cut(s) 71, 240, 420, 609
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 94, 474, 625
BstMAI GTCTC 3 cut(s) 43, 110, 207
BstMBI GATC 3 cut(s) 91, 471, 622
BstMWI GCNNNNNNNGC 3 cut(s) 500, 872, 889
BstNI CCWGG 3 cut(s) 739, 807, 902
BstSCI CCNGG 3 cut(s) 737, 805, 900
BstSFI CTRYAG 1 cut(s) 873
BstV1I GCAGC 2 cut(s) 184, 383
BstV2I GAAGAC 2 cut(s) 238, 824
BstXI CCANNNNNNTGG 2 cut(s) 257, 745
BsuRI GGCC 2 cut(s) 685, 777
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 3 cut(s) 226, 606, 870
Cac8I GCNNGC 3 cut(s) 177, 548, 885
CaiI CAGNNNCTG 2 cut(s) 497, 866
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 200, 653
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 200, 653
DdeI CTNAG 4 cut(s) 71, 240, 420, 609
DpnI GATC 3 cut(s) 93, 473, 624
DpnII GATC 3 cut(s) 91, 471, 622
DraIII CACNNNGTG 1 cut(s) 223
DriI GACNNNNNGTC 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 301
Ecl136II GAGCTC 2 cut(s) 503, 522
Eco24I GRGCYC 2 cut(s) 505, 524
Eco31I GGTCTC 2 cut(s) 110, 207
Eco53kI GAGCTC 2 cut(s) 503, 522
Eco57I CTGAAG 1 cut(s) 474
EcoICRI GAGCTC 2 cut(s) 503, 522
EcoRII CCWGG 3 cut(s) 737, 805, 900
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 505, 524
FaeI CATG 1 cut(s) 13
FaiI YATR 9 cut(s) 11, 342, 414, 444, 458, 509, 789, 827, 837
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 173, 180, 237, 372, 495
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 505, 524
Fsp4HI GCNGC 5 cut(s) 173, 180, 237, 372, 495
GluI GCNGC 5 cut(s) 173, 180, 237, 372, 495
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 2 cut(s) 685, 777
HapII CCGG 1 cut(s) 675
HgaI GACGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 3 cut(s) 51, 460, 671
HpaII CCGG 1 cut(s) 675
HphI GGTGA 6 cut(s) 86, 142, 202, 301, 688, 826
Hpy166II GTNNAC 2 cut(s) 696, 727
Hpy188I TCNGA 5 cut(s) 22, 74, 91, 360, 763
Hpy188III TCNNGA 3 cut(s) 210, 525, 896
Hpy8I GTNNAC 2 cut(s) 696, 727
HpyAV CCTTC 3 cut(s) 248, 498, 767
HpyCH4III ACNGT 6 cut(s) 121, 196, 221, 406, 631, 797
HpyCH4IV ACGT 2 cut(s) 692, 934
HpyCH4V TGCA 4 cut(s) 371, 416, 722, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 872, 889
HpyF3I CTNAG 4 cut(s) 71, 240, 420, 609
HpySE526I ACGT 2 cut(s) 692, 934
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 91, 471, 622
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 2 cut(s) 184, 383
LweI GCATC 2 cut(s) 425, 744
MaeII ACGT 2 cut(s) 692, 934
MaeIII GTNAC 6 cut(s) 130, 140, 190, 320, 797, 907
MalI GATC 3 cut(s) 93, 473, 624
MboI GATC 3 cut(s) 91, 471, 622
MboII GAAGA 4 cut(s) 238, 575, 829, 913
MhlI GDGCHC 2 cut(s) 505, 524
MluCI AATT 6 cut(s) 379, 436, 558, 584, 592, 783
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 4 cut(s) 77, 80, 93, 604
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 2 cut(s) 378, 513
MspA1I CMGCKG 3 cut(s) 113, 374, 497
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 3 cut(s) 739, 807, 902
MvaI CCWGG 3 cut(s) 739, 807, 902
MwoI GCNNNNNNNGC 3 cut(s) 500, 872, 889
NdeII GATC 3 cut(s) 91, 471, 622
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 3 cut(s) 130, 190, 320
NsiI ATGCAT 1 cut(s) 418
NspV TTCGAA 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 460, 671
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 5 cut(s) 174, 181, 238, 373, 496
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp124BI GAGCTC 2 cut(s) 505, 524
Psp1406I AACGTT 1 cut(s) 692
Psp6I CCWGG 3 cut(s) 737, 805, 900
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 3 cut(s) 737, 805, 900
PspN4I GGNNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 2 cut(s) 497, 866
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 201, 654
RsaNI GTAC 2 cut(s) 200, 653
SacI GAGCTC 2 cut(s) 505, 524
SaqAI TTAA 2 cut(s) 378, 513
SatI GCNGC 5 cut(s) 173, 180, 237, 372, 495
Sau3AI GATC 3 cut(s) 91, 471, 622
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 739, 807, 902
SduI GDGCHC 2 cut(s) 505, 524
SfaNI GCATC 2 cut(s) 425, 744
SfcI CTRYAG 1 cut(s) 873
SfuI TTCGAA 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 6 cut(s) 379, 436, 558, 584, 592, 783
SsiI CCGC 6 cut(s) 113, 125, 179, 236, 495, 550
SspI AATATT 1 cut(s) 847
SstI GAGCTC 2 cut(s) 505, 524
StyD4I CCNGG 3 cut(s) 737, 805, 900
TaaI ACNGT 6 cut(s) 121, 196, 221, 406, 631, 797
TaiI ACGT 2 cut(s) 695, 937
TaqI TCGA 3 cut(s) 167, 285, 408
TasI AATT 6 cut(s) 379, 436, 558, 584, 592, 783
TatI WGTACW 2 cut(s) 199, 652
TauI GCSGC 3 cut(s) 182, 239, 497
TfiI GAWTC 2 cut(s) 460, 671
Tru1I TTAA 2 cut(s) 378, 513
Tru9I TTAA 2 cut(s) 378, 513
TscAI CASTG 3 cut(s) 226, 613, 877
TseFI GTSAC 3 cut(s) 130, 190, 320
TseI GCWGC 2 cut(s) 172, 371
Tsp45I GTSAC 3 cut(s) 130, 190, 320
TspDTI ATGAA 1 cut(s) 497
TspRI CASTG 3 cut(s) 226, 613, 877
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 2 cut(s) 584, 783
XmnI GAANNNNTTC 1 cut(s) 920
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.