pycom15g04830

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012514
Physical Location & Seq
Forward (+)
2878997 .. 2880327
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 759 bp
ATGGCTCCCAGCGAGTCGGCCTCCGCCACCGAAACCCCAAAACCTCTGGCACCAAGCTTTGGAATGCTACTTTCTTCCACCAACTTCGCACCATTTCTCAGAGCATCACCGTCGTCGTCATCCTCCAAGAAGCCCCATTTTGTTCTTCCCGACATTCAAGCTTCGATTGCATCCGCCGCCGATAAGTGCTCCCAATTGCTTCACTCTCTGGTTACTCAAAACCCGCTTCTCAGCAAGCTAATCTCTTTGCGCTGCGAATTTCAAAGTATCTGCCACCAGATTGGGGGCATGAAGAACAAGCAGGTGAAGGCTTTATCAGCTCACAATTTTGCAGCGGTTTTGCCGGGAGATTCAGTGGCGGGGCTTGTGGTGGCAAACGGCATCTCCAACTTCTTGAACTTGTACAACACTCTCTTGGTTGTTAGGCTTGTCCTCACCTGGTTCCCCAACTCCCCTCCTGCCATTGTTGGCCCCCTCAGCACAATATGTGATCCGTACTTGAACATATTTCGGGGGTTAATCCCCCCACTTGGAGGCTCATTGGATCTCTCTCCCATTCTGGCATTCTTGGTTTTGAATGCCTTTACAAGCACAGCTGCTGCATTACCTGCAGAGCTTCCAGCATCACCGTCGTCAGTAGCTTCCCAAGAACTCACGGCTTCTCCTACCGGAATCGCTAATCTCTCTATATGTCAAAAGAAATGGATGACGAGGCTTCAGGGCCACAACAGCACAAAGAGCTCGGGCGGTGTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

253

Amino Acids

26.35

Weight (kDa)

