pycom15g02980

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015564
Physical Location & Seq
Reverse (-)
1837783 .. 1839104
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGGCAGCCACTAGATTATTGCGCACGTTTAAGCCAATGACTTTTCATTCCTCCTCTTCTTCTTCATCTTCATTTTCTCCGCCATCAACGACCCTGAAGTCTTTGAGCAAGGGCGGAAGAATAAACGGAGAGAAGGGACTTACTAGGAACGATAATGATAGTCACGAGAGGAAGCAAATGCACGCAGTAGCTGTGAAGGCGTCGGCAACCACGTTGGCAGAACCACAAGTCGAGAATCGGGGAGGATTACTCGTAGAATTGGCTTCCCTGGTCGGAAAGGCCAACCGTGCTTTGTCCATTCTACTGAGAACGGCTCTCAGACCAAAGTCTTTGAGACAGCAAGTCCAGATGTTCATTGAAAGGGGGATAATAGACTGTCGATTCTTTACATTACTTGCAGTTGCGGGATCTTTACTCGGTTCAGTACTGTGCTTTGTAGAGGGTTGCTTTATTGTTCTAGAGTCATATTTCCAGTATTTCCATGCCTTGTCACACAAGACGGATCAAGGCCATATGGTGCATCTTCTTATTGAAGCAATTGATATGTTCCTGGTAGGAACCGCCATGCTTATTTTCGCGGTTGGGTTGTATGCCATGTTCGTCGGGTCAAAGGCCGCGAAAGAAAGAGGACCGCGGTTTTCCGACTCAAACTTGTTTGGTCTCTTCTACATGAAGGCACCTCCAGCATGGGTTAACATGCAATCAGTTTCGCAAGCGAAATCAAAAATAGGGCATGCGGTGGTAATGATACTGCAAGTTGGACTGCTGGAAAAGTTCAAGAGCATACCTCTAGTTACGCCGCTCGATCTTGCTTGCTTTGCTGGATCTGTGCTTCTTTCCTCTGCTGGTATCTTCCTTCTCTCGAGACTCTCTGCCACTGCAAGCCCCGCTGCAACTGGTGTACATGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

305

Amino Acids

32.84

Weight (kDa)

