pycom15g03980

Ubiquitinyl hydrolase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012946
Physical Location & Seq
Reverse (-)
2424410 .. 2425443
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03980.2

Sequence Viewer

Length: 567 bp
ATGGCTAAGCGCATGCTGGACTTGCCTTGCAGCACAAACAATGCGGATAGTATAGGGGAGAGACTGTGTGAGAGGAAGAGGCTGGGGGGTTCGAGTGTCGAATTATCAGAGTTTAAAAAGCCGGAAAAATCGTGTTTGGTGAGGGATCACAGAGCGAAATCGTGTTATCCGTTGGGTTTGAGGGGGTTGAATAATTTGGGGAATACTTGCTTTATGAACTCTGTGTTGCAAGCACTGCTACATGCACCTCCTTTGAGGAATTACTTCTTGAGTGATCGGCATAGCAGGAGAACGTGCCGGAAAAGGATGGCAAACCTGCTTTGTTTGCCTTGTGAGCTTCACGGTGTTTATTCGGCTGTGTATTCGGGCGATCAGACTCCTTACAGCCCGGCTGGATTGCTTTACAGCATTCGGAGAATCTGGCAAGTTACGAGCAGCAGGATGCTCATGAGTTCTTCATTTCCGTGTTGGATGGGATCCATGAGAAAGAAACCAAAGCAAGAAACCATACAAAAGATAGTGGAGACTGCCAGTGTATTGCGCATAGGGTATTCTCAGGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-UBP

Protein Analysis

189

Amino Acids

21.31

Weight (kDa)

