Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Forward (+)

2255613 .. 2257462

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGACTCAACGTGGGTGAACACTTCTCTCGGCCTTAATCTTGTTCCGTTATGCAGTGCCGATGATCATCAAGCTCCTGCCACTATGCAACACGAGCTTGAACGGGATTATGCTCAATTCCAAGGGAATAACGCATTGGTGAAAGAAGAGGTAGCTAGTCATCATGATGTGTTGGCTGAAGAGTTGAATAGGATAAGTGTGGAGAACAAGAAGCTGACTGAGATGCTAACTGCCCTCTGCGAGAATTACAACTCTTTGCAATCCCATGTGAGAGAATTGATGATCACCAAGCAGCAGCAAAACAACTCATCTGATATTTATAGGAAGCGAAAGGCAGGCAGTGAAGACTACAACAACGTGATTGGATTAATTAGTCCCGGGGCTAATACTGACACCTGCTCCATCAGTGATGATCAAGAGTACTCATGCAAGAGGCCAAAGGAGCACGCCAACTTAAAGATTTCTAGGGTATATGTTCGCACCGATGCATCCGATACACGCCTGATTGTGAAGGATGGATACCAATGGAGAAAATATGGTCAGAAGGTCACAAGAGATAACCCGTCACCTAGGGCTTACTACAAGTGTTCCTTTGCCCCAAGTTGCCCTGTTAAAAAGAAGGTGCAAAAAAGTGCTGAAAATCCATGCGTACTGGTAGCTACATATGAAGGAGAACACAACCACATGCACCCTGAAAGCCGAGCTGAAGTTACACTAATAGCCCCAGTATCTCCAAATCAGAACCAGCAGCTTATTACTAGTACTCCACTTTCCGTTTCACCATCCATGGCAAAGAGATCTGCGCCTCCAACTTTTTCATGTGACATTAACCGGATAAGTCCCAATACTACTATGTGCCCCCAAGAAACTGAAGCAGCGGCGTTCCAACAGTTTTTGATACAACAAATGGCTTCTTCCTTGACCAAAGATCCCAATTTCACAACTGCTCTTGCTGCTGCCATTTCAGGAAGAATTTCAGACCACTCATCGATCCGAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

335

Amino Acids

37.35

Weight (kDa)

