Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

15943309 .. 15947293

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAGCCATAGCTCGCGTCTCCAGAAAAGCCCTAACCTCCTTCTCCAGCTCAGCCCATCCATCCGCCTTCCACCGCACCTTCGCCGCCGAAGCAGCAAAAGCCGCGACCATAACACCCTCGCCGGATCGGATCAAATGGGACTACAGAGGTCAGAGAAGGATAATTCCACTCGGCCAGTGGCTCCCGAAGATCGCCGTCGACGCTTACGTGGCACCCAACGTGGTCTTGGCGGGTCAGGTCACGGTCTGCGACGGAGCATCCGTTTGGCCCGGGTCGGTCCTCCGCGGCGATCTCAATAAGATCACCGTCGGATTCTGCTCCAATGTTCAGGAACGCTGCGTCCTCCACGCCGCTTGGTCTTCCCCAACAGGACTTCCAGCAGAGACATCCATTGAGAGGTTTGTGACTATTGGCGCATACAGTCTGTTGCGGTCCTGCACAATTGAGCCAGAATGCATTATCGGGCAACATTCGATCCTAATGGAAGGTTCCTTGGTGGAGACCCACGCTATCCTTGAAGCTGGATCTGTGGTTCCCCCGGGAAGGAGAATTCCAACTGGTGAACTTTGGGCTGGAAACCCGGCAAGGTTTGTCCGAACTCTGACACATGAAGAGACCTTGGAGATCCCGAAACTCGCTGTCGCAATAAACGATCTAAGCAAAGAATATTTCCAAGAATTCCTCCCGTATTCCACAGTATATTTGGAGGTTGAAAAGTTCAAGAAATCTTTGGGGATTTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

250

Amino Acids

27.13

Weight (kDa)