9.67

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012946)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10790 AT5G10790
fragaria_vesca FvH4_2g41240
malus_domestica MD08G1052900.v1.1 MD15G1042700.v1.1
prunus_persica Prupe.1G396000_v2.0.a1
pyrus_communis pycom08g04410 pycom15g03980
rosa_chinensis RchiOBHm_Chr6g0299261
rosa_laevigata RLG00000011448
rosa_multiflora Rmu_sc0001434.1_g000005
rosa_roxburghii Rroxscaffold_7G00168850
rosa_rugosa Rorug06G0286700
rosa_samantha Rh6AG398000 Rh6BG406500 Rh6CG412600 Rh6DG399300
rosa_wichuraiana Rw6G034840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 324
AciI CCGC 1 cut(s) 44
AclWI GGATC 3 cut(s) 153, 471, 484
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 55, 518
AlwI GGATC 3 cut(s) 153, 471, 484
ApeKI GCWGC 2 cut(s) 30, 435
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 12, 543
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 151
BamHI GGATCC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 42, 447
BccI CCATC 2 cut(s) 301, 466
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 55, 518
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 2 cut(s) 31, 436
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 32, 437
Bme1390I CCNGG 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse1I ACTGG 1 cut(s) 531
BseGI GGATG 3 cut(s) 312, 447, 477
BseNI ACTGG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 42, 447
BseYI CCCAGC 1 cut(s) 82
BsiSI CCGG 3 cut(s) 122, 298, 389
BsmAI GTCTC 2 cut(s) 55, 518
BsmI GAATGC 1 cut(s) 408
Bsp143I GATC 4 cut(s) 145, 274, 370, 476
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 44
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 153, 471, 484
BsrI ACTGG 1 cut(s) 531
BssMI GATC 4 cut(s) 145, 274, 370, 476
Bst4CI ACNGT 2 cut(s) 66, 344
Bst6I CTCTTC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 14, 231
BstDEI CTNAG 2 cut(s) 6, 555
BstF5I GGATG 3 cut(s) 312, 447, 477
BstHHI GCGC 2 cut(s) 12, 543
BstKTI GATC 4 cut(s) 148, 277, 373, 479
BstMAI GTCTC 2 cut(s) 55, 518
BstMBI GATC 4 cut(s) 145, 274, 370, 476
BstMWI GCNNNNNNNGC 4 cut(s) 22, 235, 325, 334
BstNSI RCATGY 2 cut(s) 16, 245
BstSCI CCNGG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 42, 447
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 3 cut(s) 312, 447, 477
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 233, 538
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 14, 231
CciI TCATGA 1 cut(s) 447
CfoI GCGC 2 cut(s) 12, 543
CviAII CATG 4 cut(s) 13, 242, 448, 481
CviJI RGCY 7 cut(s) 5, 82, 121, 337, 356, 387, 392
CviKI_1 RGCY 7 cut(s) 5, 82, 121, 337, 356, 387, 392
DdeI CTNAG 2 cut(s) 6, 555
DpnI GATC 4 cut(s) 147, 276, 372, 478
DpnII GATC 4 cut(s) 145, 274, 370, 476
DraI TTTAAA 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 4 cut(s) 16, 245, 451, 484
FaiI YATR 9 cut(s) 14, 53, 215, 243, 282, 449, 482, 509, 545
FatI CATG 4 cut(s) 12, 241, 447, 480
Fnu4HI GCNGC 2 cut(s) 31, 436
FokI GGATG 3 cut(s) 319, 454, 484
Fsp4HI GCNGC 2 cut(s) 31, 436
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 2 cut(s) 11, 542
GluI GCNGC 2 cut(s) 31, 436
GsaI CCCAGC 1 cut(s) 86
HapII CCGG 3 cut(s) 122, 298, 389
HhaI GCGC 2 cut(s) 12, 543
Hin1II CATG 4 cut(s) 16, 245, 451, 484
Hin6I GCGC 2 cut(s) 10, 541
HinP1I GCGC 2 cut(s) 10, 541
HinfI GANTC 2 cut(s) 376, 417
HpaII CCGG 3 cut(s) 122, 298, 389
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 109, 375, 414
Hpy188III TCNNGA 3 cut(s) 268, 448, 557
HpyCH4III ACNGT 2 cut(s) 66, 344
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 30, 229, 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 235, 325, 334
HpyF3I CTNAG 2 cut(s) 6, 555
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 4 cut(s) 16, 245, 451, 484
HspAI GCGC 2 cut(s) 10, 541
Kzo9I GATC 4 cut(s) 145, 274, 370, 476
Lsp1109I GCAGC 2 cut(s) 42, 447
LweI GCATC 1 cut(s) 432
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 427
MalI GATC 4 cut(s) 147, 276, 372, 478
MboI GATC 4 cut(s) 145, 274, 370, 476
MboII GAAGA 2 cut(s) 88, 447
MflI RGATCY 1 cut(s) 476
MluCI AATT 3 cut(s) 101, 193, 259
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 6 cut(s) 66, 72, 135, 174, 249, 258
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 463
MspI CCGG 3 cut(s) 122, 298, 389
MspR9I CCNGG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 22, 235, 325, 334
NciI CCSGG 1 cut(s) 389
NdeII GATC 4 cut(s) 145, 274, 370, 476
NlaIII CATG 4 cut(s) 16, 245, 451, 484
NlaIV GGNNCC 1 cut(s) 478
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 2 cut(s) 16, 245
PaeI GCATGC 1 cut(s) 16
PagI TCATGA 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 417
PkrI GCNGC 2 cut(s) 32, 437
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 478
PsuI RGATCY 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 31, 436
Sau3AI GATC 4 cut(s) 145, 274, 370, 476
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 389
SetI ASST 4 cut(s) 250, 296, 318, 339
SfaNI GCATC 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SphI GCATGC 1 cut(s) 16
Sse9I AATT 3 cut(s) 101, 193, 259
SsiI CCGC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 66, 344
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 92, 99
TasI AATT 3 cut(s) 101, 193, 259
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 240, 538
TseI GCWGC 2 cut(s) 30, 435
TspDTI ATGAA 2 cut(s) 230, 447
TspGWI ACGGA 2 cut(s) 159, 453
TspRI CASTG 2 cut(s) 240, 538
XceI RCATGY 2 cut(s) 16, 245
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.