Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007165

Physical Location & Seq

Genomic Coordinates Forward (+)

20452922 .. 20455522

Gene Structure 2601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGGTCGTCGTCTTCTTCCGATAGAATTAACATTGCTGCGAGTGCTCAGAGACTCGATGTCGACAATCGGATTCCTCTGCGTATTTACTTTCGGATCGCAAACAATGTCCTTAAGCAGGCTGACATATTTCGACACGAGAAGAATATTATAGACCTATACATTATGCTACTAAGGTTTTCAAGTTTGGTCTCTGAGACAATACCGTGTCATCGGGACTATAGAGTATCTGTTCAAGCAGAGAAGGTTTTCTTGAAAAAGAAATTGTTTGATGCTCTAAATGAGCTCGAGGAGCTCAAGCCAGCAGTGAAACAGAAGCTTAAGCCAACAGTGAAACAGAAGAGCGATGAGTTTAACGGAATAAATGGAAAGTTGAACAATGGGTGGAGCCATAATCACCAAATTGGTTTTGTGGCATCCCCTCTCAAGAAGCAATCTTTGATTAGTTATGATGCAACCAAGGCAGCAGGACCAGCTGCAAGAGAACTTGTCCATCAACCTCTAAGGTCTCAACAATTTTCCTATGCCAGGCCTTTGGAGCATCAATTTCGCAAACTCCATAGTTCCACGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

193

Amino Acids

22.03

Weight (kDa)