8.27

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	3 cut(s)	18, 107, 288
AciI	CCGC	9 cut(s)	66, 76, 87, 105, 233, 286, 288, 354, 433
AclWI	GGATC	5 cut(s)	135, 140, 472, 535, 622
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	552, 680
AfiI	CCNNNNNNNGG	2 cut(s)	399, 546
AgsI	TTSAA	3 cut(s)	521, 716, 724
AloI	GAACNNNNNNTCC	4 cut(s)	327, 359, 519, 551
AluBI	AGCT	3 cut(s)	14, 51, 524
AluI	AGCT	3 cut(s)	14, 51, 524
Alw26I	GTCTC	4 cut(s)	25, 380, 497, 611
AlwI	GGATC	5 cut(s)	135, 140, 472, 535, 622
Ama87I	CYCGRG	2 cut(s)	272, 541
AoxI	GGCC	2 cut(s)	175, 269
ApeKI	GCWGC	3 cut(s)	5, 95, 339
ApoI	RAATTY	2 cut(s)	552, 680
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	3 cut(s)	270, 280, 435
AsuC2I	CCSGG	5 cut(s)	273, 274, 542, 543, 584
AsuHPI	GGTGA	2 cut(s)	298, 575
AvaI	CYCGRG	2 cut(s)	272, 541
AvaII	GGWCC	2 cut(s)	280, 435
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	17, 107, 326
BccI	CCATC	2 cut(s)	66, 70
BceAI	ACGGC	1 cut(s)	182
BcnI	CCSGG	5 cut(s)	273, 274, 542, 543, 584
BcoDI	GTCTC	4 cut(s)	25, 380, 497, 611
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	7 cut(s)	6, 87, 96, 105, 289, 340, 354
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	7 cut(s)	7, 88, 97, 106, 290, 341, 355
Bme1390I	CCNGG	5 cut(s)	273, 274, 542, 543, 584
Bme18I	GGWCC	2 cut(s)	280, 435
BmeT110I	CYCGRG	2 cut(s)	272, 541
BmgT120I	GGNCC	3 cut(s)	270, 280, 435
BmiI	GGNNCC	4 cut(s)	185, 216, 493, 537
BmrFI	CCNGG	5 cut(s)	273, 274, 542, 543, 584
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	2 cut(s)	7, 31
Bpu1102I	GCTNAGC	1 cut(s)	52
BpuMI	CCSGG	5 cut(s)	273, 274, 542, 543, 584
BsaAI	YACGTR	1 cut(s)	211
BsaI	GGTCTC	2 cut(s)	497, 611
BsaJI	CCNNGG	6 cut(s)	272, 286, 495, 540, 541, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 546
Bse1I	ACTGG	2 cut(s)	178, 565
BseDI	CCNNGG	6 cut(s)	272, 286, 495, 540, 541, 621
BseGI	GGATG	4 cut(s)	58, 62, 260, 389
BseLI	CCNNNNNNNGG	2 cut(s)	399, 546
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	178, 565
BseXI	GCAGC	3 cut(s)	17, 107, 326
BsgI	GTGCAG	1 cut(s)	424
Bsh1236I	CGCG	3 cut(s)	18, 107, 288
BshFI	GGCC	2 cut(s)	177, 271
BshNI	GGYRCC	1 cut(s)	214
BsiHKCI	CYCGRG	2 cut(s)	272, 541
BsiSI	CCGG	4 cut(s)	125, 273, 542, 584
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	399, 546
BsmAI	GTCTC	4 cut(s)	25, 380, 497, 611
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	177, 271
Bso31I	GGTCTC	2 cut(s)	497, 611
BsoBI	CYCGRG	2 cut(s)	272, 541
Bsp143I	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	9 cut(s)	66, 76, 87, 105, 233, 286, 288, 354, 433
BspANI	GGCC	2 cut(s)	177, 271
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	3 cut(s)	18, 107, 288
BspLI	GGNNCC	4 cut(s)	185, 216, 493, 537
BspPI	GGATC	5 cut(s)	135, 140, 472, 535, 622
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	2 cut(s)	497, 611
BsrI	ACTGG	2 cut(s)	178, 565
BssECI	CCNNGG	6 cut(s)	272, 286, 495, 540, 541, 621
BssMI	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
BssT1I	CCWWGG	2 cut(s)	495, 621
Bst4CI	ACNGT	4 cut(s)	247, 310, 425, 700
Bst6I	CTCTTC	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	52, 659
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	4 cut(s)	58, 62, 260, 389
BstFNI	CGCG	3 cut(s)	18, 107, 288
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	9 cut(s)	130, 135, 195, 295, 306, 480, 530, 630, 658
BstMAI	GTCTC	4 cut(s)	25, 380, 497, 611
BstMBI	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 92, 95, 101, 104, 203, 212
BstSCI	CCNGG	5 cut(s)	271, 272, 540, 541, 582
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	3 cut(s)	18, 107, 288
BstV1I	GCAGC	3 cut(s)	17, 107, 326
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	527, 627
BstYI	RGATCY	2 cut(s)	527, 627
BsuRI	GGCC	2 cut(s)	177, 271
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	4 cut(s)	58, 62, 260, 389
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	270, 280, 435
Cfr42I	CCGCGG	1 cut(s)	289
Cfr9I	CCCGGG	2 cut(s)	272, 541
CseI	GACGC	3 cut(s)	7, 212, 331
CspCI	CAANNNNNGTGG	2 cut(s)	338, 373
CviAII	CATG	1 cut(s)	611
DdeI	CTNAG	2 cut(s)	52, 659
DpnI	GATC	9 cut(s)	129, 134, 194, 294, 305, 479, 529, 629, 657
DpnII	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	495, 621
