pycom14g18410

pre-rRNA-processing protein TSR1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010916
Physical Location & Seq
Forward (+)
20084512 .. 20087090
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGATTTATGAAGCCCGAAATTTCATAAAGATAGTACCGCCTCTCTGCTTCTCTCCCTCCCTTCTTCTCCACCATTCCCTCTCTTTTGGCGGCACGGCACTGAGTGATCGACTGCGGCGGCGAGTAACGTTTCCCCGCGTCGTGATGGGAGGCTCGCGAGCTCAAGTGAATAAGCAGCACAAGACGCGCTTCGCCTCCAAATCTTCTCGCAATCTCCACAAAACTTCAGAGAAGAGGAGGATCGGTAAACCGGAGCGCAATGTCACTAAGGGAGCTCGAGCTGCTCGCGTTCAGCGGAGCAAGATGGTTTTGTTCGGACTTTCTGCTGATGTGAACCTAAATTCCCTTGCTGGGGATCTTTTATCGTTGCTATCTCCACAAGGTTATGAAGCCGCATTTCCAACGGTTGCTTCTCCCGAGTACAAGCTCAGAACAACGGTATTGAAGGCACCTCATGGCGATCTTCCAACATGTATGGAAATGGCTAAGGTTGCTGATCTCATTGCTTTTGTGGCATCAGCGAGCTCTTTACGTGAAGGAAGCACGTCTGACTACATTGACTCCTTTGGAAGTCAATGTCTTTCTGTTTTTAGGTCCCTTGGTTTACCAAGCACTGTGGTGCTAATTCGTGATCTACCTGCTGATGTGAAAAGAAGACATGATTCTAAGAAAATATGTATGTCTAGTCTTGCTTCTGAATTTCCCGAGGATTGTAAATATTATCCAGCTGATACAAAGGATGATTTGCACAAGTTCATGTGGCTCTTTAAGGAACAAAGGCTTTCAATTCCTCACTGGCGAAGTCAACGGCCTTACCTGATGGCCCAGAAGGTTGATATGGTAGCAGATGATTCCAGTTTGGGAAAGTGCACCCTTCTTCTTACTGGATATATACGTGCTCGCAGTCTTTCTGTGAACCAACTGGTTCATGTTTCCGGCGCGGGGGATTTCCAGCTGTCCAAAATGGAAATTCTCAAGATCGATCCATTTCCTTTGAATGCAAGAAAAGAGCAAGATGCCATGGACTCAGATGAAGTGGGTGATAGAGAGTTGATGTCCTTCGTTCTTTGGTTCCTGATCCGATGA

Protein Analysis

362

Amino Acids

40.5

Weight (kDa)

