Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011445

Physical Location & Seq

Genomic Coordinates Reverse (-)

3121075 .. 3122688

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGTCGATATACGTGTTGGAACCGCCGACGAAGGGGAAGGTGGTGCTGCAAACGACGCACGGGCCGCTGGACGTGGAGCTCTGGCCCAAAGAGGCCCCGAAGGCTGTCAAGAACTTCGTCCAGCTCTGCCTCGAAGGATACTACGACAACACCATCTTCCACCGCATCATCAAAGGCTTTCTGATTCAGGGCGGCGACCCCACCGGCACCGGCACAGGGGGTGAGAGTATTTACGGTGGTGTGTTTCCTGATGAGTTTCATTCGCGTTTGAGATTCAAGCATAGGGGTTTAGTTGCTTGTGCAAATGCCGGTACACCCAATTCGAATGGGAGCCAGTTTTTCATGAACTTGGATCGGAGTGATTGGCTTGACAAGAAGCATACCATCTTCGGAAAGGTGACTGGGGATTCAATCTATAATCTTGTGCGGTTGGGTGAACTCGAAACTGACAAGGAGGATAGGCCTTTGGACCCACCCCCAAGGATACTATCAGTGTTATGGAATCCCTTTGATGATATTGTTCCAAGGGTACGTGCAAAGCCTTCGAAGGAATCCATAAATGATACTGACAACAAAGACACAAAGAAGAAAGCTGTAAAAAAGCTGAACTTGCTTTCATTTGGAGAAGAAGCTGAAGAAGAGGAGAGAGAGTTGGCAGCTGTAAAGACCAAAATCAAGAGCAGCCACGATGTATTGGATGATCCTCGTCTTCTGAAGGACGAAGTTCCATTTAATGAATCGAACATTGATGCCAAAACAAGGCATGTACAGTTATCTGTCAGAGAAGCTCTAAGCTCCAAGAAAGACTCAGAGTCCAAATTTTATAATACCCTTGATCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055044 GO:0071012 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

283

Amino Acids

31.74

Weight (kDa)

