Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Reverse (-)

2191283 .. 2193113

Gene Structure 1831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGATCGGCTTTTTCTGCTTAGCTGTGTTCCTCATCTACAGCCTCGATCTCGACACCAGCTACGCCGCCACCGCTCCCACATCCGAGGGCGTCGAGATCACATACGGCACCGTACTGAAGCTGATGCACGAGAAGACCAAGTTTCGCTTGCATTCACACGACGTGCCGTATGGCTCTGGTAGTGGCCAGCAGTCAGTCACTGGTTTTCCCAATGTCGACGACGCTAATAGCTACTGGATTATTAAACCTGAGCTGGAAACAGCTGCCAAGCAAGGCGATAGCATTCCGAGCGGGACAATCATCAGGTTGCAGCACATGAGGACCAGGAAATGGCTGCACAGCCATTTGCATGCATCCCCAATTACTGGCAACCAAGAGGTCAGCTGTTTCGGGGGAGAAAATGAATCTGATACTGGTGATCACTGGAGGCTTACAATTGAAGGGAGCGGGAAGACTTGGAAGCAAGATCAAAGGGTTCGACTTCAGCATGTTGACACTGGTGTTTATTTACATAGTCATGACAAGAAGTACACCCGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAGAGATAAACGCGCTGACAATGTTTGGCTGGCAGCAGAAGGCGTGTACCTTCCAGTCACTGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

215

Amino Acids

23.85

Weight (kDa)

