Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

17554526 .. 17556690

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCATTCATTAAGCCTCAAAGTCTGCAGTAATTGCTGTCCGGGGACGACGAGGACGTGTTTGCCGGGGCGGGGGAGCTTCGGCGTCGCGAATTCGGAGGTCCGGAAGTTGAGAGTCGGGTCGGGGCGTGTGGATTTCGGGAAATCGGGTGGGGTCGTGGCGTGCGCCGCGGAGAGGAGCGGGGGGAATGGGTGGAGTGGAAGTCGGAGTTCGAGTCCGAGTTCCGGTGCGGGTCAGAAACCGAGTTCGTTTCTGTCTCGGAGTCAGAGCTGGGCTTTGTTGAAGCAGCAAATGGAGGTCGCGTCGAAATCTGAGGATTACGAGGAGGCGGCGAGGATTCGGGACTCGTTGAAGTTGTTAGAAGAGGAAGAGCCGGTTTTGTGGCTCCGAAGAAGGATAAAGGAGGCAATTGCTGAAGAGAGATTTGAGGACGCCGCGAAATATCGAGATGAGCTAAAGGAAATAGCCCCTTACTCTTTCTTGAAATGTTCAAGTGATGCAACAACTTTGGGTATTCGGGTCCAAGTTAGGAGTGTGTTCATAGAGGGCAGAAGTCAGCCTTCGAAGGGGCAACACTTCTTTGCATATAGAATACGAATTACCAATAATTCAGATCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATCACGGATGCCAACGGAAAATCCGAAAATGTCTGGGGGATTGGTGTTATTGGTGAACAGCCAGTTATTCTTCCTCAAACGAGTTTTGAATACTCATCAGCTTGCCCATTAAGCACTCACAGTGGTAGAATGGAAGGTGAGTTTGAGATGAAACACATCAATAGGGTAAGTTCACAATCGTTTAACGTGGCAATTGCTCCCTTTGCCCTCTCGATATTGGAAGATGACATTGACACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

297

Amino Acids

32.72

Weight (kDa)