6.41

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	15 - 165	3.2e-46	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33060
fragaria_vesca	FvH4_2g31480 FvH4_2g31480 FvH4_2g31480 FvH4_2g31480
malus_domestica	MD08G1066000.v1.1 MD15G1055400.v1.1
prunus_persica	Prupe.1G408500_v2.0.a1
pyrus_communis	pycom15g05220
rosa_chinensis	RchiOBHm_Chr6g0311311
rosa_laevigata	RLG00000010418
rosa_multiflora	Rmu_sc0008536.1_g000004 Rmu_sc0030204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157770
rosa_rugosa	Rorug06G0387100
rosa_samantha	Rh6AG502000 Rh6BG512700 Rh6CG518400 Rh6DG504600
rosa_wichuraiana	Rw6G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	1 cut(s)	268
AciI	CCGC	5 cut(s)	26, 68, 166, 195, 430
AclWI	GGATC	2 cut(s)	363, 698
AcsI	RAATTY	1 cut(s)	821
AcuI	CTGAAG	2 cut(s)	657, 737
AfaI	GTAC	3 cut(s)	316, 534, 771
AfiI	CCNNNNNNNGG	3 cut(s)	35, 219, 762
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	280, 414
AhdI	GACNNNNNGTC	1 cut(s)	814
AjiI	CACGTC	1 cut(s)	76
AluBI	AGCT	8 cut(s)	82, 127, 596, 607, 635, 662, 791, 798
AluI	AGCT	8 cut(s)	82, 127, 596, 607, 635, 662, 791, 798
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	363, 698
AoxI	GGCC	4 cut(s)	65, 86, 96, 464
ApeKI	GCWGC	3 cut(s)	49, 659, 684
ApoI	RAATTY	1 cut(s)	821
AspS9I	GGNCC	4 cut(s)	65, 87, 97, 472
AsuHPI	GGTGA	3 cut(s)	236, 412, 449
AsuII	TTCGAA	2 cut(s)	326, 548
AvaII	GGWCC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	36, 671, 696
BccI	CCATC	2 cut(s)	164, 395
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciVI	GTATCC	2 cut(s)	134, 480
BfuI	GTATCC	2 cut(s)	134, 480
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	5 cut(s)	50, 68, 196, 660, 685
BlsI	GCNGC	5 cut(s)	51, 69, 197, 661, 686
Bme18I	GGWCC	1 cut(s)	472
BmeRI	GACNNNNNGTC	1 cut(s)	814
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	4 cut(s)	65, 87, 97, 472
BmiI	GGNNCC	5 cut(s)	24, 99, 211, 335, 474
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	177, 742
BmuI	ACTGGG	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	704
Bpu14I	TTCGAA	2 cut(s)	326, 548
Bsa29I	ATCGAT	1 cut(s)	841
BsaAI	YACGTR	2 cut(s)	16, 536
BsaJI	CCNNGG	2 cut(s)	482, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 219, 762
Bse118I	RCCGGY	3 cut(s)	206, 212, 311
Bse1I	ACTGG	2 cut(s)	337, 409
BseCI	ATCGAT	1 cut(s)	841
BseDI	CCNNGG	2 cut(s)	482, 527
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	3 cut(s)	35, 219, 762
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	2 cut(s)	337, 409
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	36, 671, 696
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	67, 88, 98, 466
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	207, 213, 312
BslI	CCNNNNNNNGG	3 cut(s)	35, 219, 762
BsnI	GGCC	4 cut(s)	67, 88, 98, 466
Bsp119I	TTCGAA	2 cut(s)	326, 548
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	4 cut(s)	355, 703, 838, 842
BspACI	CCGC	5 cut(s)	26, 68, 166, 195, 430
BspANI	GGCC	4 cut(s)	67, 88, 98, 466
BspCNI	CTCAG	1 cut(s)	824
BspDI	ATCGAT	1 cut(s)	841
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	5 cut(s)	24, 99, 211, 335, 474
BspPI	GGATC	2 cut(s)	363, 698
BspT104I	TTCGAA	2 cut(s)	326, 548
BspT107I	GGYRCC	1 cut(s)	209
BsrFI	RCCGGY	3 cut(s)	206, 212, 311
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	337, 409
BssAI	RCCGGY	3 cut(s)	206, 212, 311
BssECI	CCNNGG	2 cut(s)	482, 527
BssMI	GATC	4 cut(s)	355, 703, 838, 842
BssT1I	CCWWGG	2 cut(s)	482, 527
Bst4CI	ACNGT	2 cut(s)	239, 774
Bst6I	CTCTTC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	769
BstBAI	YACGTR	2 cut(s)	16, 536
BstBI	TTCGAA	2 cut(s)	326, 548
BstDEI	CTNAG	3 cut(s)	794, 811, 846
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	358, 706, 841, 845
BstMBI	GATC	4 cut(s)	355, 703, 838, 842
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 67, 104, 613
BstNSI	RCATGY	1 cut(s)	770
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	36, 671, 696
BstV2I	GAAGAC	1 cut(s)	704
Bsu15I	ATCGAT	1 cut(s)	841
BsuI	GTATCC	2 cut(s)	134, 480
BsuRI	GGCC	4 cut(s)	67, 88, 98, 466
BsuTUI	ATCGAT	1 cut(s)	841
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	501
