pycom14g15160
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012122
Physical Location & Seq
Reverse (-)
17857004 .. 17858961
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGCTAGCAACATCTTCCTCCATTAAACCCCGCCCTCCTCCTCCTCCTCCTCCTCAAAGTCCATCGTCAACAACTCAAAACCCCATCAATTCATTCCTACCCATCAGCCGCCGCAGCCTCCTCGCCGCGCTCACGGTCTCCACCGCCGCCGCAACCCCATTTGCACACAATTTTCTCAGCCCCATGTCAGCACAAGAAGCAGCCTTTGCTCGTGGCCTATTCCAGATGCCCCCAGTCAGGCTCACCAACCGGTATTTTCTGGTGAGGGCAGGGGAGTCTGAGTACGAGAGCATAGGAGTAATCAACACGAATCCGGTTGCAAAGACTTCTGTCGATAACGGATTGTCGGAGAAAGGGAAGAAGCAGGCAGCGAGGTCAGCTTTCGATTTGAAGGAAATGGGGGCTTGTGACAAGAACTGTTGGATATGGCCTTCTATCACTCAGAGAGCTTACCAGGCCGCAGAGATCATTGCAGCCGTTAATGGGGTCAGTCGAAGTTATATCGTCCCAGAGTATAGCTTTCTCGACGCCCGTGGATTGGGGGCTTATGAAGGAAAGAACCTAGAAGCTGTTTCAGAAGTATATGCATCAGACACTCTTTCTCCCGCAATCAAGCCTCCCCCCATTGATGATGGAACCCCAAACGAGAGCGTCGCAGATGTATTCGTTCGGGTGATACAGCTCATGTCCATACTCGAGACTCAATACTCCGAAGACACTGTGATCATTGTCTCACCAGATTCAGACAATTTGACTGTCCTGCAAGCTGGTATAATTGGACTTGACTTGCGCAGGCACAGGGAACTTTCTTTTGCACCAGGAGAAGTCAGATTTGTTGATACCAATAGTGTACCTACTTACAAGCAACCTGCATCAGCTGTGTATAAATGCCTAAAACCACCAAATTGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

305

Amino Acids

32.92

Weight (kDa)