9.66

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 264 - 326 2.5e-21 AARP2CN (NUC121) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42440
fragaria_vesca FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica Prupe.5G218100_v2.0.a1
pyrus_communis pycom14g18410 pycom14g18420
rosa_chinensis RchiOBHm_Chr7g0184701
rosa_laevigata RLG00000004958
rosa_multiflora Rmu_ssc0000289.1_g000022
rosa_roxburghii Rroxscaffold_3G00269420
rosa_rugosa Rorug06G0464600 Rorug06G0464600
rosa_samantha Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana Rw7G005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 448
AccII CGCG 5 cut(s) 138, 157, 187, 288, 941
AciI CCGC 8 cut(s) 38, 90, 115, 118, 136, 295, 393, 941
AclI AACGTT 1 cut(s) 128
AclWI GGATC 4 cut(s) 248, 363, 977, 1072
AcsI RAATTY 4 cut(s) 19, 340, 698, 969
AcuI CTGAAG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 36, 422
AfiI CCNNNNNNNGG 3 cut(s) 351, 352, 942
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 3 cut(s) 445, 786, 997
AjiI CACGTC 1 cut(s) 546
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AleI CACNNNNGTG 1 cut(s) 617
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 7 cut(s) 161, 275, 281, 427, 525, 728, 955
AluI AGCT 7 cut(s) 161, 275, 281, 427, 525, 728, 955
Alw21I GWGCWC 5 cut(s) 163, 277, 527, 872, 901
Alw44I GTGCAC 1 cut(s) 868
AlwI GGATC 4 cut(s) 248, 363, 977, 1072
Ama87I CYCGRG 3 cut(s) 276, 416, 704
AoxI GGCC 2 cut(s) 809, 822
ApaLI GTGCAC 1 cut(s) 868
ApeKI GCWGC 2 cut(s) 175, 281
ApoI RAATTY 4 cut(s) 19, 340, 698, 969
AspLEI GCGC 3 cut(s) 189, 258, 941
AspS9I GGNCC 2 cut(s) 594, 823
AsuHPI GGTGA 1 cut(s) 1052
AvaI CYCGRG 3 cut(s) 276, 416, 704
AvaII GGWCC 1 cut(s) 594
BaeGI GKGCMC 1 cut(s) 872
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 3 cut(s) 163, 277, 527
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 5 cut(s) 163, 277, 527, 872, 901
BbvI GCAGC 2 cut(s) 187, 268
BccI CCATC 3 cut(s) 139, 298, 814
BceAI ACGGC 2 cut(s) 111, 824
BfaI CTAG 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 6 cut(s) 91, 116, 119, 176, 282, 393
BlsI GCNGC 6 cut(s) 92, 117, 120, 177, 283, 394
Bme18I GGWCC 1 cut(s) 594
BmeT110I CYCGRG 3 cut(s) 276, 416, 704
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 594, 823
BmiI GGNNCC 3 cut(s) 450, 596, 1073
BmsI GCATC 2 cut(s) 524, 1006
BpiI GAAGAC 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 486
BpuEI CTTGAG 2 cut(s) 147, 959
Bsa29I ATCGAT 1 cut(s) 981
BsaAI YACGTR 2 cut(s) 533, 896
BsaJI CCNNGG 3 cut(s) 598, 705, 1020
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 545, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 352, 942
Bse1I ACTGG 4 cut(s) 800, 855, 889, 927
Bse3DI GCAATG 2 cut(s) 265, 501
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 598, 705, 1020
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 3 cut(s) 351, 352, 942
BseMI GCAATG 2 cut(s) 265, 501
BseMII CTCAG 3 cut(s) 92, 442, 1041
BseNI ACTGG 4 cut(s) 800, 855, 889, 927
BseRI GAGGAG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 2 cut(s) 187, 268
BseYI CCCAGC 1 cut(s) 350
Bsh1236I CGCG 5 cut(s) 138, 157, 187, 288, 941
BshFI GGCC 2 cut(s) 811, 824
BshNI GGYRCC 1 cut(s) 448
BshVI ATCGAT 1 cut(s) 981
BsiHKAI GWGCWC 5 cut(s) 163, 277, 527, 872, 901
BsiHKCI CYCGRG 3 cut(s) 276, 416, 704
BsiSI CCGG 2 cut(s) 251, 936
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 3 cut(s) 351, 352, 942
BsmFI GGGAC 1 cut(s) 580
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 2 cut(s) 811, 824
BsoBI CYCGRG 3 cut(s) 276, 416, 704
Bsp1286I GDGCHC 5 cut(s) 163, 277, 527, 872, 901
