pycom14g18380
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014455
Physical Location & Seq
Forward (+)
20071438 .. 20072491
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGTCGAGTTCTAGCGTTTGGAGCAAAGAAGAAGACAAAGCGTTCGAGAACGCTATTGCCATGCATTGGATCGATGAAAATTCAGAAGAACAGTGGGAAAAGATTGCTGAGTTGGTTCCAAGCAAAAGCATGGAGGAGTTAAAGCAACACTACGAAATGCTAGTCGACGACGTGGGTGCAATCGAGGCGGGGCGAGTGTCCCCGCCTAACTACACAGCTGATGAAGCTGCTAATACAGTATCGTCCAGTAAGGACAGTGGCCATCGTGCTTCTTCTTCCGGAGCTTCGGCTTCTGATAAGAGATTGAATTGCGGTCAAGGAGGTGGGTTTTTGGGTTCAGGTCACGACTCCGCTAGCCATGGCGGTAAGGGAGGATCAAGGGCGGACCAAGAGAGGAAGAAGGGGATACCGTGGACTGAAGAAGAACACAGGCGTGTTATTTCTACTTGGTCTAGACAAGTTTGGGAAAGGAGATTGGAGAAGCATTTCAAGAAACTTTGTCATTTCCAGAACTCCAACACAAGTAGCAAGCCACGCACAAAAATATTTCATCCGTTTGAACTCCATGAACAGAGACGGAGGATCGATCAAGTATCCATGACATTACAAGCGTCAACAACGGAGACGTTTCATCTCACCAGCAGCCGCCAATTACCGGGCAGCAGACCAGTTCGTATGCGCCAACTGCGGCCACCACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.34

Weight (kDa)

