pycom14g19640

Ras-related protein RABA6a-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
20895809 .. 20897925
2117 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGTTGATGGGTGATTCGATCGATGAAGAGTGTGATTACTTGTTTAAGGCAGTTTTGATCGGAGACTCCGGAGTTGGCAAATCAAATTTGCTGTCCAGGTTTTCCAAAGACGAATTCCGGTTGGATTCCAAGCCCACCATCGGTGTTGAATTCGCTTATCGGAATATCAAGGTTGCTGATAAACTTGTCAAGGCTCAAATTTGGGACACTGCCGGTCAAGAAAGATTTAGAGCAATCACGAGCTCATACTACCGTGGGGCGCTCGGCGCCATTCTAGTGTACGACATTTCCGCGAGACAATCCTTCGAAAACGTGAGAAACTGGCTGCAGGAGCTTCGCGGATTTGGCAACTCCGACATGGTCATCGTCCTCGTCGGAAACAAGTCGGACTTGAGCCAATCTCGAGAGGTCGATGAGGAAGAAGGCAAAAGTTTAGCAGAGGCAGAAGGCTTGTGCTTCATGGAAACTTCTGCGTTAGAGAATGTGAACGTGGAGCAAGTGTTTTTGGATATGGTTTATAAGATTCATGAAATTACTAGGCAAAAGATTTTGGAAGCAAAAGTGGAAGAAACGAGTGCCGCGAGTAGAAGTCTTGGTGGTGCGACAGAAACCATCCATATTGGTGATGATCTTGAAGTTACGGCTACTAAAAAATCTACTTATTGTTGCTCAAATTAG
Functional Annotation

Protein Analysis

226

Amino Acids

25.05

Weight (kDa)

