pycom15g01330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005348
Physical Location & Seq
Reverse (-)
778223 .. 779603
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGAAACGAAAACGACATCGTTCCGTACACGCTTAAATCTTCTCGACCTAATTTTCTTCCTCCGAAAAATTGAAAGCTTTGGTGGTTCGATGGAGGCTAGCAAGAAGGGCTACGCGTGGGCAGTTTCAGCCGGACTCTGTGCCGCTTCCGCCGCCGTTTCGGCGAAGCTCATCGGTCCTCAGATTGCAAAGTACGGTTTCGTGGTATTATTCATCGTGGCAATGTGGGGTTGTTTTGTGCAAAGCTTAAAAGGTATCTCGGCTCTGCAAGCTACAGCGACGAACTTTGCTACCAACTTCCTCATTTCTGGTCTGGCTGGATACTTTTGGTTTCAAGAACCCTTATCCGAGAAGTGGTTTGCAGGCGCCCTGCTCATTGGAGTTGCTGCACTCATACTTAGTAAGTTAAGTATTTTGATGAAGGCTCGTACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

146

Amino Acids

15.67

Weight (kDa)

9.7

Isoelectric Point (pI)

18.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AccII CGCG 1 cut(s) 116
AciI CCGC 3 cut(s) 144, 150, 153
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 3 cut(s) 28, 194, 430
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 74, 335
AluBI AGCT 4 cut(s) 78, 169, 246, 272
AluI AGCT 4 cut(s) 78, 169, 246, 272
ApeKI GCWGC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 140
BciVI GTATCC 1 cut(s) 314
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 369
BfuI GTATCC 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 144, 153, 387
BlsI GCNGC 3 cut(s) 145, 154, 388
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 354
BspACI CCGC 3 cut(s) 144, 150, 153
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 100, 270, 364
BstDEI CTNAG 2 cut(s) 180, 398
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstMWI GCNNNNNNNGC 6 cut(s) 108, 128, 149, 152, 161, 269
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 373
BsuI GTATCC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 100, 270, 364
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 3 cut(s) 27, 193, 429
CviQI GTAC 3 cut(s) 27, 193, 429
DdeI CTNAG 2 cut(s) 180, 398
DinI GGCGCC 1 cut(s) 367
EciI GGCGGA 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
FaiI YATR 1 cut(s) 395
Fnu4HI GCNGC 3 cut(s) 144, 153, 387
Fsp4HI GCNGC 3 cut(s) 144, 153, 387
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 144, 153, 387
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 366
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 2 cut(s) 76, 244
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 65, 183, 349
Hpy188III TCNNGA 2 cut(s) 44, 335
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 100, 415
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 5 cut(s) 188, 241, 268, 362, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 128, 149, 152, 161, 269
HpyF3I CTNAG 2 cut(s) 180, 398
Hsp92I GRCGYC 1 cut(s) 366
HspAI GCGC 1 cut(s) 366
KasI GGCGCC 1 cut(s) 365
LpnPI CCDG 6 cut(s) 145, 294, 299, 303, 348, 383
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 99
MboII GAAGA 2 cut(s) 32, 49
MluCI AATT 2 cut(s) 51, 69
MluI ACGCGT 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 4 cut(s) 71, 88, 189, 311
MseI TTAA 3 cut(s) 35, 248, 407
MspI CCGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 6 cut(s) 108, 128, 149, 152, 161, 269
NarI GGCGCC 1 cut(s) 366
NheI GCTAGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 367
NmeAIII GCCGAG 1 cut(s) 239
PkrI GCNGC 3 cut(s) 145, 154, 388
PleI GAGTC 1 cut(s) 129
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 3 cut(s) 28, 194, 430
RsaNI GTAC 3 cut(s) 27, 193, 429
SaqAI TTAA 3 cut(s) 35, 248, 407
SatI GCNGC 3 cut(s) 144, 153, 387
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 129
SetI ASST 6 cut(s) 51, 80, 171, 248, 256, 274
SfcI CTRYAG 1 cut(s) 273
SfoI GGCGCC 1 cut(s) 367
SinI GGWCC 1 cut(s) 176
Sse9I AATT 2 cut(s) 51, 69
SsiI CCGC 3 cut(s) 144, 150, 153
SspDI GGCGCC 1 cut(s) 365
SspMI CTAG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 45, 89
TaqII GACCGA 1 cut(s) 164
TasI AATT 2 cut(s) 51, 69
TauI GCSGC 2 cut(s) 146, 155
Tru1I TTAA 3 cut(s) 35, 248, 407
Tru9I TTAA 3 cut(s) 35, 248, 407
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 202, 434
TspGWI ACGGA 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.