Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

19263025 .. 19264454

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTTGCTGCAGACATAGATCAGGATCTCAGTCGGGGTGAAAAGCTTCTGGGAAGTCTTGGGGGCATGTTCTCTAAGACGTGGAAGCCAAAGAGGACTCGCCCAATTAGTGGCCCTGTCATCACAGGAGATCACGCAGTCAGAAGGGGTAGCCAGGAGGAGAGGGAGAAGTTGGGACTGACTCCAGCACCCAAGGGAAGATCTAATCCCCGAACACTACCTGATGGACCAACCAGCGCCCTTCAGAAAGTTGAGGTTGAGAAGGCGAAGCAAGATGATGGATTGTCCGATTTAAGTGATCTGTTGGGAGAGCTGAAGGATATGGCTGTCGATATGGGGTCTGAAATTGAGAGGCATAACAAAGCTATAGACGGTGTCTACGATGATGTTGATGTGATAAATGGCCGTGTTAGAGATGCAACTCAACGTGGTCGTCGCTTGCTCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

7.97

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	227, 335
AfiI	CCNNNNNNNGG	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	46, 313, 365
AluI	AGCT	3 cut(s)	46, 313, 365
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	112, 403
ApeKI	GCWGC	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	113, 227
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	227
BccI	CCATC	2 cut(s)	218, 272
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	9, 366
BfoI	RGCGCY	1 cut(s)	240
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	113, 227
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	114, 405
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	114, 405
Bsp143I	GATC	5 cut(s)	19, 25, 130, 200, 298
BspANI	GGCC	2 cut(s)	114, 405
BspCNI	CTCAG	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	19, 25, 130, 200, 298
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	29, 75
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	5 cut(s)	22, 28, 133, 203, 301
BstMBI	GATC	5 cut(s)	19, 25, 130, 200, 298
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	2 cut(s)	9, 366
BstX2I	RGATCY	2 cut(s)	25, 200
BstYI	RGATCY	2 cut(s)	25, 200
BsuRI	GGCC	2 cut(s)	114, 405
BtrI	CACGTC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	113, 227
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	8 cut(s)	46, 88, 114, 153, 313, 326, 365, 405
CviKI_1	RGCY	8 cut(s)	46, 88, 114, 153, 313, 326, 365, 405
DdeI	CTNAG	2 cut(s)	29, 75
DpnI	GATC	5 cut(s)	21, 27, 132, 202, 300
DpnII	GATC	5 cut(s)	19, 25, 130, 200, 298
EaeI	YGGCCR	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	227, 335
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	17, 68, 323, 335, 357, 368
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	114, 405
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	97, 181
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	5 cut(s)	143, 246, 289, 343, 446
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	4 cut(s)	138, 251, 256, 310
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	2 cut(s)	80, 427
HpyCH4V	TGCA	2 cut(s)	11, 419
HpyF3I	CTNAG	2 cut(s)	29, 75
HpySE526I	ACGT	2 cut(s)	80, 427
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	19, 25, 130, 200, 298
LpnPI	CCDG	9 cut(s)	8, 35, 111, 129, 140, 167, 198, 234, 247
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	2 cut(s)	80, 427
MalI	GATC	5 cut(s)	21, 27, 132, 202, 300
MboI	GATC	5 cut(s)	19, 25, 130, 200, 298
MboII	GAAGA	1 cut(s)	210
MflI	RGATCY	2 cut(s)	25, 200
MluCI	AATT	2 cut(s)	105, 345
MlyI	GAGTC	2 cut(s)	91, 175
MnlI	CCTC	5 cut(s)	87, 151, 156, 247, 345
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
NdeII	GATC	5 cut(s)	19, 25, 130, 200, 298
NlaIII	CATG	1 cut(s)	70
NspI	RCATGY	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	91, 175
PpsI	GAGTC	2 cut(s)	91, 175
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	113, 227
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	25, 200
PsyI	GACNNNGTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	5 cut(s)	19, 25, 130, 200, 298
Sau96I	GGNCC	2 cut(s)	113, 227
SchI	GAGTC	2 cut(s)	91, 175
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	7 cut(s)	48, 83, 223, 258, 315, 367, 430
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	2 cut(s)	9, 366
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	2 cut(s)	105, 345
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	2 cut(s)	83, 430
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	105, 345
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseI	GCWGC	1 cut(s)	8
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.