9.94

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 123 - 259 8.9e-34 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
Acc16I TGCGCA 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 676
AccBSI CCGCTC 1 cut(s) 802
AccII CGCG 3 cut(s) 578, 617, 634
AclWI GGATC 3 cut(s) 415, 510, 832
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 2 cut(s) 426, 903
AgsI TTSAA 3 cut(s) 359, 533, 778
AhdI GACNNNNNGTC 1 cut(s) 341
AjnI CCWGG 2 cut(s) 267, 549
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 3 cut(s) 328, 665, 859
AlwI GGATC 3 cut(s) 415, 510, 832
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 3 cut(s) 279, 508, 612
ApeKI GCWGC 2 cut(s) 5, 890
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 862
AvaII GGWCC 1 cut(s) 629
BanI GGYRCC 1 cut(s) 676
BauI CACGAG 1 cut(s) 164
BbvI GCAGC 2 cut(s) 17, 877
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 269, 551
BcoDI GTCTC 3 cut(s) 328, 665, 859
BfaI CTAG 4 cut(s) 12, 144, 458, 791
BisI GCNGC 4 cut(s) 6, 615, 800, 891
BlsI GCNGC 4 cut(s) 7, 616, 801, 892
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 269, 551
Bme18I GGWCC 1 cut(s) 629
BmeRI GACNNNNNGTC 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 2 cut(s) 559, 678
BmrFI CCNGG 2 cut(s) 269, 551
BmsI GCATC 1 cut(s) 529
BoxI GACNNNNGTC 1 cut(s) 325
BplI GAGNNNNNCTC 6 cut(s) 234, 266, 298, 330, 772, 804
BpmI CTGGAG 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 267, 632
Bse1I ACTGG 2 cut(s) 472, 901
BseBI CCWGG 2 cut(s) 269, 551
BseDI CCNNGG 2 cut(s) 267, 632
BseMII CTCAG 2 cut(s) 296, 331
BseNI ACTGG 2 cut(s) 472, 901
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 17, 877
Bsh1236I CGCG 3 cut(s) 578, 617, 634
BshFI GGCC 3 cut(s) 281, 510, 614
BshNI GGYRCC 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 862
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 328, 665, 859
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 3 cut(s) 281, 510, 614
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 4 cut(s) 407, 502, 805, 824
BspANI GGCC 3 cut(s) 281, 510, 614
BspCNI CTCAG 2 cut(s) 297, 330
BspFNI CGCG 3 cut(s) 578, 617, 634
BspLI GGNNCC 2 cut(s) 559, 678
BspPI GGATC 3 cut(s) 415, 510, 832
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 665
BsrBI CCGCTC 1 cut(s) 802
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 2 cut(s) 472, 901
BssECI CCNNGG 2 cut(s) 267, 632
BssMI GATC 4 cut(s) 407, 502, 805, 824
BssNI GRCGYC 1 cut(s) 200
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 269, 551
Bst4CI ACNGT 3 cut(s) 287, 377, 429
Bst6I CTCTTC 2 cut(s) 61, 668
BstACI GRCGYC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 5 cut(s) 183, 714, 735, 814, 883
BstDEI CTNAG 2 cut(s) 305, 317
BstDSI CCRYGG 1 cut(s) 632
BstFNI CGCG 3 cut(s) 578, 617, 634
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 4 cut(s) 410, 505, 808, 827
BstMAI GTCTC 3 cut(s) 328, 665, 859
BstMBI GATC 4 cut(s) 407, 502, 805, 824
BstMWI GCNNNNNNNGC 5 cut(s) 197, 287, 683, 818, 887
BstNI CCWGG 2 cut(s) 269, 551
BstNSI RCATGY 2 cut(s) 700, 737
BstPAI GACNNNNGTC 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 267, 549
BstUI CGCG 3 cut(s) 578, 617, 634
BstV1I GCAGC 2 cut(s) 17, 877
BstX2I RGATCY 2 cut(s) 407, 824
BstYI RGATCY 2 cut(s) 407, 824
BsuRI GGCC 3 cut(s) 281, 510, 614
BtgI CCRYGG 1 cut(s) 632
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 1 cut(s) 876
Cac8I GCNNGC 5 cut(s) 183, 714, 735, 814, 883
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 629
Cfr42I CCGCGG 1 cut(s) 635
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 425, 902
CviAII CATG 8 cut(s) 482, 565, 595, 670, 687, 697, 734, 905
CviJI RGCY 9 cut(s) 8, 34, 191, 263, 281, 314, 510, 614, 885
CviKI_1 RGCY 9 cut(s) 8, 34, 191, 263, 281, 314, 510, 614, 885
CviQI GTAC 2 cut(s) 425, 902
DdeI CTNAG 2 cut(s) 305, 317
DpnI GATC 4 cut(s) 409, 504, 807, 826
DpnII GATC 4 cut(s) 407, 502, 805, 824
DrdI GACNNNNNNGTC 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 61, 668
Eam1105I GACNNNNNGTC 1 cut(s) 341
EarI CTCTTC 2 cut(s) 61, 668
EciI GGCGGA 2 cut(s) 69, 129
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 267, 549
FaeI CATG 8 cut(s) 485, 568, 598, 673, 690, 700, 737, 908
FaqI GGGAC 1 cut(s) 150
FatI CATG 8 cut(s) 481, 564, 594, 669, 686, 696, 733, 904