6.19

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 86 - 279 3.6e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 877
AccII CGCG 1 cut(s) 128
AciI CCGC 9 cut(s) 31, 109, 112, 126, 144, 147, 150, 459, 606
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 2 cut(s) 284, 852
AfiI CCNNNNNNNGG 3 cut(s) 237, 483, 538
AgeI ACCGGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 2 cut(s) 453, 817
AluBI AGCT 7 cut(s) 380, 449, 519, 569, 682, 767, 878
AluI AGCT 7 cut(s) 380, 449, 519, 569, 682, 767, 878
Alw26I GTCTC 3 cut(s) 142, 692, 736
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 3 cut(s) 214, 428, 456
ApeKI GCWGC 4 cut(s) 114, 200, 368, 473
AsiGI ACCGGT 1 cut(s) 249
AspLEI GCGC 2 cut(s) 130, 792
AsuHPI GGTGA 4 cut(s) 235, 274, 685, 726
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 695
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 126, 212, 380, 485
BccI CCATC 4 cut(s) 70, 92, 110, 626
BceAI ACGGC 1 cut(s) 461
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 455, 819
BclI TGATCA 1 cut(s) 723
BcoDI GTCTC 3 cut(s) 142, 692, 736
BfaI CTAG 2 cut(s) 5, 563
BfuAI ACCTGC 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 455, 819
BmeT110I CYCGRG 1 cut(s) 695
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 2 cut(s) 455, 819
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 3 cut(s) 216, 596, 881
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 227
BoxI GACNNNNGTC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 532
BsaWI WCCGGW 2 cut(s) 249, 313
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 586, 616
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 483, 538
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 455, 819
BseDI CCNNGG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 237, 483, 538
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 190, 270, 455
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 7 cut(s) 27, 30, 33, 36, 39, 42, 110
BseXI GCAGC 4 cut(s) 126, 212, 380, 485
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 216, 430, 458
BshTI ACCGGT 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 2 cut(s) 250, 314
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 237, 483, 538
BsmAI GTCTC 3 cut(s) 142, 692, 736
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 3 cut(s) 216, 430, 458
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 695
Bsp143I GATC 2 cut(s) 465, 723
BspACI CCGC 9 cut(s) 31, 109, 112, 126, 144, 147, 150, 459, 606
BspANI GGCC 3 cut(s) 216, 430, 458
BspCNI CTCAG 3 cut(s) 189, 271, 454
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 877
BspOI GCTAGC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 2 cut(s) 465, 723
BssNI GRCGYC 1 cut(s) 528
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 455, 819
Bst4CI ACNGT 4 cut(s) 136, 419, 721, 757
BstACI GRCGYC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 6, 366, 765, 794
BstDEI CTNAG 3 cut(s) 176, 279, 441
BstDSI CCRYGG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 2 cut(s) 130, 792
BstKTI GATC 2 cut(s) 468, 726
BstMAI GTCTC 3 cut(s) 142, 692, 736
BstMBI GATC 2 cut(s) 465, 723
BstMWI GCNNNNNNNGC 5 cut(s) 114, 197, 206, 377, 455
BstNI CCWGG 2 cut(s) 455, 819
BstPAI GACNNNNGTC 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 453, 817
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 126, 212, 380, 485
BstV2I GAAGAC 1 cut(s) 720
BsuRI GGCC 3 cut(s) 216, 430, 458
BtgI CCRYGG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 717
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 4 cut(s) 6, 366, 765, 794
CfoI GCGC 2 cut(s) 130, 792
Cfr10I RCCGGY 1 cut(s) 249
CseI GACGC 2 cut(s) 536, 640
Csp6I GTAC 2 cut(s) 283, 851
CspAI ACCGGT 1 cut(s) 249
CviAII CATG 2 cut(s) 184, 685
CviQI GTAC 2 cut(s) 283, 851
DdeI CTNAG 3 cut(s) 176, 279, 441
DpnI GATC 2 cut(s) 467, 725
DpnII GATC 2 cut(s) 465, 723
Eco31I GGTCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 453, 817
EcoT22I ATGCAT 1 cut(s) 589
FaeI CATG 2 cut(s) 187, 688
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 183, 684
FauI CCCGC 2 cut(s) 38, 613
FbaI TGATCA 1 cut(s) 723
FspBI CTAG 2 cut(s) 5, 563
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 2 cut(s) 129, 791
HaeIII GGCC 3 cut(s) 216, 430, 458
HapII CCGG 2 cut(s) 250, 314
HgaI GACGC 2 cut(s) 536, 640
HhaI GCGC 2 cut(s) 130, 792
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 2 cut(s) 187, 688
Hin6I GCGC 2 cut(s) 128, 790
HinP1I GCGC 2 cut(s) 128, 790
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 4 cut(s) 275, 310, 700, 740
HpaII CCGG 2 cut(s) 250, 314
HphI GGTGA 4 cut(s) 235, 274, 685, 726
Hpy166II GTNNAC 2 cut(s) 69, 851
Hpy188I TCNGA 8 cut(s) 280, 349, 444, 577, 592, 712, 745, 830
Hpy188III TCNNGA 3 cut(s) 223, 524, 697
Hpy8I GTNNAC 2 cut(s) 69, 851
Hpy99I CGWCG 2 cut(s) 530, 656
HpyAV CCTTC 3 cut(s) 385, 441, 545
HpyCH4III ACNGT 4 cut(s) 136, 419, 721, 757
HpyCH4V TGCA 7 cut(s) 164, 320, 473, 587, 763, 815, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 197, 206, 377, 455
HpyF3I CTNAG 3 cut(s) 176, 279, 441
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 2 cut(s) 187, 688
HspAI GCGC 2 cut(s) 128, 790
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 2 cut(s) 465, 723
Lsp1109I GCAGC 4 cut(s) 126, 212, 380, 485
LweI GCATC 3 cut(s) 216, 596, 881
MaeI CTAG 2 cut(s) 5, 563
MaeIII GTNAC 2 cut(s) 407, 908
MalI GATC 2 cut(s) 467, 725
MboI GATC 2 cut(s) 465, 723
MboII GAAGA 3 cut(s) 6, 370, 725
MluCI AATT 5 cut(s) 88, 169, 748, 774, 904
MlyI GAGTC 2 cut(s) 284, 694
MmeI TCCRAC 2 cut(s) 327, 401
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 2 cut(s) 24, 480
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 2 cut(s) 250, 314
MspR9I CCNGG 2 cut(s) 455, 819
MvaI CCWGG 2 cut(s) 455, 819
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 5 cut(s) 114, 197, 206, 377, 455
NdeII GATC 2 cut(s) 465, 723
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 187, 688
NlaIV GGNNCC 1 cut(s) 637
NmuCI GTSAC 1 cut(s) 407
NsbI TGCGCA 1 cut(s) 791
NsiI ATGCAT 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 695
PfeI GAWTC 2 cut(s) 310, 740
PinAI ACCGGT 1 cut(s) 249
PleI GAGTC 2 cut(s) 283, 694
PpsI GAGTC 2 cut(s) 283, 694
PshAI GACNNNNGTC 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 453, 817
PspGI CCWGG 2 cut(s) 453, 817
PspN4I GGNNCC 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 2 cut(s) 284, 852
RsaNI GTAC 2 cut(s) 283, 851
SaqAI TTAA 2 cut(s) 24, 480
Sau3AI GATC 2 cut(s) 465, 723
SchI GAGTC 2 cut(s) 284, 694
ScrFI CCNGG 2 cut(s) 455, 819
SfaNI GCATC 3 cut(s) 216, 596, 881
Sfr274I CTCGAG 1 cut(s) 695
SlaI CTCGAG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 5 cut(s) 88, 169, 748, 774, 904
SsiI CCGC 9 cut(s) 31, 109, 112, 126, 144, 147, 150, 459, 606
SspMI CTAG 2 cut(s) 5, 563
StyD4I CCNGG 2 cut(s) 453, 817
TaaI ACNGT 4 cut(s) 136, 419, 721, 757
TaqI TCGA 5 cut(s) 333, 384, 493, 525, 696
TasI AATT 5 cut(s) 88, 169, 748, 774, 904
TauI GCSGC 6 cut(s) 111, 114, 128, 149, 152, 461
TfiI GAWTC 2 cut(s) 310, 740
Tru1I TTAA 2 cut(s) 24, 480
Tru9I TTAA 2 cut(s) 24, 480
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 114, 200, 368, 473
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 81, 564
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 695
XspI CTAG 2 cut(s) 5, 563
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.