7.12

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	171 - 228	9.3e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	2 cut(s)	923, 985
AcsI	RAATTY	1 cut(s)	972
AcuI	CTGAAG	3 cut(s)	198, 726, 891
AfaI	GTAC	3 cut(s)	422, 651, 763
AgsI	TTSAA	2 cut(s)	101, 187
AhlI	ACTAGT	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	74, 97, 155, 214, 659, 704, 751
AluI	AGCT	7 cut(s)	74, 97, 155, 214, 659, 704, 751
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	923, 985
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	31, 434
ApeKI	GCWGC	6 cut(s)	292, 295, 748, 875, 953, 956
ApoI	RAATTY	1 cut(s)	972
AseI	ATTAAT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	973
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	805
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	5 cut(s)	28, 151, 277, 558, 771
AvaI	CYCGRG	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	860
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	6 cut(s)	304, 307, 760, 887, 940, 943
BccI	CCATC	3 cut(s)	410, 509, 790
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	3 cut(s)	64, 282, 412
BcnI	CCSGG	2 cut(s)	378, 379
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	4 cut(s)	156, 465, 570, 759
BfuAI	ACCTGC	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	797
BisI	GCNGC	7 cut(s)	293, 296, 749, 876, 879, 954, 957
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	7 cut(s)	294, 297, 750, 877, 880, 955, 958
BmcAI	AGTACT	2 cut(s)	422, 763
Bme1390I	CCNGG	2 cut(s)	378, 379
BmeT110I	CYCGRG	1 cut(s)	377
BmrFI	CCNGG	2 cut(s)	378, 379
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	3 cut(s)	213, 475, 497
BmuI	ACTGGG	1 cut(s)	719
BpiI	GAAGAC	1 cut(s)	351
BpuMI	CCSGG	2 cut(s)	378, 379
Bsa29I	ATCGAT	1 cut(s)	989
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	121, 377, 378, 569, 786
BsaWI	WCCGGW	1 cut(s)	831
BsaXI	ACNNNNNCTCC	4 cut(s)	383, 413, 748, 778
Bse1I	ACTGG	2 cut(s)	657, 725
Bse8I	GATNNNNATC	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	989
BseDI	CCNNGG	5 cut(s)	121, 377, 378, 569, 786
BseGI	GGATG	3 cut(s)	488, 520, 782
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	657, 725
BseSI	GKGCMC	1 cut(s)	860
BseXI	GCAGC	6 cut(s)	304, 307, 760, 887, 940, 943
BshFI	GGCC	2 cut(s)	33, 436
BshVI	ATCGAT	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	378, 832
BslFI	GGGAC	2 cut(s)	360, 825
BsmFI	GGGAC	2 cut(s)	360, 825
BsnI	GGCC	2 cut(s)	33, 436
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	447, 860
Bsp143I	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	2 cut(s)	33, 436
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	989
BspHI	TCATGA	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	923, 985
BsrI	ACTGG	2 cut(s)	657, 725
BssECI	CCNNGG	5 cut(s)	121, 377, 378, 569, 786
BssMI	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	121, 569, 786
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	891
Bst6I	CTCTTC	2 cut(s)	141, 174
BstC8I	GCNNGC	2 cut(s)	337, 447
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	3 cut(s)	488, 520, 782
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	6 cut(s)	67, 285, 415, 800, 931, 993
BstMBI	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 442, 953
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	376, 377
BstSLI	GKGCMC	1 cut(s)	860
BstV1I	GCAGC	6 cut(s)	304, 307, 760, 887, 940, 943
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	797, 928
BstYI	RGATCY	2 cut(s)	797, 928
Bsu15I	ATCGAT	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	33, 436
BsuTUI	ATCGAT	1 cut(s)	989
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	3 cut(s)	488, 520, 782
BtsI	GCAGTG	2 cut(s)	61, 346
BtsIMutI	CAGTG	3 cut(s)	61, 346, 412
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	337, 447
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	805
Cfr9I	CCCGGG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	421, 650, 762
CviAII	CATG	7 cut(s)	164, 266, 426, 645, 685, 787, 819
CviQI	GTAC	3 cut(s)	421, 650, 762
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	6 cut(s)	66, 284, 414, 799, 930, 992
DpnII	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
Eam1104I	CTCTTC	2 cut(s)	141, 174
EarI	CTCTTC	2 cut(s)	141, 174
Eco130I	CCWWGG	3 cut(s)	121, 569, 786
Eco57I	CTGAAG	3 cut(s)	198, 726, 891
Eco88I	CYCGRG	1 cut(s)	377
