pycom14g19820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012333
Physical Location & Seq
Forward (+)
21048150 .. 21048837
688 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGCTAGATCCGAGAAATGATATGCTGCCGCCGCCCTCCTCCCCCACCAACTCCTCTGTCTCCTCCTCCGATCTCGACACCGAGTCTACAGGCTCCTTCTTTCACGATCGGAGCACAACGTTAGGAACACTAATGGGAGTGAGCTTTCCCGCCATCACCTTCAGAGCTCCGAGCCAGCACCTCCGCGACCCCCAACCCGGAAACATCAACAACATCGGTAGTACTAGCGGAAGCAGCTCCGGGAAGACGAAGAAGCCGAAAAAGAAGAGCGCCGCCGCTTCGTCGGCGGTGGGTATGGTGGCGGGGCGGCGGAGGAGGTGGTGGCGCCTCTGCCAAGACGACGGCACCAAGCCGGCTTCGCTTGGGGAGTTTCTTGAGGTGGAGAGGAGGTTCGGAGACGCTGCGTTTTACGATACGGCCGCGGAGCTGGAAGGCGTCATGGTGAGCCAGCCCAGAAATGGACGGCTGTTGTTCGCCGACGGGAGGGTTCTTCCGCCGTCGAATGTTGATGATGGGATTGGTACTTCATCGACGGCTGGGGTTCTCTCTAGATTGCCGGTTTCACTCACTGCCATCTGTAGTGGCGGTGTAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

20.84

Weight (kDa)

