Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

21432406 .. 21433555

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGCAGATTGGGGAGGAAGAAGGTGCAGAGGAAGTGCAAGATCAGAGGGTACACGCTTGAACCGGACGCAGTCAACGAGATGCTCTCCTTCGCATCCAATTTCGACGACTCTGCTCCCGACGACGACGCCATCGATCTCCTCCTCGACTTCCTCGAGACCCAACCCCGAAAAGACAAGGAGACGGTGCACCGCCTCGCTACCAAACTGTCGCGTGCTGACGCGGCCATCTACGACGGCGATGATGACTGTGTTACTGGTACATCTGAAACTGATTGGCACATAATTGATGCCTTCAAGGTCCCAAAGTTCCGATACGATCCCATCAAGAAAAGTTTTTACAAGCATGCTGGGAGATTACCTATTCATGGCGAAGCATCCGCCAAATCGGCACTGCACAAGGATAGGCTTCTCTTGCTCTCCCAGATTATCTCTCGCCATAAGGAGTTTTCCAGACCAGCATTTGGTTCTAAATCGTCTGATTCAGGTCCCCGCGAGATATCTCCAATTCAGTCTCTGATTGGGCAAACCGGAAGGAGATGGGTGATGGGAATGATATCTCAGTTGGAGGATGGTCATTTTTACTTGGAAGACCTTTCTTCGTCTGTGGAAATTGACTTATCGAATACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

212

Amino Acids

23.84

Weight (kDa)

6.66

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccII	CGCG	3 cut(s)	214, 224, 495
AciI	CCGC	4 cut(s)	193, 224, 381, 493
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	53, 262
AfiI	CCNNNNNNNGG	2 cut(s)	368, 464
AgsI	TTSAA	2 cut(s)	62, 298
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	152, 176, 519
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	225
ApaLI	GTGCAC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	301, 488
AsuHPI	GGTGA	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	301, 488
BaeGI	GKGCMC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	6 cut(s)	140, 236, 332, 534, 541, 566
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcoDI	GTCTC	3 cut(s)	152, 176, 519
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	301, 488
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	301, 488
BmiI	GGNNCC	2 cut(s)	303, 490
BmsI	GCATC	4 cut(s)	72, 104, 280, 386
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	2 cut(s)	64, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 464
Bse1I	ACTGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	135
BseGI	GGATG	3 cut(s)	95, 377, 577
BseLI	CCNNNNNNNGG	2 cut(s)	368, 464
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	131, 134
BseSI	GKGCMC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	2 cut(s)	47, 380
Bsh1236I	CGCG	3 cut(s)	214, 224, 495
BshFI	GGCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	65, 531
BslFI	GGGAC	2 cut(s)	287, 474
BslI	CCNNNNNNNGG	2 cut(s)	368, 464
BsmAI	GTCTC	3 cut(s)	152, 176, 519
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	287, 474
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	42, 136, 319
BspACI	CCGC	4 cut(s)	193, 224, 381, 493
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	574
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	3 cut(s)	214, 224, 495
BspLI	GGNNCC	2 cut(s)	303, 490
BspPI	GGATC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	42, 136, 319
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	187, 210, 251
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	216, 348
BstDEI	CTNAG	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	95, 377, 577
BstFNI	CGCG	3 cut(s)	214, 224, 495
BstKTI	GATC	3 cut(s)	45, 139, 322
BstMAI	GTCTC	3 cut(s)	152, 176, 519
BstMBI	GATC	3 cut(s)	42, 136, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 389, 415
BstNSI	RCATGY	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	3 cut(s)	214, 224, 495
BstV2I	GAAGAC	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	95, 377, 577
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	216, 348
CaiI	CAGNNNCTG	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	301, 488
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	3 cut(s)	77, 137, 230
Csp6I	GTAC	2 cut(s)	52, 261
CviAII	CATG	2 cut(s)	347, 368
CviJI	RGCY	2 cut(s)	227, 409
CviKI_1	RGCY	2 cut(s)	227, 409
CviQI	GTAC	2 cut(s)	52, 261
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	44, 138, 321
DpnII	GATC	3 cut(s)	42, 136, 319
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	2 cut(s)	501, 558
Eco47I	GGWCC	2 cut(s)	301, 488
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	2 cut(s)	301, 488
EcoRV	GATATC	2 cut(s)	501, 558
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	350, 371
FaiI	YATR	4 cut(s)	284, 348, 369, 441
FaqI	GGGAC	2 cut(s)	287, 474
FatI	CATG	2 cut(s)	346, 367
FauI	CCCGC	1 cut(s)	500
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	82, 364, 584
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	65, 531
HgaI	GACGC	3 cut(s)	77, 137, 230
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	350, 371
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	110, 482
HpaII	CCGG	2 cut(s)	65, 531
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	3 cut(s)	54, 76, 190
Hpy188I	TCNGA	5 cut(s)	47, 268, 314, 481, 519
Hpy188III	TCNNGA	4 cut(s)	119, 157, 328, 453
Hpy8I	GTNNAC	3 cut(s)	54, 76, 190
Hpy99I	CGWCG	5 cut(s)	110, 125, 128, 131, 239
HpyAV	CCTTC	4 cut(s)	16, 100, 304, 528
HpyCH4III	ACNGT	3 cut(s)	187, 210, 251
HpyCH4V	TGCA	4 cut(s)	28, 39, 190, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 389, 415
HpyF3I	CTNAG	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	350, 371
Kzo9I	GATC	3 cut(s)	42, 136, 319
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	78, 243, 336, 437, 466, 471, 471, 544
LweI	GCATC	4 cut(s)	72, 104, 280, 386
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	44, 138, 321
MboI	GATC	3 cut(s)	42, 136, 319
MboII	GAAGA	3 cut(s)	31, 591, 602
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	100, 285, 507, 612
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	9, 24, 41, 152, 155, 164, 206, 562
MspI	CCGG	2 cut(s)	65, 531
MvnI	CGCG	3 cut(s)	214, 224, 495
MwoI	GCNNNNNNNGC	3 cut(s)	224, 389, 415
NdeII	GATC	3 cut(s)	42, 136, 319
NlaIII	CATG	2 cut(s)	350, 371
NlaIV	GGNNCC	2 cut(s)	303, 490
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 132, 153
PfeI	GAWTC	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PpuMI	RGGWCCY	2 cut(s)	301, 488
Psp5II	RGGWCCY	2 cut(s)	301, 488
PspFI	CCCAGC	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	303, 490
PspPI	GGNCC	2 cut(s)	301, 488
PspPPI	RGGWCCY	2 cut(s)	301, 488
PstNI	CAGNNNCTG	1 cut(s)	517
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	53, 262
RsaNI	GTAC	2 cut(s)	52, 261
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	42, 136, 319
Sau96I	GGNCC	2 cut(s)	301, 488
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	27, 303, 364, 490, 597
SfaNI	GCATC	4 cut(s)	72, 104, 280, 386
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	301, 488
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	4 cut(s)	100, 285, 507, 612
SsiI	CCGC	4 cut(s)	193, 224, 381, 493
TaaI	ACNGT	3 cut(s)	187, 210, 251
TaqI	TCGA	5 cut(s)	105, 135, 147, 156, 623
TasI	AATT	4 cut(s)	100, 285, 507, 612
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	482
TscAI	CASTG	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	464
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	301, 488
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.