pycom14g17550

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010862
Physical Location & Seq
Forward (+)
19440078 .. 19443629
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGGCGACACAGAGCTCGAATTCGAGCGAACGGCATGCCCTATCGGATACGAATCACAAACACTTATTCGTTATGAAGGAGTTTCTGTGGGGAGCTATTGCTGGAGCATTTGGGGAAGGAATGATGCATCCGGTCGACACCAAACCGAAGAGCATACTTCAGATGGTACGAGCGGTCTGGGTAGCCGATGGATTAAGAGGCTTTTATAGGGGCATAGCTCCGGGTGTCACTGGTTCTCTTGCAACTGGAGCAACTTATTTTGGTGTCATAGAGTCGACCAAAAAGTGGATTGAAGAATCACGTCCAAACCTTGAGGGACATTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGTTCTGTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGCACGGTGGCCTCTTGGAGTTCTGTTGTCATGAAAGATAATATCGCCATGAAGCCTGGTAGCCAAATGTATGGTTACTATACTGGGATGTTCCATGCTGGCTGCTCAATATGGAAGGAGCAGGGGCTAAGAGGATTATATGCAGGATACTGGTCCACACTGGCAAGGGATGTGCCTTTTGCTGGTCTAATGGTTATGTTTTACGAAGGCTTGAAAGATTTGACAGAGCATGGGAAGCAAAAATACATACGGGATCCAAATTTCCATTTTAATAGTTCCGTCGAGGGGCTTTTACTAGGAGGGTTGGCTGGTGGCATTAGTGCGTATCTTACCACTCCCTTGGATGTGATCGAAACAAGACTGCAAGTACAAGGATCAACCTTGAGGTACAAAGGCTGGTTGGATGCAATTCACAGCGTATGGAGGGCCGAAGGTGCTAAAGGGATGTTCAGAGGTAGCGTCCCCAGGATTACATGGTATGTTCCAGCTTCAGCACTTACGTTTATGGCCGTGGAATTTCTCAGAGAACATTTCAACGAAGGATTGAGCAACGATAACACCCGAGAAGTTGCTAGCGTGTCAGTGGAGAAAAAGGGATCGCCTTTACAAGGAGCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

345

Amino Acids

37.82

Weight (kDa)