10.03

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	12 - 106	3.9e-13	USP8 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48790
fragaria_vesca	FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880
malus_domestica	MD06G1217700.v1.1 MD14G1227900.v1.1
prunus_persica	Prupe.5G222900_v2.0.a1
pyrus_communis	pycom06g19390 pycom14g18930
rosa_chinensis	RchiOBHm_Chr7g0185701
rosa_laevigata	RLG00000004893
rosa_multiflora	Rmu_sc0004909.1_g000002 Rmu_sc0008747.1_g000004 Rmu_sc0023648.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268720
rosa_rugosa	Rorug06G0470600 Rorug06G0470700
rosa_samantha	Rh7AG071800 Rh7BG076100 Rh7CG076100 Rh7DG076100
rosa_wichuraiana	Rw7G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	118, 528
AflII	CTTAAG	2 cut(s)	113, 320
AgsI	TTSAA	4 cut(s)	183, 236, 256, 376
AhdI	GACNNNNNGTC	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	286, 295, 319, 476
AluI	AGCT	4 cut(s)	286, 295, 319, 476
Alw21I	GWGCWC	3 cut(s)	49, 288, 297
Alw26I	GTCTC	4 cut(s)	46, 191, 196, 513
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	38, 464, 476
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	288, 297
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	3 cut(s)	49, 288, 297
BbvI	GCAGC	3 cut(s)	25, 463, 476
BccI	CCATC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	529
BcoDI	GTCTC	4 cut(s)	46, 191, 196, 513
BfmI	CTRYAG	1 cut(s)	220
BfrI	CTTAAG	2 cut(s)	113, 320
BisI	GCNGC	3 cut(s)	39, 465, 477
BlsI	GCNGC	3 cut(s)	40, 466, 478
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	1 cut(s)	470
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	529
BmsI	GCATC	4 cut(s)	262, 425, 442, 550
BpiI	GAAGAC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	281, 410
BsaI	GGTCTC	2 cut(s)	196, 513
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 528
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	118, 528
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	62, 186
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	25, 463, 476
BshFI	GGCC	1 cut(s)	532
BsiHKAI	GWGCWC	3 cut(s)	49, 288, 297
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	118, 528
BsmAI	GTCTC	4 cut(s)	46, 191, 196, 513
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	532
Bso31I	GGTCTC	2 cut(s)	196, 513
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	49, 288, 297
Bsp143I	GATC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	2 cut(s)	61, 187
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	335
BspTI	CTTAAG	2 cut(s)	113, 320
BspTNI	GGTCTC	2 cut(s)	196, 513
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	207, 331
Bst6I	CTCTTC	1 cut(s)	335
BstAFI	CTTAAG	2 cut(s)	113, 320
BstC8I	GCNNGC	2 cut(s)	120, 303
BstDEI	CTNAG	4 cut(s)	48, 173, 195, 503
BstENI	CCTNNNNNAGG	2 cut(s)	116, 526
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	4 cut(s)	46, 191, 196, 513
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 292, 461, 473, 538
BstNI	CCWGG	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	25, 463, 476
BstV2I	GAAGAC	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	312, 336
Cac8I	GCNNGC	2 cut(s)	120, 303
Cfr13I	GGNCC	1 cut(s)	470
CviJI	RGCY	9 cut(s)	122, 286, 295, 301, 319, 325, 390, 476, 532
CviKI_1	RGCY	9 cut(s)	122, 286, 295, 301, 319, 325, 390, 476, 532
DdeI	CTNAG	4 cut(s)	48, 173, 195, 503
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	2 cut(s)	286, 295
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	532
Eco24I	GRGCYC	2 cut(s)	288, 297
Eco31I	GGTCTC	2 cut(s)	196, 513
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	2 cut(s)	286, 295
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	2 cut(s)	286, 295
EcoNI	CCTNNNNNAGG	2 cut(s)	116, 526
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	2 cut(s)	288, 297
ErhI	CCWWGG	1 cut(s)	459
FaiI	YATR	9 cut(s)	128, 152, 160, 167, 222, 393, 450, 525, 561
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	39, 465, 477
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	2 cut(s)	288, 297
Fsp4HI	GCNGC	3 cut(s)	39, 465, 477
GluI	GCNGC	3 cut(s)	39, 465, 477
HaeIII	GGCC	1 cut(s)	532
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	54, 73
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	5 cut(s)	22, 51, 72, 96, 196
Hpy188III	TCNNGA	3 cut(s)	215, 253, 427
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	207, 331
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	2 cut(s)	455, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 292, 461, 473, 538
HpyF3I	CTNAG	4 cut(s)	48, 173, 195, 503
HpySE526I	ACGT	1 cut(s)	569
Kzo9I	GATC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	3 cut(s)	292, 387, 538
LpnPI	CCDG	6 cut(s)	104, 315, 453, 486, 514, 541
Lsp1109I	GCAGC	3 cut(s)	25, 463, 476
LweI	GCATC	4 cut(s)	262, 425, 442, 550
MaeII	ACGT	1 cut(s)	569
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	4 cut(s)	6, 9, 154, 352
MhlI	GDGCHC	3 cut(s)	49, 288, 297
MluCI	AATT	5 cut(s)	27, 263, 402, 515, 545
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	87, 283, 432, 510
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	4 cut(s)	30, 114, 321, 354
MspA1I	CMGCKG	1 cut(s)	476
MspCI	CTTAAG	2 cut(s)	113, 320
MspR9I	CCNGG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	5 cut(s)	44, 292, 461, 473, 538
NdeII	GATC	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	40, 466, 478
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp124BI	GAGCTC	2 cut(s)	288, 297
Psp6I	CCWGG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	470
PspXI	VCTCGAGB	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	476
SacI	GAGCTC	2 cut(s)	288, 297
SalI	GTCGAC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	30, 114, 321, 354
SatI	GCNGC	3 cut(s)	39, 465, 477
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	529
SduI	GDGCHC	3 cut(s)	49, 288, 297
SfaNI	GCATC	4 cut(s)	262, 425, 442, 550
SfcI	CTRYAG	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	5 cut(s)	113, 287, 296, 320, 425
SmoI	CTYRAG	5 cut(s)	113, 287, 296, 320, 425
Sse9I	AATT	5 cut(s)	27, 263, 402, 515, 545
SseBI	AGGCCT	1 cut(s)	532
SspI	AATATT	1 cut(s)	148
SstI	GAGCTC	2 cut(s)	288, 297
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	207, 331
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	4 cut(s)	57, 63, 133, 288
TasI	AATT	5 cut(s)	27, 263, 402, 515, 545
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	4 cut(s)	30, 114, 321, 354
Tru9I	TTAA	4 cut(s)	30, 114, 321, 354
TscAI	CASTG	2 cut(s)	312, 336
TseI	GCWGC	3 cut(s)	38, 464, 476
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	312, 336
Vha464I	CTTAAG	2 cut(s)	113, 320
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	2 cut(s)	116, 526
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.