8.66

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	94 - 122	6.2e-07	UvrB/uvrC motif
DUF525	PF04379	184 - 267	3.9e-33	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	180
AccII	CGCG	4 cut(s)	89, 170, 302, 437
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	7 cut(s)	70, 168, 170, 180, 230, 329, 435
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	2 cut(s)	84, 432
AfiI	CCNNNNNNNGG	4 cut(s)	71, 174, 224, 566
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	283, 352, 484, 492, 626, 737
AjiI	CACGTC	1 cut(s)	57
AluBI	AGCT	4 cut(s)	78, 270, 454, 749
AluI	AGCT	4 cut(s)	78, 270, 454, 749
Alw26I	GTCTC	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	100, 520
AsuC2I	CCSGG	2 cut(s)	42, 66
AsuHPI	GGTGA	2 cut(s)	713, 797
AsuII	TTCGAA	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	100, 520
BbvI	GCAGC	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	42, 66
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	4 cut(s)	168, 287, 330, 435
BlsI	GCNGC	4 cut(s)	169, 288, 331, 436
Bme1390I	CCNGG	2 cut(s)	42, 66
Bme18I	GGWCC	2 cut(s)	100, 520
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	100, 520
BmiI	GGNNCC	2 cut(s)	386, 521
BmrFI	CCNGG	2 cut(s)	42, 66
BmsI	GCATC	2 cut(s)	487, 646
Bpu14I	TTCGAA	1 cut(s)	563
BpuMI	CCSGG	2 cut(s)	42, 66
BsaHI	GRCGYC	2 cut(s)	84, 432
BsaJI	CCNNGG	3 cut(s)	41, 65, 168
BsaWI	WCCGGW	2 cut(s)	102, 224
BsaXI	ACNNNNNCTCC	6 cut(s)	187, 199, 217, 229, 287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 174, 224, 566
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	710
BseAI	TCCGGA	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	41, 65, 168
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	4 cut(s)	71, 174, 224, 566
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	2 cut(s)	190, 338
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	4 cut(s)	89, 170, 302, 437
BsiSI	CCGG	5 cut(s)	41, 65, 103, 225, 374
BslFI	GGGAC	2 cut(s)	58, 356
BslI	CCNNNNNNNGG	4 cut(s)	71, 174, 224, 566
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	2 cut(s)	58, 356
BsmI	GAATGC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	563
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	613
Bsp68I	TCGCGA	1 cut(s)	89
BspACI	CCGC	7 cut(s)	70, 168, 170, 180, 230, 329, 435
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	102
BspFNI	CGCG	4 cut(s)	89, 170, 302, 437
BspLI	GGNNCC	2 cut(s)	386, 521
BspMAI	CTGCAG	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	363
BspT104I	TTCGAA	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	41, 65, 168
BssMI	GATC	1 cut(s)	613
BssNI	GRCGYC	2 cut(s)	84, 432
Bst4CI	ACNGT	1 cut(s)	770
Bst6I	CTCTTC	3 cut(s)	357, 363, 411
BstACI	GRCGYC	2 cut(s)	84, 432
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	163, 751
BstDEI	CTNAG	2 cut(s)	312, 632
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	4 cut(s)	89, 170, 302, 437
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 167, 759, 851
BstSCI	CCNGG	2 cut(s)	40, 64
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	4 cut(s)	89, 170, 302, 437
BstV1I	GCAGC	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	775
BtuMI	TCGCGA	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	163, 751
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	100, 520
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	3 cut(s)	73, 291, 440
DdeI	CTNAG	2 cut(s)	312, 632
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	357, 363, 411
EarI	CTCTTC	3 cut(s)	357, 363, 411
Eco47I	GGWCC	2 cut(s)	100, 520
Eco57I	CTGAAG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	542, 586, 588
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	2 cut(s)	58, 356
FauI	CCCGC	3 cut(s)	63, 173, 223
Fnu4HI	GCNGC	4 cut(s)	168, 287, 330, 435
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	4 cut(s)	168, 287, 330, 435
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	168, 287, 330, 435
GsaI	CCCAGC	1 cut(s)	274
HapII	CCGG	5 cut(s)	41, 65, 103, 225, 374
HgaI	GACGC	3 cut(s)	73, 291, 440
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	84, 432
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	5 cut(s)	114, 214, 262, 337, 344
HpaII	CCGG	5 cut(s)	41, 65, 103, 225, 374
HphI	GGTGA	2 cut(s)	713, 797
Hpy166II	GTNNAC	2 cut(s)	704, 821
Hpy188III	TCNNGA	7 cut(s)	88, 103, 139, 341, 446, 481, 859
Hpy8I	GTNNAC	2 cut(s)	704, 821
Hpy99I	CGWCG	3 cut(s)	52, 89, 307
HpyAV	CCTTC	5 cut(s)	387, 559, 570, 630, 776
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4IV	ACGT	2 cut(s)	56, 834
HpyCH4V	TGCA	4 cut(s)	4, 27, 500, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 167, 759, 851
HpyF3I	CTNAG	2 cut(s)	312, 632
HpySE526I	ACGT	2 cut(s)	56, 834
Hsp92I	GRCGYC	2 cut(s)	84, 432
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	613
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	4 cut(s)	75, 177, 390, 850
LpnPI	CCDG	9 cut(s)	54, 78, 116, 238, 256, 387, 633, 667, 723
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	487, 646
MaeII	ACGT	2 cut(s)	56, 834
MalI	GATC	1 cut(s)	615
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	1 cut(s)	613
MboII	GAAGA	6 cut(s)	374, 380, 402, 428, 710, 881
MfeI	CAATTG	2 cut(s)	408, 840
MluCI	AATT	6 cut(s)	31, 91, 408, 597, 607, 840
MlyI	GAGTC	4 cut(s)	123, 223, 271, 338
MmeI	TCCRAC	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	3 cut(s)	11, 758, 831
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	5 cut(s)	41, 65, 103, 225, 374
MspR9I	CCNGG	2 cut(s)	42, 66
MunI	CAATTG	2 cut(s)	408, 840
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	4 cut(s)	89, 170, 302, 437
MwoI	GCNNNNNNNGC	4 cut(s)	33, 167, 759, 851
NciI	CCSGG	2 cut(s)	42, 66
NdeII	GATC	1 cut(s)	613
NlaIV	GGNNCC	2 cut(s)	386, 521
NruI	TCGCGA	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 669
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	169, 288, 331, 436
PleI	GAGTC	4 cut(s)	122, 222, 270, 338
PpsI	GAGTC	4 cut(s)	122, 222, 270, 338
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	386, 521
PspPI	GGNCC	2 cut(s)	100, 520
PstI	CTGCAG	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	89
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	11, 758, 831
SatI	GCNGC	4 cut(s)	168, 287, 330, 435
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	2 cut(s)	100, 520
SchI	GAGTC	4 cut(s)	123, 223, 271, 338
ScrFI	CCNGG	2 cut(s)	42, 66
SfaNI	GCATC	2 cut(s)	487, 646
SfcI	CTRYAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	563
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	100, 520
Sse9I	AATT	6 cut(s)	31, 91, 408, 597, 607, 840
SsiI	CCGC	7 cut(s)	70, 168, 170, 180, 230, 329, 435
StyD4I	CCNGG	2 cut(s)	40, 64
TaaI	ACNGT	1 cut(s)	770
TaiI	ACGT	2 cut(s)	59, 837
TaqI	TCGA	5 cut(s)	212, 305, 445, 563, 860
TasI	AATT	6 cut(s)	31, 91, 408, 597, 607, 840
TauI	GCSGC	3 cut(s)	170, 332, 437
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	3 cut(s)	11, 758, 831
Tru9I	TTAA	3 cut(s)	11, 758, 831
TscAI	CASTG	1 cut(s)	775
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	529, 812
TspGWI	ACGGA	2 cut(s)	668, 678
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	100, 520
XapI	RAATTY	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.