Bsp143I GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
Bsp19I CCATGG 1 cut(s) 1020
Bsp68I TCGCGA 1 cut(s) 157
BspACI CCGC 8 cut(s) 38, 90, 115, 118, 136, 295, 393, 941
BspANI GGCC 2 cut(s) 811, 824
BspCNI CTCAG 3 cut(s) 93, 441, 1040
BspDI ATCGAT 1 cut(s) 981
BspFNI CGCG 5 cut(s) 138, 157, 187, 288, 941
BspLI GGNNCC 3 cut(s) 450, 596, 1073
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 4 cut(s) 248, 363, 977, 1072
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 2 cut(s) 265, 501
BsrI ACTGG 4 cut(s) 800, 855, 889, 927
BssECI CCNNGG 3 cut(s) 598, 705, 1020
BssMI GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
BssT1I CCWWGG 2 cut(s) 598, 1020
Bst4CI ACNGT 3 cut(s) 406, 439, 616
Bst6I CTCTTC 1 cut(s) 227
BstBAI YACGTR 2 cut(s) 533, 896
BstC8I GCNNGC 5 cut(s) 155, 159, 286, 523, 901
BstDEI CTNAG 6 cut(s) 101, 267, 428, 486, 666, 1027
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 5 cut(s) 138, 157, 187, 288, 941
BstHHI GCGC 3 cut(s) 189, 258, 941
BstKTI GATC 9 cut(s) 109, 243, 358, 463, 499, 634, 981, 985, 1080
BstMBI GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
BstMWI GCNNNNNNNGC 4 cut(s) 184, 281, 491, 512
BstNSI RCATGY 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 872
BstUI CGCG 5 cut(s) 138, 157, 187, 288, 941
BstV1I GCAGC 2 cut(s) 187, 268
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 2 cut(s) 811, 824
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 1 cut(s) 1020
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 98, 612, 793
BtuMI TCGCGA 1 cut(s) 157
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 5 cut(s) 155, 159, 286, 523, 901
CfoI GCGC 3 cut(s) 189, 258, 941
Cfr13I GGNCC 2 cut(s) 594, 823
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 2 cut(s) 127, 193
Csp6I GTAC 2 cut(s) 35, 421
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 6 cut(s) 455, 471, 659, 757, 929, 1021
CviQI GTAC 2 cut(s) 35, 421
DdeI CTNAG 6 cut(s) 101, 267, 428, 486, 666, 1027
DpnI GATC 9 cut(s) 108, 242, 357, 462, 498, 633, 980, 984, 1079
DpnII GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 3 cut(s) 161, 275, 525
Eco130I CCWWGG 2 cut(s) 598, 1020
Eco24I GRGCYC 3 cut(s) 163, 277, 527
Eco47I GGWCC 1 cut(s) 594
Eco53kI GAGCTC 3 cut(s) 161, 275, 525
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 3 cut(s) 276, 416, 704
EcoICRI GAGCTC 3 cut(s) 161, 275, 525
EcoO109I RGGNCCY 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 598, 1020
EcoT38I GRGCYC 3 cut(s) 163, 277, 527
ErhI CCWWGG 2 cut(s) 598, 1020
FaeI CATG 6 cut(s) 458, 474, 662, 760, 932, 1024
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 580
FatI CATG 6 cut(s) 454, 470, 658, 756, 928, 1020
FauI CCCGC 2 cut(s) 143, 934
Fnu4HI GCNGC 6 cut(s) 91, 116, 119, 176, 282, 393
FokI GGATG 1 cut(s) 752
FriOI GRGCYC 3 cut(s) 163, 277, 527
Fsp4HI GCNGC 6 cut(s) 91, 116, 119, 176, 282, 393
FspBI CTAG 1 cut(s) 684
GlaI GCGC 3 cut(s) 188, 257, 940
GluI GCNGC 6 cut(s) 91, 116, 119, 176, 282, 393
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 2 cut(s) 811, 824
HapII CCGG 2 cut(s) 251, 936
HgaI GACGC 2 cut(s) 127, 193
HhaI GCGC 3 cut(s) 189, 258, 941
Hin1II CATG 6 cut(s) 458, 474, 662, 760, 932, 1024
Hin6I GCGC 3 cut(s) 187, 256, 939
HinP1I GCGC 3 cut(s) 187, 256, 939
HincII GTYRAC 1 cut(s) 806
HindII GTYRAC 1 cut(s) 806
HinfI GANTC 4 cut(s) 560, 662, 851, 1025
HpaII CCGG 2 cut(s) 251, 936
HphI GGTGA 1 cut(s) 1052
Hpy166II GTNNAC 6 cut(s) 248, 334, 605, 806, 870, 916
Hpy188I TCNGA 7 cut(s) 229, 317, 431, 550, 697, 1030, 1082
Hpy188III TCNNGA 7 cut(s) 142, 156, 416, 629, 704, 976, 1075
Hpy8I GTNNAC 6 cut(s) 248, 334, 605, 806, 870, 916