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	3 cut(s)	206, 212, 311
Cfr13I	GGNCC	4 cut(s)	65, 87, 97, 472
ClaI	ATCGAT	1 cut(s)	841
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	315, 533, 770
CviAII	CATG	2 cut(s)	346, 767
CviQI	GTAC	3 cut(s)	315, 533, 770
DdeI	CTNAG	3 cut(s)	794, 811, 846
DpnI	GATC	4 cut(s)	357, 705, 840, 844
DpnII	GATC	4 cut(s)	355, 703, 838, 842
DriI	GACNNNNNGTC	1 cut(s)	814
Eam1104I	CTCTTC	1 cut(s)	636
Eam1105I	GACNNNNNGTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	482, 527
Eco147I	AGGCCT	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	657, 737
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	482, 527
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	482, 527
FaeI	CATG	2 cut(s)	349, 770
FaiI	YATR	9 cut(s)	13, 285, 347, 384, 420, 502, 560, 768, 828
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	2 cut(s)	345, 766
Fnu4HI	GCNGC	5 cut(s)	50, 68, 196, 660, 685
FokI	GGATG	1 cut(s)	713
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	5 cut(s)	50, 68, 196, 660, 685
GluI	GCNGC	5 cut(s)	50, 68, 196, 660, 685
HaeIII	GGCC	4 cut(s)	67, 88, 98, 466
HapII	CCGG	3 cut(s)	207, 213, 312
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	349, 770
HinfI	GANTC	8 cut(s)	187, 276, 410, 505, 554, 740, 809, 815
HpaII	CCGG	3 cut(s)	207, 213, 312
HphI	GGTGA	3 cut(s)	236, 412, 449
Hpy166II	GTNNAC	2 cut(s)	317, 440
Hpy188I	TCNGA	6 cut(s)	186, 360, 395, 717, 785, 814
Hpy188III	TCNNGA	4 cut(s)	112, 251, 346, 679
Hpy8I	GTNNAC	2 cut(s)	317, 440
Hpy99I	CGWCG	3 cut(s)	10, 34, 61
HpyAV	CCTTC	7 cut(s)	28, 34, 97, 131, 544, 555, 712
HpyCH4III	ACNGT	2 cut(s)	239, 774
HpyCH4IV	ACGT	3 cut(s)	15, 75, 535
HpyCH4V	TGCA	3 cut(s)	52, 305, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 67, 104, 613
HpyF3I	CTNAG	3 cut(s)	794, 811, 846
HpySE526I	ACGT	3 cut(s)	15, 75, 535
Hsp92II	CATG	2 cut(s)	349, 770
Kzo9I	GATC	4 cut(s)	355, 703, 838, 842
LmnI	GCTCC	3 cut(s)	79, 333, 803
Lsp1109I	GCAGC	3 cut(s)	36, 671, 696
LweI	GCATC	2 cut(s)	177, 742
MaeII	ACGT	3 cut(s)	15, 75, 535
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	4 cut(s)	357, 705, 840, 844
MboI	GATC	4 cut(s)	355, 703, 838, 842
MboII	GAAGA	7 cut(s)	151, 382, 601, 641, 650, 653, 704
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	2 cut(s)	322, 821
MlyI	GAGTC	2 cut(s)	803, 824
MnlI	CCTC	5 cut(s)	88, 143, 451, 637, 717
MseI	TTAA	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	70, 662
MspI	CCGG	3 cut(s)	207, 213, 312
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	58, 67, 104, 613
NdeII	GATC	4 cut(s)	355, 703, 838, 842
NlaIII	CATG	2 cut(s)	349, 770
NlaIV	GGNNCC	5 cut(s)	24, 99, 211, 335, 474
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	770
NspV	TTCGAA	2 cut(s)	326, 548
PagI	TCATGA	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	466
PfeI	GAWTC	6 cut(s)	187, 276, 410, 505, 554, 740
PkrI	GCNGC	5 cut(s)	51, 69, 197, 661, 686
PleI	GAGTC	2 cut(s)	803, 823
PpsI	GAGTC	2 cut(s)	803, 823
Ppu21I	YACGTR	2 cut(s)	16, 536
PsiI	TTATAA	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	5 cut(s)	24, 99, 211, 335, 474
PspPI	GGNCC	4 cut(s)	65, 87, 97, 472
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	3 cut(s)	316, 534, 771
RsaNI	GTAC	3 cut(s)	315, 533, 770
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	5 cut(s)	50, 68, 196, 660, 685
Sau3AI	GATC	4 cut(s)	355, 703, 838, 842
Sau96I	GGNCC	4 cut(s)	65, 87, 97, 472
SchI	GAGTC	2 cut(s)	803, 824
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	177, 742
SfuI	TTCGAA	2 cut(s)	326, 548
SinI	GGWCC	1 cut(s)	472
Sse9I	AATT	2 cut(s)	322, 821
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	5 cut(s)	26, 68, 166, 195, 430
SstI	GAGCTC	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	482, 527
TaaI	ACNGT	2 cut(s)	239, 774
TaiI	ACGT	3 cut(s)	18, 78, 538
TaqI	TCGA	7 cut(s)	8, 135, 326, 444, 548, 743, 841
TasI	AATT	2 cut(s)	322, 821
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	2 cut(s)	70, 198
TfiI	GAWTC	6 cut(s)	187, 276, 410, 505, 554, 740
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	49, 659, 684
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	251, 334, 362, 609, 753
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.