6.4

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	52 - 198	1.1e-16	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	2 cut(s)	333, 368
AccBSI	CCGCTC	3 cut(s)	77, 294, 450
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	585
AciI	CCGC	5 cut(s)	69, 75, 294, 450, 538
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	140, 470
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	166
AfaI	GTAC	3 cut(s)	117, 533, 620
AfiI	CCNNNNNNNGG	2 cut(s)	333, 368
AgsI	TTSAA	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	8 cut(s)	26, 63, 124, 234, 256, 266, 387, 545
AluI	AGCT	8 cut(s)	26, 63, 124, 234, 256, 266, 387, 545
AlwNI	CAGNNNCTG	2 cut(s)	203, 632
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	4 cut(s)	266, 313, 337, 605
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	143, 461
BbvI	GCAGC	4 cut(s)	253, 324, 325, 617
BceAI	ACGGC	2 cut(s)	124, 154
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	5 cut(s)	69, 267, 314, 338, 606
BlpI	GCTNAGC	1 cut(s)	22
BlsI	GCNGC	5 cut(s)	70, 268, 315, 339, 607
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	117, 365
BpiI	GAAGAC	2 cut(s)	143, 461
BpmI	CTGGAG	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 368
Bse1I	ACTGG	7 cut(s)	208, 242, 373, 421, 431, 505, 626
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	83, 356
BseLI	CCNNNNNNNGG	2 cut(s)	333, 368
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	7 cut(s)	208, 242, 373, 421, 431, 505, 626
BseXI	GCAGC	4 cut(s)	253, 324, 325, 617
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	310, 564
BslI	CCNNNNNNNGG	2 cut(s)	333, 368
BsmFI	GGGAC	2 cut(s)	310, 564
BsmI	GAATGC	2 cut(s)	154, 285
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	6, 49, 99, 421, 469
Bsp1720I	GCTNAGC	1 cut(s)	22
BspACI	CCGC	5 cut(s)	69, 75, 294, 450, 538
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	3 cut(s)	77, 294, 450
BsrI	ACTGG	7 cut(s)	208, 242, 373, 421, 431, 505, 626
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	5 cut(s)	6, 49, 99, 421, 469
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	152, 191, 354, 603
BstDEI	CTNAG	3 cut(s)	22, 252, 639
BstF5I	GGATG	2 cut(s)	83, 356
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	5 cut(s)	9, 52, 102, 424, 472
BstMBI	GATC	5 cut(s)	6, 49, 99, 421, 469
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 74, 291
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	356, 494
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	253, 324, 325, 617
BstV2I	GAAGAC	2 cut(s)	143, 461
BsuRI	GGCC	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	83, 356
BtsIMutI	CAGTG	4 cut(s)	201, 424, 498, 630
Cac8I	GCNNGC	4 cut(s)	152, 191, 354, 603
CaiI	CAGNNNCTG	2 cut(s)	203, 632
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	2 cut(s)	82, 233
Csp6I	GTAC	3 cut(s)	116, 532, 619
CviAII	CATG	4 cut(s)	319, 353, 491, 521
CviQI	GTAC	3 cut(s)	116, 532, 619
DdeI	CTNAG	3 cut(s)	22, 252, 639
DpnI	GATC	5 cut(s)	8, 51, 101, 423, 471
DpnII	GATC	5 cut(s)	6, 49, 99, 421, 469
DraIII	CACNNNGTG	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	140, 470
EcoRII	CCWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	4 cut(s)	322, 356, 494, 524
FaiI	YATR	8 cut(s)	106, 174, 320, 354, 492, 516, 522, 542
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	310, 564
FatI	CATG	4 cut(s)	318, 352, 490, 520
FauI	CCCGC	3 cut(s)	287, 443, 545
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	69, 267, 314, 338, 606
FokI	GGATG	2 cut(s)	70, 343
Fsp4HI	GCNGC	5 cut(s)	69, 267, 314, 338, 606
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	5 cut(s)	69, 267, 314, 338, 606
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	189
HgaI	GACGC	2 cut(s)	82, 233
HhaI	GCGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	322, 356, 494, 524
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	2 cut(s)	220, 496
HindII	GTYRAC	2 cut(s)	220, 496
HinfI	GANTC	1 cut(s)	407
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	4 cut(s)	220, 496, 534, 619
Hpy188I	TCNGA	3 cut(s)	88, 291, 412
Hpy188III	TCNNGA	3 cut(s)	53, 97, 521
Hpy8I	GTNNAC	4 cut(s)	220, 496, 534, 619
Hpy99I	CGWCG	4 cut(s)	98, 167, 224, 227
HpyAV	CCTTC	3 cut(s)	437, 605, 632
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	130, 154, 313, 340, 352, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 74, 291
HpyF3I	CTNAG	3 cut(s)	22, 252, 639
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	322, 356, 494, 524
HspAI	GCGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	6, 49, 99, 421, 469
LmnI	GCTCC	2 cut(s)	82, 447
Lsp1109I	GCAGC	4 cut(s)	253, 324, 325, 617
LweI	GCATC	2 cut(s)	117, 365
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	199, 628
MalI	GATC	5 cut(s)	8, 51, 101, 423, 471
MbiI	CCGCTC	3 cut(s)	77, 294, 450
MboI	GATC	5 cut(s)	6, 49, 99, 421, 469
MboII	GAAGA	2 cut(s)	148, 466
MfeI	CAATTG	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	363, 438
MluNI	TGGCCA	1 cut(s)	189
MnlI	CCTC	7 cut(s)	44, 56, 82, 315, 373, 423, 553
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	351, 519
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	266, 387
MspR9I	CCNGG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	154, 285
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	18, 74, 291
NdeII	GATC	5 cut(s)	6, 49, 99, 421, 469
NlaIII	CATG	4 cut(s)	322, 356, 494, 524
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	199, 628
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	356, 494
PaeI	GCATGC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	2 cut(s)	154, 285
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	2 cut(s)	333, 368
PkrI	GCNGC	5 cut(s)	70, 268, 315, 339, 607
Ple19I	CGATCG	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	324
PstNI	CAGNNNCTG	2 cut(s)	203, 632
PvuI	CGATCG	1 cut(s)	9
PvuII	CAGCTG	2 cut(s)	266, 387
RsaI	GTAC	3 cut(s)	117, 533, 620
RsaNI	GTAC	3 cut(s)	116, 532, 619
RseI	CAYNNNNRTG	2 cut(s)	351, 519
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	5 cut(s)	69, 267, 314, 338, 606
Sau3AI	GATC	5 cut(s)	6, 49, 99, 421, 469
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	2 cut(s)	117, 365
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	351, 519
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	2 cut(s)	363, 438
SsiI	CCGC	5 cut(s)	69, 75, 294, 450, 538
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	5 cut(s)	48, 54, 96, 219, 481
TasI	AATT	2 cut(s)	363, 438
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	4 cut(s)	208, 431, 505, 637
TseFI	GTSAC	2 cut(s)	199, 628
TseI	GCWGC	4 cut(s)	266, 313, 337, 605
Tsp45I	GTSAC	2 cut(s)	199, 628
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	4 cut(s)	208, 431, 505, 637
Van91I	CCANNNNNTGG	2 cut(s)	333, 368
VpaK11BI	GGWCC	1 cut(s)	324
XceI	RCATGY	2 cut(s)	356, 494
XmiI	GTMKAC	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.