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 6 cut(s) 71, 439, 530, 823, 884, 1069
HpyCH4III ACNGT 3 cut(s) 406, 439, 616
HpyCH4IV ACGT 4 cut(s) 128, 532, 545, 895
HpyCH4V TGCA 3 cut(s) 748, 870, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 281, 491, 512
HpyF3I CTNAG 6 cut(s) 101, 267, 428, 486, 666, 1027
HpySE526I ACGT 4 cut(s) 128, 532, 545, 895
Hsp92II CATG 6 cut(s) 458, 474, 662, 760, 932, 1024
HspAI GCGC 3 cut(s) 187, 256, 939
Kzo9I GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
LmnI GCTCC 3 cut(s) 253, 272, 297
Lsp1109I GCAGC 2 cut(s) 187, 268
LweI GCATC 2 cut(s) 524, 1006
MaeI CTAG 1 cut(s) 684
MaeII ACGT 4 cut(s) 128, 532, 545, 895
MaeIII GTNAC 2 cut(s) 124, 262
MalI GATC 9 cut(s) 108, 242, 357, 462, 498, 633, 980, 984, 1079
MboI GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
MboII GAAGA 6 cut(s) 56, 195, 244, 455, 666, 869
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 5 cut(s) 163, 277, 527, 872, 901
MluCI AATT 6 cut(s) 19, 340, 624, 698, 786, 969
MlyI GAGTC 2 cut(s) 554, 1019
MmeI TCCRAC 2 cut(s) 425, 491
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 3 cut(s) 295, 728, 955
MspI CCGG 2 cut(s) 251, 936
Mva1269I GAATGC 1 cut(s) 1003
MvnI CGCG 5 cut(s) 138, 157, 187, 288, 941
MwoI GCNNNNNNNGC 4 cut(s) 184, 281, 491, 512
NcoI CCATGG 1 cut(s) 1020
NdeII GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
NlaIII CATG 6 cut(s) 458, 474, 662, 760, 932, 1024
NlaIV GGNNCC 3 cut(s) 450, 596, 1073
NmuCI GTSAC 1 cut(s) 262
NruI TCGCGA 1 cut(s) 157
NspI RCATGY 1 cut(s) 474
OliI CACNNNNGTG 1 cut(s) 617
PaeR7I CTCGAG 1 cut(s) 276
PciI ACATGT 1 cut(s) 470
PctI GAATGC 1 cut(s) 1003
PfeI GAWTC 2 cut(s) 662, 851
PkrI GCNGC 6 cut(s) 92, 117, 120, 177, 283, 394
PleI GAGTC 2 cut(s) 554, 1019
PpsI GAGTC 2 cut(s) 554, 1019
Ppu21I YACGTR 2 cut(s) 533, 896
PpuMI RGGWCCY 1 cut(s) 594
PscI ACATGT 1 cut(s) 470
Psp124BI GAGCTC 3 cut(s) 163, 277, 527
Psp1406I AACGTT 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 3 cut(s) 450, 596, 1073
PspPI GGNCC 2 cut(s) 594, 823
PspPPI RGGWCCY 1 cut(s) 594
PspXI VCTCGAGB 1 cut(s) 276
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 2 cut(s) 728, 955
RruI TCGCGA 1 cut(s) 157
RsaI GTAC 2 cut(s) 36, 422
RsaNI GTAC 2 cut(s) 35, 421
RseI CAYNNNNRTG 1 cut(s) 617
SacI GAGCTC 3 cut(s) 163, 277, 527
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 6 cut(s) 91, 116, 119, 176, 282, 393
Sau3AI GATC 9 cut(s) 106, 240, 355, 460, 496, 631, 978, 982, 1077
Sau96I GGNCC 2 cut(s) 594, 823
SchI GAGTC 2 cut(s) 554, 1019
SduI GDGCHC 5 cut(s) 163, 277, 527, 872, 901
SfaNI GCATC 2 cut(s) 524, 1006
Sfr274I CTCGAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 162, 276, 974
SmoI CTYRAG 3 cut(s) 162, 276, 974
Sse9I AATT 6 cut(s) 19, 340, 624, 698, 786, 969
SsiI CCGC 8 cut(s) 38, 90, 115, 118, 136, 295, 393, 941
SspI AATATT 1 cut(s) 719
SspMI CTAG 1 cut(s) 684
SstI GAGCTC 3 cut(s) 163, 277, 527
StyI CCWWGG 2 cut(s) 598, 1020
TaaI ACNGT 3 cut(s) 406, 439, 616
TaiI ACGT 4 cut(s) 131, 535, 548, 898
TaqI TCGA 3 cut(s) 109, 277, 981
TasI AATT 6 cut(s) 19, 340, 624, 698, 786, 969
TatI WGTACW 1 cut(s) 420
TauI GCSGC 4 cut(s) 93, 118, 121, 395
TfiI GAWTC 2 cut(s) 662, 851
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 3 cut(s) 105, 619, 800
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 175, 281
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 6 cut(s) 13, 24, 402, 745, 917, 1047
TspRI CASTG 3 cut(s) 105, 619, 800
VneI GTGCAC 1 cut(s) 868
VpaK11BI GGWCC 1 cut(s) 594
XapI RAATTY 4 cut(s) 19, 340, 698, 969
XceI RCATGY 1 cut(s) 474
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.