8.68

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 21 - 99 1.4e-09 Mitochondrial carrier protein
Mito_carr PF00153 107 - 213 1.8e-17 Mitochondrial carrier protein
Mito_carr PF00153 231 - 318 2e-22 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 2 cut(s) 135, 275
AciI CCGC 2 cut(s) 173, 1029
AclWI GGATC 4 cut(s) 662, 675, 796, 1018
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 3 cut(s) 19, 673, 929
AcuI CTGAAG 2 cut(s) 143, 888
AfaI GTAC 3 cut(s) 168, 783, 803
AfiI CCNNNNNNNGG 4 cut(s) 285, 596, 699, 1022
AgsI TTSAA 4 cut(s) 293, 413, 628, 949
AjiI CACGTC 1 cut(s) 302
AjnI CCWGG 2 cut(s) 469, 878
AluBI AGCT 5 cut(s) 15, 95, 218, 344, 902
AluI AGCT 5 cut(s) 15, 95, 218, 344, 902
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 4 cut(s) 662, 675, 796, 1018
Ama87I CYCGRG 1 cut(s) 975
AoxI GGCC 3 cut(s) 423, 840, 921
ApeKI GCWGC 1 cut(s) 516
ApoI RAATTY 3 cut(s) 19, 673, 929
AspS9I GGNCC 2 cut(s) 567, 840
AsuC2I CCSGG 1 cut(s) 222
AsuNHI GCTAGC 1 cut(s) 986
AvaI CYCGRG 1 cut(s) 975
AvaII GGWCC 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 328
BamHI GGATCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 157, 182
BceAI ACGGC 2 cut(s) 47, 908
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 2 cut(s) 471, 880
BciVI GTATCC 2 cut(s) 40, 554
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 2 cut(s) 710, 987
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 2 cut(s) 40, 554
BisI GCNGC 2 cut(s) 517, 1029
BlsI GCNGC 2 cut(s) 518, 1030
Bme1390I CCNGG 3 cut(s) 222, 471, 880
Bme18I GGWCC 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 975
BmgBI CACGTC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 567, 840
BmiI GGNNCC 2 cut(s) 669, 1027
BmrFI CCNGG 3 cut(s) 222, 471, 880
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 3 cut(s) 114, 136, 808
BmtI GCTAGC 1 cut(s) 990
BmuI ACTGGG 1 cut(s) 507
BpmI CTGGAG 3 cut(s) 123, 267, 360
BpuEI CTTGAG 2 cut(s) 332, 817
BpuMI CCSGG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 753, 878, 924
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 596, 699, 1022
Bse1I ACTGG 5 cut(s) 235, 250, 502, 569, 579
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 2 cut(s) 471, 880
BseDI CCNNGG 3 cut(s) 753, 878, 924
BseGI GGATG 6 cut(s) 127, 507, 589, 763, 823, 864
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 4 cut(s) 285, 596, 699, 1022
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 949
BseNI ACTGG 5 cut(s) 235, 250, 502, 569, 579
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 425, 842, 923
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 975
BsiSI CCGG 2 cut(s) 131, 221
BslFI GGGAC 2 cut(s) 330, 860
BslI CCNNNNNNNGG 4 cut(s) 285, 596, 699, 1022
BsmFI GGGAC 2 cut(s) 330, 860
BsnI GGCC 3 cut(s) 425, 842, 923
BsoBI CYCGRG 1 cut(s) 975
Bsp1286I GDGCHC 2 cut(s) 17, 328
Bsp143I GATC 4 cut(s) 667, 762, 788, 1010
BspACI CCGC 2 cut(s) 173, 1029
BspANI GGCC 3 cut(s) 425, 842, 923
BspCNI CTCAG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 669, 1027
BspMI ACCTGC 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 990
BspPI GGATC 4 cut(s) 662, 675, 796, 1018
BspQI GCTCTTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 5 cut(s) 235, 250, 502, 569, 579
BssECI CCNNGG 3 cut(s) 753, 878, 924
BssMI GATC 4 cut(s) 667, 762, 788, 1010
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 471, 880
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 403
BstC8I GCNNGC 4 cut(s) 36, 404, 514, 988
BstDEI CTNAG 2 cut(s) 542, 935
BstDSI CCRYGG 1 cut(s) 924
BstENI CCTNNNNNAGG 1 cut(s) 1020
BstF5I GGATG 6 cut(s) 127, 507, 589, 763, 823, 864
BstKTI GATC 4 cut(s) 670, 765, 791, 1013
BstMBI GATC 4 cut(s) 667, 762, 788, 1010
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 4 cut(s) 248, 403, 649, 848
BstNI CCWGG 2 cut(s) 471, 880
BstNSI RCATGY 2 cut(s) 38, 406
BstSCI CCNGG 3 cut(s) 220, 469, 878
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 2 cut(s) 485, 754
BstYI RGATCY 1 cut(s) 667
BsuI GTATCC 2 cut(s) 40, 554
BsuRI GGCC 3 cut(s) 425, 842, 923
BtgI CCRYGG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 302
BtsCI GGATG 6 cut(s) 127, 507, 589, 763, 823, 864
BtsIMutI CAGTG 3 cut(s) 228, 572, 1002
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 4 cut(s) 36, 404, 514, 988
CciI TCATGA 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 567, 840
CseI GACGC 1 cut(s) 862
Csp6I GTAC 3 cut(s) 167, 782, 802
CviAII CATG 8 cut(s) 35, 381, 403, 445, 463, 509, 644, 888
CviQI GTAC 3 cut(s) 167, 782, 802
DdeI CTNAG 2 cut(s) 542, 935