4.8

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 141 2.6e-14 ADP-ribosylation factor family
Ras PF00071 16 - 176 1.4e-61 Ras family
Roc PF08477 16 - 130 6.9e-34 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 17 - 123 8.1e-06 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011926)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 3 cut(s) 293, 339, 581
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 3 cut(s) 291, 339, 579
AcsI RAATTY 4 cut(s) 85, 113, 149, 198
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 149, 635
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 243, 334
AluI AGCT 2 cut(s) 243, 334
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 57, 289
Ama87I CYCGRG 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 4 cut(s) 85, 113, 149, 198
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 2 cut(s) 262, 269
AsuHPI GGTGA 2 cut(s) 23, 635
AsuII TTCGAA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 402
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 146, 620
BceAI ACGGC 1 cut(s) 657
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 57, 289
BfaI CTAG 2 cut(s) 275, 537
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 2 cut(s) 263, 270
BisI GCNGC 2 cut(s) 326, 579
BlsI GCNGC 2 cut(s) 327, 580
Bme1390I CCNGG 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 385, 417
Bpu14I TTCGAA 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 412
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 2 cut(s) 68, 117
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 3 cut(s) 293, 339, 581
Bsh1285I CGRYCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 3 cut(s) 69, 118, 213
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 57, 289
BsmFI GGGAC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 3 cut(s) 18, 57, 628
BspACI CCGC 3 cut(s) 291, 339, 579
BspDI ATCGAT 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 3 cut(s) 293, 339, 581
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 18, 57, 628
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 3 cut(s) 293, 339, 581
BstH2I RGCGCY 2 cut(s) 263, 270
BstHHI GCGC 2 cut(s) 262, 269
BstKTI GATC 3 cut(s) 21, 60, 631
BstMAI GTCTC 2 cut(s) 57, 289
BstMBI GATC 3 cut(s) 18, 57, 628
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 266, 331, 345
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 326
BstUI CGCG 3 cut(s) 293, 339, 581
BstV1I GCAGC 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 526
CfoI GCGC 2 cut(s) 262, 269
Cfr10I RCCGGY 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 358, 460, 527
CviJI RGCY 8 cut(s) 133, 194, 243, 325, 334, 396, 450, 644
CviKI_1 RGCY 8 cut(s) 133, 194, 243, 325, 334, 396, 450, 644
CviQI GTAC 1 cut(s) 280
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 20, 59, 630
DpnII GATC 3 cut(s) 18, 57, 628
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 243
EcoRI GAATTC 2 cut(s) 113, 149
EcoRII CCWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 3 cut(s) 361, 463, 530
FaiI YATR 7 cut(s) 247, 359, 461, 512, 519, 528, 618
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 357, 459, 526
Fnu4HI GCNGC 2 cut(s) 326, 579
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 326, 579
FspBI CTAG 2 cut(s) 275, 537
GlaI GCGC 2 cut(s) 261, 268
GluI GCNGC 2 cut(s) 326, 579
HaeII RGCGCY 2 cut(s) 263, 270
HapII CCGG 3 cut(s) 69, 118, 213
HhaI GCGC 2 cut(s) 262, 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 361, 463, 530
Hin6I GCGC 2 cut(s) 260, 267
HinP1I GCGC 2 cut(s) 260, 267
HinfI GANTC 4 cut(s) 14, 65, 125, 523
HpaII CCGG 3 cut(s) 69, 118, 213
HphI GGTGA 2 cut(s) 23, 635
Hpy166II GTNNAC 2 cut(s) 280, 487
Hpy188I TCNGA 5 cut(s) 62, 162, 355, 377, 388
Hpy188III TCNNGA 7 cut(s) 69, 218, 238, 402, 404, 527, 632
Hpy8I GTNNAC 2 cut(s) 280, 487
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 313, 416, 440
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 312, 489
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 331, 345
HpySE526I ACGT 2 cut(s) 312, 489
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 361, 463, 530
HspAI GCGC 2 cut(s) 260, 267
KasI GGCGCC 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 3 cut(s) 18, 57, 628
LmnI GCTCC 2 cut(s) 331, 493
LpnPI CCDG 7 cut(s) 82, 82, 109, 131, 226, 307, 314
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 2 cut(s) 275, 537
MaeII ACGT 2 cut(s) 312, 489
MaeIII GTNAC 1 cut(s) 637
MalI GATC 3 cut(s) 20, 59, 630
MboI GATC 3 cut(s) 18, 57, 628
MboII GAAGA 3 cut(s) 38, 431, 578
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 6 cut(s) 85, 113, 149, 198, 531, 673
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 4 cut(s) 102, 355, 366, 378
MnlI CCTC 4 cut(s) 380, 400, 409, 433
MroI TCCGGA 1 cut(s) 68
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 275, 621
MspI CCGG 3 cut(s) 69, 118, 213
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 3 cut(s) 293, 339, 581
MwoI GCNNNNNNNGC 3 cut(s) 266, 331, 345
NarI GGCGCC 1 cut(s) 267
NdeII GATC 3 cut(s) 18, 57, 628
NlaIII CATG 3 cut(s) 361, 463, 530
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 243
NspV TTCGAA 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PfeI GAWTC 3 cut(s) 14, 125, 523
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 327, 580
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 59
PsiI TTATAA 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 330
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 275, 621
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 326, 579
Sau3AI GATC 3 cut(s) 18, 57, 628
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 245
SetI ASST 7 cut(s) 101, 174, 245, 315, 336, 411, 492
SfcI CTRYAG 1 cut(s) 326
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 275, 621
SmlI CTYRAG 2 cut(s) 391, 402
SmoI CTYRAG 2 cut(s) 391, 402
Sse9I AATT 6 cut(s) 85, 113, 149, 198, 531, 673
SsiI CCGC 3 cut(s) 291, 339, 579
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 2 cut(s) 275, 537
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 315, 492
TaqI TCGA 5 cut(s) 17, 21, 306, 403, 411
TasI AATT 6 cut(s) 85, 113, 149, 198, 531, 673
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 3 cut(s) 14, 125, 523
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 4 cut(s) 39, 448, 515, 543
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 4 cut(s) 85, 113, 149, 198
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 2 cut(s) 275, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.