9.22

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 131 - 195 3.4e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 2 cut(s) 292, 616
AccB1I GGYRCC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 7 cut(s) 24, 174, 177, 224, 335, 359, 747
AclWI GGATC 2 cut(s) 485, 552
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 2 cut(s) 404, 497
AfiI CCNNNNNNNGG 4 cut(s) 59, 283, 530, 533
AgsI TTSAA 5 cut(s) 158, 263, 397, 502, 577
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 8 cut(s) 57, 161, 238, 320, 596, 616, 641, 741
AluI AGCT 8 cut(s) 57, 161, 238, 320, 596, 616, 641, 741
Alw21I GWGCWC 2 cut(s) 191, 743
AlwI GGATC 2 cut(s) 485, 552
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 3 cut(s) 18, 469, 721
ApeKI GCWGC 4 cut(s) 252, 332, 596, 599
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 470, 721
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 99, 316, 427, 618
AvaI CYCGRG 1 cut(s) 742
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 743
Bbv12I GWGCWC 2 cut(s) 191, 743
BbvCI CCTCAGC 1 cut(s) 476
BbvI GCAGC 4 cut(s) 239, 344, 583, 586
BceAI ACGGC 2 cut(s) 394, 672
BcgI CGANNNNNNTGC 4 cut(s) 93, 127, 612, 646
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 609
BfuAI ACCTGC 2 cut(s) 292, 616
BisI GCNGC 5 cut(s) 177, 253, 333, 597, 600
BlsI GCNGC 5 cut(s) 178, 254, 334, 598, 601
Bme1390I CCNGG 2 cut(s) 345, 439
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 470, 721
BmiI GGNNCC 4 cut(s) 6, 51, 443, 472
BmrFI CCNGG 2 cut(s) 345, 439
BmsI GCATC 4 cut(s) 113, 179, 390, 632
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 668
BsaXI ACNNNNNCTCC 6 cut(s) 339, 368, 369, 398, 646, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 283, 530, 533
BseBI CCWGG 1 cut(s) 439
BseGI GGATG 3 cut(s) 119, 170, 711
BseLI CCNNNNNNNGG 4 cut(s) 59, 283, 530, 533
BseMII CTCAG 3 cut(s) 112, 244, 490
BseXI GCAGC 4 cut(s) 239, 344, 583, 586
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 3 cut(s) 20, 471, 723
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 191, 743
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 2 cut(s) 344, 669
BslI CCNNNNNNNGG 4 cut(s) 59, 283, 530, 533
BsmI GAATGC 3 cut(s) 69, 563, 583
BsnI GGCC 3 cut(s) 20, 471, 723
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 191, 743
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 2 cut(s) 490, 544
BspACI CCGC 7 cut(s) 24, 174, 177, 224, 335, 359, 747
BspANI GGCC 3 cut(s) 20, 471, 723
BspCNI CTCAG 3 cut(s) 111, 243, 489
BspLI GGNNCC 4 cut(s) 6, 51, 443, 472
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 2 cut(s) 292, 616
BspPI GGATC 2 cut(s) 485, 552
BspT107I GGYRCC 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 402
BssMI GATC 2 cut(s) 490, 544
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 111, 630
BstAPI GCANNNNNTGC 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 98, 230, 476
BstF5I GGATG 3 cut(s) 119, 170, 711
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 493, 547
BstMBI GATC 2 cut(s) 490, 544
BstMWI GCNNNNNNNGC 7 cut(s) 167, 176, 317, 477, 608, 729, 738
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 343, 437
BstSFI CTRYAG 1 cut(s) 609
BstV1I GCAGC 4 cut(s) 239, 344, 583, 586
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 3 cut(s) 20, 471, 723
BtsCI GGATG 3 cut(s) 119, 170, 711
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 2 cut(s) 292, 616
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 470, 721
CsiI ACCWGGT 1 cut(s) 437
Csp6I GTAC 2 cut(s) 403, 496
CviAII CATG 1 cut(s) 289
CviQI GTAC 2 cut(s) 403, 496
DdeI CTNAG 3 cut(s) 98, 230, 476
DpnI GATC 2 cut(s) 492, 546
DpnII GATC 2 cut(s) 490, 544
EciI GGCGGA 2 cut(s) 13, 163
Ecl136II GAGCTC 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 741
EcoRII CCWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 743
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 290, 487, 506, 689, 691
FatI CATG 1 cut(s) 288
FauI CCCGC 2 cut(s) 231, 352
Fnu4HI GCNGC 5 cut(s) 177, 253, 333, 597, 600
FokI GGATG 3 cut(s) 106, 157, 718
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 5 cut(s) 177, 253, 333, 597, 600
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 177, 253, 333, 597, 600
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 3 cut(s) 20, 471, 723
HapII CCGG 2 cut(s) 344, 669
HhaI GCGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HindIII AAGCTT 2 cut(s) 55, 159
HinfI GANTC 3 cut(s) 14, 350, 672
HpaII CCGG 2 cut(s) 344, 669
HphI GGTGA 4 cut(s) 99, 316, 427, 618
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 149, 394
Hpy99I CGWCG 3 cut(s) 115, 118, 634
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 111, 630
HpyCH4V TGCA 4 cut(s) 170, 332, 602, 611
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 176, 317, 477, 608, 729, 738
HpyF3I CTNAG 3 cut(s) 98, 230, 476
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 490, 544
LmnI GCTCC 2 cut(s) 10, 194
Lsp1109I GCAGC 4 cut(s) 239, 344, 583, 586
LweI GCATC 4 cut(s) 113, 179, 390, 632
MabI ACCWGGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 492, 546
MboI GATC 2 cut(s) 490, 544
MboII GAAGA 3 cut(s) 66, 137, 304
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 191, 743
MluCI AATT 4 cut(s) 194, 257, 325, 754
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 8 cut(s) 31, 54, 133, 443, 465, 485, 527, 705
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 2 cut(s) 335, 596
MspI CCGG 2 cut(s) 344, 669
MspR9I CCNGG 2 cut(s) 345, 439
MunI CAATTG 1 cut(s) 194
Mva1269I GAATGC 3 cut(s) 69, 563, 583
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 7 cut(s) 167, 176, 317, 477, 608, 729, 738
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 490, 544
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 4 cut(s) 6, 51, 443, 472
PaqCI CACCTGC 1 cut(s) 292
PctI GAATGC 3 cut(s) 69, 563, 583
PfeI GAWTC 2 cut(s) 350, 672
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 5 cut(s) 178, 254, 334, 598, 601
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 4 cut(s) 6, 51, 443, 472
PspPI GGNCC 2 cut(s) 470, 721
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 2 cut(s) 404, 497
RsaNI GTAC 2 cut(s) 403, 496
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 5 cut(s) 177, 253, 333, 597, 600
Sau3AI GATC 2 cut(s) 490, 544
Sau96I GGNCC 2 cut(s) 470, 721
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 345, 439
SduI GDGCHC 2 cut(s) 191, 743
SexAI ACCWGGT 1 cut(s) 437
SfaNI GCATC 4 cut(s) 113, 179, 390, 632
SfcI CTRYAG 1 cut(s) 609
Sse9I AATT 4 cut(s) 194, 257, 325, 754
SsiI CCGC 7 cut(s) 24, 174, 177, 224, 335, 359, 747
SstI GAGCTC 1 cut(s) 743
StyD4I CCNGG 2 cut(s) 343, 437
TaaI ACNGT 2 cut(s) 111, 630
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 194, 257, 325, 754
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 350, 672
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 360
TseI GCWGC 4 cut(s) 252, 332, 596, 599
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.