EcoT14I	CCWWGG	3 cut(s)	121, 569, 786
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	3 cut(s)	121, 569, 786
FaeI	CATG	7 cut(s)	167, 269, 429, 648, 688, 790, 822
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	360, 825
FatI	CATG	7 cut(s)	163, 265, 425, 644, 684, 786, 818
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	3 cut(s)	64, 282, 412
Fnu4HI	GCNGC	7 cut(s)	293, 296, 749, 876, 879, 954, 957
FokI	GGATG	3 cut(s)	475, 527, 769
Fsp4HI	GCNGC	7 cut(s)	293, 296, 749, 876, 879, 954, 957
FspBI	CTAG	4 cut(s)	156, 465, 570, 759
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	7 cut(s)	293, 296, 749, 876, 879, 954, 957
HaeIII	GGCC	2 cut(s)	33, 436
HapII	CCGG	2 cut(s)	378, 832
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	7 cut(s)	167, 269, 429, 648, 688, 790, 822
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	378, 832
HphI	GGTGA	5 cut(s)	28, 151, 277, 558, 771
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	313, 493, 543, 741, 979, 995
Hpy188III	TCNNGA	3 cut(s)	164, 416, 966
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	505, 538, 613, 662
HpyCH4III	ACNGT	1 cut(s)	891
HpyCH4IV	ACGT	2 cut(s)	11, 357
HpyCH4V	TGCA	7 cut(s)	54, 88, 259, 429, 488, 625, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 442, 953
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	2 cut(s)	11, 357
Hsp92II	CATG	7 cut(s)	167, 269, 429, 648, 688, 790, 822
HspAI	GCGC	1 cut(s)	803
Ksp22I	TGATCA	3 cut(s)	64, 282, 412
Kzo9I	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
LmnI	GCTCC	3 cut(s)	79, 404, 442
Lsp1109I	GCAGC	6 cut(s)	304, 307, 760, 887, 940, 943
LweI	GCATC	3 cut(s)	213, 475, 497
MaeI	CTAG	4 cut(s)	156, 465, 570, 759
MaeII	ACGT	2 cut(s)	11, 357
MaeIII	GTNAC	4 cut(s)	547, 564, 709, 821
MalI	GATC	6 cut(s)	66, 284, 414, 799, 930, 992
MboI	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
MboII	GAAGA	5 cut(s)	158, 191, 356, 906, 981
MflI	RGATCY	2 cut(s)	797, 928
MhlI	GDGCHC	2 cut(s)	447, 860
MluCI	AATT	6 cut(s)	116, 244, 275, 369, 934, 972
MmeI	TCCRAC	2 cut(s)	833, 910
MnlI	CCTC	4 cut(s)	142, 245, 426, 816
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	973
MseI	TTAA	5 cut(s)	36, 368, 455, 612, 828
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	378, 832
MspR9I	CCNGG	2 cut(s)	378, 379
MwoI	GCNNNNNNNGC	3 cut(s)	94, 442, 953
NciI	CCSGG	2 cut(s)	378, 379
NcoI	CCATGG	1 cut(s)	786
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
NlaIII	CATG	7 cut(s)	167, 269, 429, 648, 688, 790, 822
NmeAIII	GCCGAG	2 cut(s)	9, 725
NmuCI	GTSAC	3 cut(s)	547, 564, 821
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	688
PagI	TCATGA	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	973
PkrI	GCNGC	7 cut(s)	294, 297, 750, 877, 880, 955, 958
PshBI	ATTAAT	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	797, 928
RsaI	GTAC	3 cut(s)	422, 651, 763
RsaNI	GTAC	3 cut(s)	421, 650, 762
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	5 cut(s)	36, 368, 455, 612, 828
SatI	GCNGC	7 cut(s)	293, 296, 749, 876, 879, 954, 957
Sau3AI	GATC	6 cut(s)	64, 282, 412, 797, 928, 990
ScaI	AGTACT	2 cut(s)	422, 763
ScrFI	CCNGG	2 cut(s)	378, 379
SduI	GDGCHC	2 cut(s)	447, 860
SfaNI	GCATC	3 cut(s)	213, 475, 497
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	165
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	6 cut(s)	116, 244, 275, 369, 934, 972
SsiI	CCGC	1 cut(s)	878
SspMI	CTAG	4 cut(s)	156, 465, 570, 759
StyD4I	CCNGG	2 cut(s)	376, 377
StyI	CCWWGG	3 cut(s)	121, 569, 786
TaaI	ACNGT	1 cut(s)	891
TaiI	ACGT	2 cut(s)	14, 360
TaqI	TCGA	1 cut(s)	989
TasI	AATT	6 cut(s)	116, 244, 275, 369, 934, 972
TatI	WGTACW	2 cut(s)	420, 761
TauI	GCSGC	1 cut(s)	881
Tru1I	TTAA	5 cut(s)	36, 368, 455, 612, 828
Tru9I	TTAA	5 cut(s)	36, 368, 455, 612, 828
TscAI	CASTG	3 cut(s)	61, 346, 412
TseFI	GTSAC	3 cut(s)	547, 564, 821
TseI	GCWGC	6 cut(s)	292, 295, 748, 875, 953, 956
Tsp45I	GTSAC	3 cut(s)	547, 564, 821
TspDTI	ATGAA	2 cut(s)	681, 807
TspGWI	ACGGA	2 cut(s)	36, 763
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	3 cut(s)	61, 346, 412
VspI	ATTAAT	1 cut(s)	368
XapI	RAATTY	1 cut(s)	972
XceI	RCATGY	1 cut(s)	688
XmaI	CCCGGG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	973
XspI	CTAG	4 cut(s)	156, 465, 570, 759
ZrmI	AGTACT	2 cut(s)	422, 763
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.