DpnI GATC 4 cut(s) 669, 764, 790, 1012
DpnII GATC 4 cut(s) 667, 762, 788, 1010
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 143, 888
Eco88I CYCGRG 1 cut(s) 975
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 1020
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 469, 878
EcoT14I CCWWGG 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 8 cut(s) 38, 384, 406, 448, 466, 512, 647, 891
FaqI GGGAC 2 cut(s) 330, 860
FatI CATG 8 cut(s) 34, 380, 402, 444, 462, 508, 643, 887
FblI GTMKAC 2 cut(s) 135, 275
Fnu4HI GCNGC 2 cut(s) 517, 1029
FokI GGATG 6 cut(s) 114, 514, 596, 770, 830, 871
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 517, 1029
FspBI CTAG 2 cut(s) 710, 987
GluI GCNGC 2 cut(s) 517, 1029
GsuI CTGGAG 3 cut(s) 123, 267, 360
HaeIII GGCC 3 cut(s) 425, 842, 923
HapII CCGG 2 cut(s) 131, 221
HgaI GACGC 1 cut(s) 862
Hin1II CATG 8 cut(s) 38, 384, 406, 448, 466, 512, 647, 891
HincII GTYRAC 2 cut(s) 136, 276
HindII GTYRAC 2 cut(s) 136, 276
HinfI GANTC 3 cut(s) 52, 272, 296
HpaII CCGG 2 cut(s) 131, 221
Hpy166II GTNNAC 3 cut(s) 136, 276, 570
Hpy188I TCNGA 4 cut(s) 46, 162, 866, 938
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 3 cut(s) 136, 276, 570
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 6 cut(s) 70, 110, 523, 614, 839, 947
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 301, 914
HpyCH4V TGCA 6 cut(s) 127, 242, 406, 557, 778, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 403, 649, 848
HpyF3I CTNAG 2 cut(s) 542, 935
HpySE526I ACGT 2 cut(s) 301, 914
Hsp92II CATG 8 cut(s) 38, 384, 406, 448, 466, 512, 647, 891
Kzo9I GATC 4 cut(s) 667, 762, 788, 1010
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 7 cut(s) 92, 104, 223, 248, 341, 532, 1025
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 3 cut(s) 114, 136, 808
MaeI CTAG 2 cut(s) 710, 987
MaeII ACGT 2 cut(s) 301, 914
MaeIII GTNAC 2 cut(s) 226, 488
MalI GATC 4 cut(s) 669, 764, 790, 1012
MbiI CCGCTC 1 cut(s) 173
MboI GATC 4 cut(s) 667, 762, 788, 1010
MboII GAAGA 2 cut(s) 160, 305
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 17, 328
MluCI AATT 4 cut(s) 19, 673, 822, 929
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 328, 795
MnlI CCTC 9 cut(s) 191, 307, 436, 539, 691, 707, 792, 831, 860
Mph1103I ATGCAT 1 cut(s) 129
MseI TTAA 2 cut(s) 194, 684
MspI CCGG 2 cut(s) 131, 221
MspR9I CCNGG 3 cut(s) 222, 471, 880
MvaI CCWGG 2 cut(s) 471, 880
MwoI GCNNNNNNNGC 4 cut(s) 248, 403, 649, 848
NciI CCSGG 1 cut(s) 222
NdeII GATC 4 cut(s) 667, 762, 788, 1010
NheI GCTAGC 1 cut(s) 986
NlaIII CATG 8 cut(s) 38, 384, 406, 448, 466, 512, 647, 891
NlaIV GGNNCC 2 cut(s) 669, 1027
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 2 cut(s) 38, 406
PaeI GCATGC 2 cut(s) 38, 406
PagI TCATGA 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 52, 296
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 2 cut(s) 518, 1030
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 469, 878
PspGI CCWGG 2 cut(s) 469, 878
PspN4I GGNNCC 2 cut(s) 669, 1027
PspPI GGNCC 2 cut(s) 567, 840
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 3 cut(s) 168, 783, 803
RsaNI GTAC 3 cut(s) 167, 782, 802
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 2 cut(s) 134, 274
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 194, 684
SatI GCNGC 2 cut(s) 517, 1029
Sau3AI GATC 4 cut(s) 667, 762, 788, 1010
Sau96I GGNCC 2 cut(s) 567, 840
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 222, 471, 880
SduI GDGCHC 2 cut(s) 17, 328
SfaNI GCATC 3 cut(s) 114, 136, 808
SinI GGWCC 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 311, 796
SmoI CTYRAG 2 cut(s) 311, 796
SphI GCATGC 2 cut(s) 38, 406
Sse9I AATT 4 cut(s) 19, 673, 822, 929
SsiI CCGC 2 cut(s) 173, 1029
SspMI CTAG 2 cut(s) 710, 987
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 220, 469, 878
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 304, 917
TaqI TCGA 6 cut(s) 17, 23, 135, 275, 696, 765
TasI AATT 4 cut(s) 19, 673, 822, 929
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 1031
TfiI GAWTC 2 cut(s) 52, 296
Tru1I TTAA 2 cut(s) 194, 684
Tru9I TTAA 2 cut(s) 194, 684
TscAI CASTG 3 cut(s) 235, 579, 1002
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 5 cut(s) 89, 322, 407, 461, 479
TspGWI ACGGA 1 cut(s) 682
TspRI CASTG 3 cut(s) 235, 579, 1002
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 1020
XapI RAATTY 3 cut(s) 19, 673, 929
XceI RCATGY 2 cut(s) 38, 406
XmiI GTMKAC 2 cut(s) 135, 275
XspI CTAG 2 cut(s) 710, 987
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.