9.09

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 324, 344
AccI GTMKAC 1 cut(s) 86
AccII CGCG 2 cut(s) 186, 422
AclI AACGTT 1 cut(s) 119
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 2 cut(s) 325, 435
AfaI GTAC 2 cut(s) 223, 523
AfiI CCNNNNNNNGG 3 cut(s) 197, 458, 483
AhdI GACNNNNNGTC 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 4 cut(s) 144, 167, 237, 427
AluI AGCT 4 cut(s) 144, 167, 237, 427
Alw21I GWGCWC 2 cut(s) 116, 169
Alw26I GTCTC 2 cut(s) 64, 390
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 25, 234, 401
AspLEI GCGC 2 cut(s) 272, 327
AsuC2I CCSGG 2 cut(s) 198, 241
AsuHPI GGTGA 2 cut(s) 148, 454
BanI GGYRCC 2 cut(s) 324, 344
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 116, 169
BbvI GCAGC 3 cut(s) 12, 246, 388
BccI CCATC 3 cut(s) 161, 506, 581
BceAI ACGGC 5 cut(s) 358, 432, 479, 481, 549
BcnI CCSGG 2 cut(s) 198, 241
BcoDI GTCTC 2 cut(s) 64, 390
BfaI CTAG 3 cut(s) 5, 225, 549
BfmI CTRYAG 2 cut(s) 87, 577
BfoI RGCGCY 2 cut(s) 273, 328
BisI GCNGC 9 cut(s) 26, 29, 32, 235, 273, 276, 308, 402, 420
BlsI GCNGC 9 cut(s) 27, 30, 33, 236, 274, 277, 309, 403, 421
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 198, 241
BmeRI GACNNNNNGTC 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 94, 326, 346
BmrFI CCNGG 2 cut(s) 198, 241
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 198, 241
BsaHI GRCGYC 2 cut(s) 325, 435
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 458, 483
Bse118I RCCGGY 2 cut(s) 352, 556
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 3 cut(s) 197, 458, 483
BseRI GAGGAG 6 cut(s) 28, 43, 52, 55, 328, 400
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 3 cut(s) 12, 246, 388
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 2 cut(s) 186, 422
Bsh1285I CGRYCG 2 cut(s) 109, 420
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 2 cut(s) 324, 344
BsiEI CGRYCG 2 cut(s) 109, 420
BsiHKAI GWGCWC 2 cut(s) 116, 169
BsiSI CCGG 4 cut(s) 198, 240, 353, 557
BslI CCNNNNNNNGG 3 cut(s) 197, 458, 483
BsmAI GTCTC 2 cut(s) 64, 390
BsmBI CGTCTC 1 cut(s) 390
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 116, 169
Bsp143I GATC 3 cut(s) 7, 70, 106
BspANI GGCC 1 cut(s) 419
BspFNI CGCG 2 cut(s) 186, 422
BspLI GGNNCC 3 cut(s) 94, 326, 346
BspPI GGATC 1 cut(s) 2
BspQI GCTCTTC 1 cut(s) 260
BspT107I GGYRCC 2 cut(s) 324, 344
BsrFI RCCGGY 2 cut(s) 352, 556
BssAI RCCGGY 2 cut(s) 352, 556
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 3 cut(s) 7, 70, 106
BssNI GRCGYC 2 cut(s) 325, 435
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 2 cut(s) 325, 435
BstC8I GCNNGC 3 cut(s) 176, 354, 449
BstDSI CCRYGG 1 cut(s) 420
BstFNI CGCG 2 cut(s) 186, 422
BstH2I RGCGCY 2 cut(s) 273, 328
BstHHI GCGC 2 cut(s) 272, 327
BstKTI GATC 3 cut(s) 10, 73, 109
BstMAI GTCTC 2 cut(s) 64, 390
BstMBI GATC 3 cut(s) 7, 70, 106
BstMCI CGRYCG 2 cut(s) 109, 420
BstMWI GCNNNNNNNGC 4 cut(s) 31, 234, 284, 358
BstSCI CCNGG 2 cut(s) 196, 239
BstSFI CTRYAG 2 cut(s) 87, 577
BstUI CGCG 2 cut(s) 186, 422
BstV1I GCAGC 3 cut(s) 12, 246, 388
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 417
BsuRI GGCC 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 3 cut(s) 176, 354, 449
CfoI GCGC 2 cut(s) 272, 327
Cfr10I RCCGGY 2 cut(s) 352, 556
Cfr42I CCGCGG 1 cut(s) 423
CseI GACGC 2 cut(s) 407, 424
Csp6I GTAC 2 cut(s) 222, 522
CviAII CATG 1 cut(s) 439
CviQI GTAC 2 cut(s) 222, 522
DinI GGCGCC 1 cut(s) 326
DpnI GATC 3 cut(s) 9, 72, 108
DpnII GATC 3 cut(s) 7, 70, 106
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 417
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 260
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 2 cut(s) 325, 483
Ecl136II GAGCTC 1 cut(s) 167
EclXI CGGCCG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 169
Eco52I CGGCCG 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 1 cut(s) 442
FaiI YATR 3 cut(s) 23, 296, 440
FatI CATG 1 cut(s) 438
FauI CCCGC 2 cut(s) 157, 295
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 9 cut(s) 26, 29, 32, 235, 273, 276, 308, 402, 420
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 9 cut(s) 26, 29, 32, 235, 273, 276, 308, 402, 420
FspBI CTAG 3 cut(s) 5, 225, 549
GlaI GCGC 2 cut(s) 271, 326
GluI GCNGC 9 cut(s) 26, 29, 32, 235, 273, 276, 308, 402, 420
GsaI CCCAGC 1 cut(s) 540
HaeII RGCGCY 2 cut(s) 273, 328
HaeIII GGCC 1 cut(s) 419
HapII CCGG 4 cut(s) 198, 240, 353, 557
HgaI GACGC 2 cut(s) 407, 424
HhaI GCGC 2 cut(s) 272, 327
Hin1I GRCGYC 2 cut(s) 325, 435
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 2 cut(s) 270, 325
HinP1I GCGC 2 cut(s) 270, 325
HinfI GANTC 1 cut(s) 83
HpaII CCGG 4 cut(s) 198, 240, 353, 557
HphI GGTGA 2 cut(s) 148, 454
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 6 cut(s) 12, 70, 111, 164, 171, 395
Hpy188III TCNNGA 4 cut(s) 74, 104, 374, 549
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 5 cut(s) 286, 344, 482, 502, 535
HpyAV CCTTC 3 cut(s) 106, 169, 425
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 234, 284, 358
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 2 cut(s) 325, 435
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 2 cut(s) 270, 325
KasI GGCGCC 1 cut(s) 324
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
KspI CCGCGG 1 cut(s) 423
Kzo9I GATC 3 cut(s) 7, 70, 106
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 5 cut(s) 98, 111, 172, 242, 424
Lsp1109I GCAGC 3 cut(s) 12, 246, 388
MaeI CTAG 3 cut(s) 5, 225, 549
MaeII ACGT 1 cut(s) 119
MalI GATC 3 cut(s) 9, 72, 108
MboI GATC 3 cut(s) 7, 70, 106
MboII GAAGA 4 cut(s) 256, 262, 277, 482
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 116, 169
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 4 cut(s) 198, 240, 353, 557
MspR9I CCNGG 2 cut(s) 198, 241
MvnI CGCG 2 cut(s) 186, 422
MwoI GCNNNNNNNGC 4 cut(s) 31, 234, 284, 358
NaeI GCCGGC 1 cut(s) 354
NarI GGCGCC 1 cut(s) 325
NciI CCSGG 2 cut(s) 198, 241
NdeII GATC 3 cut(s) 7, 70, 106
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 3 cut(s) 94, 326, 346
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 9 cut(s) 27, 30, 33, 236, 274, 277, 309, 403, 421
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 169
Psp1406I AACGTT 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 94, 326, 346
PsuI RGATCY 1 cut(s) 7
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 2 cut(s) 223, 523
RsaNI GTAC 2 cut(s) 222, 522
SacI GAGCTC 1 cut(s) 169
SacII CCGCGG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 260
SatI GCNGC 9 cut(s) 26, 29, 32, 235, 273, 276, 308, 402, 420
Sau3AI GATC 3 cut(s) 7, 70, 106
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 198, 241
SduI GDGCHC 2 cut(s) 116, 169
SfcI CTRYAG 2 cut(s) 87, 577
SfoI GGCGCC 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 423
SgrBI CCGCGG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 3 cut(s) 5, 225, 549
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 2 cut(s) 196, 239
TaiI ACGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 75, 500, 530
TatI WGTACW 1 cut(s) 221
TauI GCSGC 6 cut(s) 31, 34, 275, 278, 310, 422
TscAI CASTG 1 cut(s) 574
TseI GCWGC 3 cut(s) 25, 234, 401
TspDTI ATGAA 1 cut(s) 516
TspRI CASTG 1 cut(s) 574
XbaI TCTAGA 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 3 cut(s) 5, 225, 549
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.