Eco31I	GGTCTC	2 cut(s)	497, 611
Eco47I	GGWCC	2 cut(s)	280, 435
Eco88I	CYCGRG	2 cut(s)	272, 541
EcoRI	GAATTC	2 cut(s)	552, 680
EcoT14I	CCWWGG	2 cut(s)	495, 621
EcoT22I	ATGCAT	1 cut(s)	461
ErhI	CCWWGG	2 cut(s)	495, 621
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	614
FaiI	YATR	5 cut(s)	11, 113, 421, 612, 703
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	610
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	6, 87, 96, 105, 289, 340, 354
FokI	GGATG	4 cut(s)	45, 49, 247, 376
Fsp4HI	GCNGC	7 cut(s)	6, 87, 96, 105, 289, 340, 354
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	7 cut(s)	6, 87, 96, 105, 289, 340, 354
GsuI	CTGGAG	2 cut(s)	7, 31
HaeIII	GGCC	2 cut(s)	177, 271
HapII	CCGG	4 cut(s)	125, 273, 542, 584
HgaI	GACGC	3 cut(s)	7, 212, 331
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	614
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	4 cut(s)	125, 273, 542, 584
HphI	GGTGA	2 cut(s)	298, 575
Hpy166II	GTNNAC	2 cut(s)	202, 566
Hpy188I	TCNGA	5 cut(s)	132, 156, 314, 599, 606
Hpy188III	TCNNGA	5 cut(s)	24, 187, 332, 631, 724
Hpy8I	GTNNAC	2 cut(s)	202, 566
Hpy99I	CGWCG	4 cut(s)	203, 206, 257, 314
HpyAV	CCTTC	6 cut(s)	52, 79, 91, 153, 482, 540
HpyCH4III	ACNGT	4 cut(s)	247, 310, 425, 700
HpyCH4IV	ACGT	2 cut(s)	210, 222
HpyCH4V	TGCA	2 cut(s)	441, 459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 92, 95, 101, 104, 203, 212
HpyF3I	CTNAG	2 cut(s)	52, 659
HpySE526I	ACGT	2 cut(s)	210, 222
Hsp92II	CATG	1 cut(s)	614
HspAI	GCGC	1 cut(s)	417
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
LmnI	GCTCC	3 cut(s)	189, 257, 326
Lsp1109I	GCAGC	3 cut(s)	17, 107, 326
LweI	GCATC	1 cut(s)	269
MaeII	ACGT	2 cut(s)	210, 222
MaeIII	GTNAC	2 cut(s)	241, 406
MalI	GATC	9 cut(s)	129, 134, 194, 294, 305, 479, 529, 629, 657
MboI	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
MboII	GAAGA	3 cut(s)	202, 354, 626
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	2 cut(s)	527, 627
MluCI	AATT	4 cut(s)	165, 444, 552, 680
MmeI	TCCRAC	2 cut(s)	292, 581
MnlI	CCTC	8 cut(s)	49, 130, 143, 293, 356, 393, 695, 703
Mph1103I	ATGCAT	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	4 cut(s)	125, 273, 542, 584
MspR9I	CCNGG	5 cut(s)	273, 274, 542, 543, 584
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	461
MvnI	CGCG	3 cut(s)	18, 107, 288
MwoI	GCNNNNNNNGC	7 cut(s)	11, 92, 95, 101, 104, 203, 212
NciI	CCSGG	5 cut(s)	273, 274, 542, 543, 584
NdeII	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
NlaIII	CATG	1 cut(s)	614
NlaIV	GGNNCC	4 cut(s)	185, 216, 493, 537
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	241, 406
NsiI	ATGCAT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 261, 651
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	7 cut(s)	7, 88, 97, 106, 290, 341, 355
Ppu21I	YACGTR	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	185, 216, 493, 537
PspPI	GGNCC	3 cut(s)	270, 280, 435
PsuI	RGATCY	2 cut(s)	527, 627
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	7 cut(s)	6, 87, 96, 105, 289, 340, 354
Sau3AI	GATC	9 cut(s)	127, 132, 192, 292, 303, 477, 527, 627, 655
Sau96I	GGNCC	3 cut(s)	270, 280, 435
ScrFI	CCNGG	5 cut(s)	273, 274, 542, 543, 584
SfaNI	GCATC	1 cut(s)	269
SfcI	CTRYAG	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	280, 435
SmaI	CCCGGG	2 cut(s)	274, 543
Sse9I	AATT	4 cut(s)	165, 444, 552, 680
SsiI	CCGC	9 cut(s)	66, 76, 87, 105, 233, 286, 288, 354, 433
SspI	AATATT	1 cut(s)	671
StyD4I	CCNGG	5 cut(s)	271, 272, 540, 541, 582
StyI	CCWWGG	2 cut(s)	495, 621
TaaI	ACNGT	4 cut(s)	247, 310, 425, 700
TaiI	ACGT	2 cut(s)	213, 225
TaqI	TCGA	2 cut(s)	201, 476
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	4 cut(s)	165, 444, 552, 680
TauI	GCSGC	4 cut(s)	89, 107, 291, 356
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	241, 406
TseI	GCWGC	3 cut(s)	5, 95, 339
Tsp45I	GTSAC	2 cut(s)	241, 406
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	2 cut(s)	253, 270
TspMI	CCCGGG	2 cut(s)	272, 541
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	280, 435
XapI	RAATTY	2 cut(s)	552, 680
XcmI	CCANNNNNNNNNTGG	3 cut(s)	177, 226, 703
XmaI	CCCGGG	2 cut(s)	272, 541
XmiI	GTMKAC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.