8.87

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 53 2.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49010
fragaria_vesca FvH4_5g12670
malus_domestica MD06G1211700.v1.1 MD14G1222200.v1.1
prunus_persica Prupe.5G217700_v2.0.a1
pyrus_communis pycom14g18380
rosa_chinensis RchiOBHm_Chr7g0184661
rosa_laevigata RLG00000004961
rosa_multiflora Rmu_co8449211.1_g000002 Rmu_ssc0000289.1_g000025
rosa_roxburghii Rroxscaffold_3G00269440
rosa_rugosa Rorug06G0464300
rosa_samantha Rh7AG078600 Rh7BG068700 Rh7CG069500 Rh7DG068800
rosa_wichuraiana Rw7G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 8 cut(s) 188, 203, 312, 351, 363, 383, 646, 688
AclWI GGATC 3 cut(s) 77, 382, 590
AcoI YGGCCR 2 cut(s) 259, 689
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 66, 655
AgsI TTSAA 3 cut(s) 307, 490, 560
AjiI CACGTC 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 3 cut(s) 218, 227, 284
AluI AGCT 3 cut(s) 218, 227, 284
Alw26I GTCTC 2 cut(s) 568, 617
AlwI GGATC 3 cut(s) 77, 382, 590
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 259, 689
ApeKI GCWGC 3 cut(s) 227, 642, 660
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 4 cut(s) 26, 58, 147, 179
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 1 cut(s) 628
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 214, 654, 672
BccI CCATC 1 cut(s) 270
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciVI GTATCC 2 cut(s) 399, 604
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 568, 617
BfaI CTAG 4 cut(s) 12, 161, 354, 453
BfuI GTATCC 2 cut(s) 399, 604
BisI GCNGC 5 cut(s) 228, 643, 646, 661, 689
BlsI GCNGC 5 cut(s) 229, 644, 647, 662, 690
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 657
BmtI GCTAGC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 657
Bsa29I ATCGAT 2 cut(s) 72, 585
BsaJI CCNNGG 2 cut(s) 358, 410
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 655
Bse1I ACTGG 2 cut(s) 246, 668
BseAI TCCGGA 1 cut(s) 278
BseCI ATCGAT 2 cut(s) 72, 585
BseDI CCNNGG 2 cut(s) 358, 410
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 2 cut(s) 66, 655
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 246, 668
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 214, 654, 672
BshFI GGCC 2 cut(s) 261, 691
BshVI ATCGAT 2 cut(s) 72, 585
BsiSI CCGG 2 cut(s) 279, 656
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 66, 655
BsmAI GTCTC 2 cut(s) 568, 617
BsmBI CGTCTC 2 cut(s) 568, 617
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 2 cut(s) 261, 691
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 4 cut(s) 69, 374, 582, 586
Bsp19I CCATGG 1 cut(s) 358
BspACI CCGC 8 cut(s) 188, 203, 312, 351, 363, 383, 646, 688
BspANI GGCC 2 cut(s) 261, 691
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 2 cut(s) 72, 585
BspEI TCCGGA 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 3 cut(s) 77, 382, 590
BsrI ACTGG 2 cut(s) 246, 668
BssECI CCNNGG 2 cut(s) 358, 410
BssMI GATC 4 cut(s) 69, 374, 582, 586
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 4 cut(s) 93, 238, 257, 411
BstC8I GCNNGC 2 cut(s) 355, 530
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 358, 410
BstF5I GGATG 1 cut(s) 550
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 4 cut(s) 72, 377, 585, 589
BstMAI GTCTC 2 cut(s) 568, 617
BstMBI GATC 4 cut(s) 69, 374, 582, 586
BstMWI GCNNNNNNNGC 5 cut(s) 21, 185, 224, 534, 685
BstSCI CCNGG 1 cut(s) 655
BstV1I GCAGC 3 cut(s) 214, 654, 672
BstV2I GAAGAC 1 cut(s) 39
Bsu15I ATCGAT 2 cut(s) 72, 585
BsuI GTATCC 2 cut(s) 399, 604
BsuRI GGCC 2 cut(s) 261, 691
BsuTUI ATCGAT 2 cut(s) 72, 585
BtgI CCRYGG 2 cut(s) 358, 410
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 2 cut(s) 98, 262
Cac8I GCNNGC 2 cut(s) 355, 530
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 2 cut(s) 72, 585
CseI GACGC 1 cut(s) 600
CviAII CATG 5 cut(s) 61, 130, 359, 566, 598
CviJI RGCY 9 cut(s) 218, 227, 261, 284, 290, 357, 532, 645, 691
CviKI_1 RGCY 9 cut(s) 218, 227, 261, 284, 290, 357, 532, 645, 691
DdeI CTNAG 1 cut(s) 108
DpnI GATC 4 cut(s) 71, 376, 584, 588
DpnII GATC 4 cut(s) 69, 374, 582, 586
EaeI YGGCCR 2 cut(s) 259, 689
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 358
Esp3I CGTCTC 2 cut(s) 568, 617
FaeI CATG 5 cut(s) 64, 133, 362, 569, 601
FaiI YATR 6 cut(s) 62, 131, 360, 567, 599, 677
FaqI GGGAC 1 cut(s) 184
FatI CATG 5 cut(s) 60, 129, 358, 565, 597
FauI CCCGC 2 cut(s) 181, 210
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 5 cut(s) 228, 643, 646, 661, 689
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 5 cut(s) 228, 643, 646, 661, 689
FspBI CTAG 4 cut(s) 12, 161, 354, 453
GlaI GCGC 1 cut(s) 680
GluI GCNGC 5 cut(s) 228, 643, 646, 661, 689
HaeIII GGCC 2 cut(s) 261, 691
HapII CCGG 2 cut(s) 279, 656
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 681
Hin1II CATG 5 cut(s) 64, 133, 362, 569, 601
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 2 cut(s) 166, 615
HindII GTYRAC 2 cut(s) 166, 615
HinfI GANTC 1 cut(s) 347
HpaII CCGG 2 cut(s) 279, 656
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 3 cut(s) 166, 414, 615
Hpy188I TCNGA 2 cut(s) 85, 295
Hpy188III TCNNGA 6 cut(s) 46, 279, 344, 453, 490, 508
Hpy8I GTNNAC 3 cut(s) 166, 414, 615
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 4 cut(s) 93, 238, 257, 411
HpyCH4IV ACGT 2 cut(s) 171, 626
HpyCH4V TGCA 2 cut(s) 64, 179
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 185, 224, 534, 685
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 171, 626
Hsp92II CATG 5 cut(s) 64, 133, 362, 569, 601
HspAI GCGC 1 cut(s) 679
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 4 cut(s) 69, 374, 582, 586
LmnI GCTCC 2 cut(s) 21, 281
LpnPI CCDG 8 cut(s) 259, 292, 324, 415, 521, 652, 669, 681
Lsp1109I GCAGC 3 cut(s) 214, 654, 672
MaeI CTAG 4 cut(s) 12, 161, 354, 453
MaeII ACGT 2 cut(s) 171, 626
MaeIII GTNAC 1 cut(s) 341
MalI GATC 4 cut(s) 71, 376, 584, 588
MboI GATC 4 cut(s) 69, 374, 582, 586
MboII GAAGA 8 cut(s) 41, 44, 98, 264, 267, 409, 431, 434
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 79, 307, 650
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 6 cut(s) 127, 178, 314, 365, 387, 573
Mox20I TGGCCA 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 66
MroI TCCGGA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 261
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 279, 656
MspR9I CCNGG 1 cut(s) 657
MwoI GCNNNNNNNGC 5 cut(s) 21, 185, 224, 534, 685
NciI CCSGG 1 cut(s) 657
NcoI CCATGG 1 cut(s) 358
NdeII GATC 4 cut(s) 69, 374, 582, 586
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 5 cut(s) 64, 133, 362, 569, 601
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 66
OliI CACNNNNGTG 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 5 cut(s) 229, 644, 647, 662, 690
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 432
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 5 cut(s) 228, 643, 646, 661, 689
Sau3AI GATC 4 cut(s) 69, 374, 582, 586
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 657
SetI ASST 7 cut(s) 174, 220, 229, 286, 325, 343, 629
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 3 cut(s) 79, 307, 650
SsiI CCGC 8 cut(s) 188, 203, 312, 351, 363, 383, 646, 688
SspI AATATT 1 cut(s) 546
SspMI CTAG 4 cut(s) 12, 161, 354, 453
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 4 cut(s) 93, 238, 257, 411
TaiI ACGT 2 cut(s) 174, 629
TaqI TCGA 6 cut(s) 5, 45, 72, 165, 183, 585
TasI AATT 3 cut(s) 79, 307, 650
TauI GCSGC 2 cut(s) 648, 691
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 98, 262
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 227, 642, 660
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 90, 237, 539, 582, 620
TspGWI ACGGA 3 cut(s) 543, 592, 635
TspRI CASTG 2 cut(s) 98, 262
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 4 cut(s) 12, 161, 354, 453
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.