FauI CCCGC 2 cut(s) 397, 895
FauNDI CATATG 1 cut(s) 513
Fnu4HI GCNGC 4 cut(s) 6, 615, 800, 891
Fsp4HI GCNGC 4 cut(s) 6, 615, 800, 891
FspBI CTAG 4 cut(s) 12, 144, 458, 791
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 4 cut(s) 6, 615, 800, 891
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 3 cut(s) 281, 510, 614
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 8 cut(s) 485, 568, 598, 673, 690, 700, 737, 908
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 5 cut(s) 235, 381, 461, 644, 867
HpaI GTTAAC 1 cut(s) 694
Hpy166II GTNNAC 2 cut(s) 694, 902
Hpy188I TCNGA 3 cut(s) 275, 320, 643
Hpy188III TCNNGA 7 cut(s) 164, 232, 346, 458, 778, 862, 864
Hpy8I GTNNAC 2 cut(s) 694, 902
Hpy99I CGWCG 2 cut(s) 205, 605
HpyAV CCTTC 4 cut(s) 127, 190, 667, 866
HpyCH4III ACNGT 3 cut(s) 287, 377, 429
HpyCH4IV ACGT 2 cut(s) 26, 212
HpyCH4V TGCA 7 cut(s) 181, 398, 520, 700, 754, 881, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 287, 683, 818, 887
HpyF3I CTNAG 2 cut(s) 305, 317
HpySE526I ACGT 2 cut(s) 26, 212
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 8 cut(s) 485, 568, 598, 673, 690, 700, 737, 908
HspAI GCGC 1 cut(s) 22
KspAI GTTAAC 1 cut(s) 694
KspI CCGCGG 1 cut(s) 635
Kzo9I GATC 4 cut(s) 407, 502, 805, 824
Lsp1109I GCAGC 2 cut(s) 17, 877
LweI GCATC 1 cut(s) 529
MaeI CTAG 4 cut(s) 12, 144, 458, 791
MaeII ACGT 2 cut(s) 26, 212
MaeIII GTNAC 3 cut(s) 161, 489, 793
MalI GATC 4 cut(s) 409, 504, 807, 826
MbiI CCGCTC 1 cut(s) 802
MboI GATC 4 cut(s) 407, 502, 805, 824
MboII GAAGA 8 cut(s) 48, 51, 54, 60, 129, 515, 655, 844
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 407, 824
MluCI AATT 2 cut(s) 257, 537
MlyI GAGTC 3 cut(s) 470, 638, 861
MmeI TCCRAC 3 cut(s) 253, 666, 739
MnlI CCTC 9 cut(s) 61, 64, 162, 236, 433, 620, 690, 798, 850
MseI TTAA 2 cut(s) 30, 693
MspA1I CMGCKG 2 cut(s) 634, 890
MspR9I CCNGG 2 cut(s) 269, 551
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 2 cut(s) 269, 551
MvnI CGCG 3 cut(s) 578, 617, 634
MwoI GCNNNNNNNGC 5 cut(s) 197, 287, 683, 818, 887
NdeI CATATG 1 cut(s) 513
NdeII GATC 4 cut(s) 407, 502, 805, 824
NlaIII CATG 8 cut(s) 485, 568, 598, 673, 690, 700, 737, 908
NlaIV GGNNCC 2 cut(s) 559, 678
NmuCI GTSAC 2 cut(s) 161, 489
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 2 cut(s) 700, 737
PaeI GCATGC 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 862
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PfeI GAWTC 2 cut(s) 235, 381
PkrI GCNGC 4 cut(s) 7, 616, 801, 892
PleI GAGTC 3 cut(s) 469, 638, 861
PpsI GAGTC 3 cut(s) 469, 638, 861
PshAI GACNNNNGTC 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 267, 549
PspGI CCWGG 2 cut(s) 267, 549
PspN4I GGNNCC 2 cut(s) 559, 678
PspPI GGNCC 1 cut(s) 629
PsrI GAACNNNNNNTAC 2 cut(s) 581, 613
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 407, 824
RsaI GTAC 2 cut(s) 426, 903
RsaNI GTAC 2 cut(s) 425, 902
SacII CCGCGG 1 cut(s) 635
SaqAI TTAA 2 cut(s) 30, 693
SatI GCNGC 4 cut(s) 6, 615, 800, 891
Sau3AI GATC 4 cut(s) 407, 502, 805, 824
Sau96I GGNCC 1 cut(s) 629
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 3 cut(s) 470, 638, 861
ScrFI CCNGG 2 cut(s) 269, 551
SetI ASST 5 cut(s) 29, 193, 215, 682, 790
SfaNI GCATC 1 cut(s) 529
Sfr274I CTCGAG 1 cut(s) 862
Sfr303I CCGCGG 1 cut(s) 635
SgrBI CCGCGG 1 cut(s) 635
SinI GGWCC 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 862
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SphI GCATGC 1 cut(s) 737
Sse9I AATT 2 cut(s) 257, 537
SspMI CTAG 4 cut(s) 12, 144, 458, 791
StyD4I CCNGG 2 cut(s) 267, 549
TaaI ACNGT 3 cut(s) 287, 377, 429
TaiI ACGT 2 cut(s) 29, 215
TaqI TCGA 4 cut(s) 231, 379, 804, 863
TasI AATT 2 cut(s) 257, 537
TatI WGTACW 2 cut(s) 424, 901
TauI GCSGC 2 cut(s) 617, 802
TfiI GAWTC 2 cut(s) 235, 381
Tru1I TTAA 2 cut(s) 30, 693
Tru9I TTAA 2 cut(s) 30, 693
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 2 cut(s) 161, 489
TseI GCWGC 2 cut(s) 5, 890
Tsp45I GTSAC 2 cut(s) 161, 489
TspDTI ATGAA 5 cut(s) 35, 54, 60, 343, 686
TspGWI ACGGA 2 cut(s) 141, 515
TspRI CASTG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 629
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 700, 737
XhoI CTCGAG 1 cut(s) 862
XspI CTAG 4 cut(s) 12, 144, 458, 791
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.