pycom15g05330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016765
Physical Location & Seq
Forward (+)
3194383 .. 3195147
765 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGGAAGAATAATTCCCACGGATGAGACGAATCTGCTAATCCATCCGTTGCTATCTTTGTCTTTCTTTGCCGCTGCCATGGCCGCCACCATTGCCATAATCACGTCTCTTTGTAGTTTTCGGAGAAAATCTTCTTCGTCCTCTTCTGAGTCCCCTGCTCACAAGGAAGCAGAGGAATCCGATGTTGGCAAGGCGCAAACATCGGAAGCAGCATTGGGGGAAACAGGGAACAAAACATCTCAACAAGACACGGAAACAGATGGAGGAAATGATGATTCGAGAATGAGTAAAGAGCTGCCCTTGCCTCCAAGGATGAAGAACTCGGGACAGCTTTATTCCGGCAACCTTGACACGAAAACTCAGATGAAAAAGTCCGCTTCCGAGCGAAGGCTACTGTCGAATTTGAGCCTTAAATTGCCACGAAGCCTGTCGATGGCACGAAAAGACAAGGTTAAGGAAGAGTACAACAAGCGAAAGAACGGAAAGTTGAAGCCGGAAGACTCGGTCTGGATGAAGACGATCATACTAGGTGAGAAATGTAAAGTGCCTGATGAGGATGAAGCTGTGATTTATGATGCCAAGGGGAGGAGGATTCCGGCTTATCACCCGAGAAGTCGGCAATCCTCCTTCATTGATCCGAACGCATTACTTGACCAAAATATGAAGAGAGTAGAATTAGAAAACAAAATTAATCAAGAGACAGAGCACAAACAAGAAAACAAAAATCAAGAAAGTGATCAAGAAAATAATCATGACGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.49

Weight (kDa)

6.98

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 84, 375
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 387, 433, 585
AgsI TTSAA 1 cut(s) 490
AjiI CACGTC 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 295, 331, 563
AluI AGCT 3 cut(s) 295, 331, 563
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 3 cut(s) 20, 111, 692
AlwI GGATC 1 cut(s) 629
Ama87I CYCGRG 2 cut(s) 322, 607
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 74, 209, 295
ApoI RAATTY 1 cut(s) 400
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 542, 596
AvaI CYCGRG 2 cut(s) 322, 607
BbsI GAAGAC 2 cut(s) 504, 521
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 61, 221, 282
BccI CCATC 3 cut(s) 51, 254, 427
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 3 cut(s) 20, 111, 692
BfaI CTAG 1 cut(s) 527
BisI GCNGC 5 cut(s) 72, 75, 84, 210, 296
BlsI GCNGC 5 cut(s) 73, 76, 85, 211, 297
BmeT110I CYCGRG 2 cut(s) 322, 607
BmgBI CACGTC 1 cut(s) 105
BmsI GCATC 1 cut(s) 565
BpiI GAAGAC 2 cut(s) 504, 521
BsaJI CCNNGG 4 cut(s) 18, 78, 308, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 387, 433, 585
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 4 cut(s) 18, 78, 308, 579
BseGI GGATG 5 cut(s) 28, 43, 318, 516, 562
BseLI CCNNNNNNNGG 3 cut(s) 387, 433, 585
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 138, 374
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 3 cut(s) 61, 221, 282
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 2 cut(s) 322, 607
BsiSI CCGG 3 cut(s) 339, 494, 596
BslFI GGGAC 2 cut(s) 136, 339
BslI CCNNNNNNNGG 3 cut(s) 387, 433, 585
BsmAI GTCTC 3 cut(s) 20, 111, 692
BsmBI CGTCTC 2 cut(s) 20, 111
BsmFI GGGAC 2 cut(s) 136, 339
BsnI GGCC 1 cut(s) 83
BsoBI CYCGRG 2 cut(s) 322, 607
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 3 cut(s) 519, 634, 736
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 3 cut(s) 72, 84, 375
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 139, 373
BspHI TCATGA 1 cut(s) 751
BspPI GGATC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 4 cut(s) 18, 78, 308, 579
BssMI GATC 3 cut(s) 519, 634, 736
BssT1I CCWWGG 3 cut(s) 78, 308, 579
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 3 cut(s) 148, 453, 659
BstDEI CTNAG 2 cut(s) 147, 360
BstDSI CCRYGG 2 cut(s) 18, 78
BstF5I GGATG 5 cut(s) 28, 43, 318, 516, 562
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 522, 637, 739
BstMAI GTCTC 3 cut(s) 20, 111, 692
BstMBI GATC 3 cut(s) 519, 634, 736
BstMWI GCNNNNNNNGC 4 cut(s) 80, 83, 92, 301
BstV1I GCAGC 3 cut(s) 61, 221, 282
BstV2I GAAGAC 2 cut(s) 504, 521
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 18, 78
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 5 cut(s) 28, 43, 318, 516, 562
CciI TCATGA 1 cut(s) 751
CfoI GCGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 463
CviAII CATG 2 cut(s) 79, 752
CviJI RGCY 9 cut(s) 83, 295, 331, 391, 408, 426, 493, 563, 599
CviKI_1 RGCY 9 cut(s) 83, 295, 331, 391, 408, 426, 493, 563, 599
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 147, 360
DpnI GATC 3 cut(s) 521, 636, 738
DpnII GATC 3 cut(s) 519, 634, 736
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 148, 453, 659
EarI CTCTTC 3 cut(s) 148, 453, 659
Eco130I CCWWGG 3 cut(s) 78, 308, 579
Eco88I CYCGRG 2 cut(s) 322, 607
EcoT14I CCWWGG 3 cut(s) 78, 308, 579
ErhI CCWWGG 3 cut(s) 78, 308, 579
Esp3I CGTCTC 2 cut(s) 20, 111
FaeI CATG 2 cut(s) 82, 755
FaiI YATR 6 cut(s) 80, 98, 524, 573, 662, 753
FaqI GGGAC 2 cut(s) 136, 339
FatI CATG 2 cut(s) 78, 751
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 5 cut(s) 72, 75, 84, 210, 296
FokI GGATG 5 cut(s) 30, 35, 325, 523, 569
Fsp4HI GCNGC 5 cut(s) 72, 75, 84, 210, 296
FspBI CTAG 1 cut(s) 527
GlaI GCGC 1 cut(s) 195
GluI GCNGC 5 cut(s) 72, 75, 84, 210, 296
HaeIII GGCC 1 cut(s) 83
HapII CCGG 3 cut(s) 339, 494, 596
HhaI GCGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 82, 755
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 6 cut(s) 31, 149, 176, 275, 500, 592
HpaII CCGG 3 cut(s) 339, 494, 596
HphI GGTGA 2 cut(s) 542, 596
Hpy188I TCNGA 7 cut(s) 123, 148, 181, 205, 363, 382, 639
Hpy188III TCNNGA 7 cut(s) 279, 324, 508, 695, 728, 740, 752
HpyAV CCTTC 2 cut(s) 381, 637
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 83, 92, 301
HpyF3I CTNAG 2 cut(s) 147, 360
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 82, 755
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 3 cut(s) 519, 634, 736
LpnPI CCDG 8 cut(s) 168, 210, 352, 440, 493, 507, 561, 609
Lsp1109I GCAGC 3 cut(s) 61, 221, 282
LweI GCATC 1 cut(s) 565
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 104
MalI GATC 3 cut(s) 521, 636, 738
MboI GATC 3 cut(s) 519, 634, 736
MboII GAAGA 9 cut(s) 18, 123, 126, 135, 328, 470, 509, 526, 676
MhlI GDGCHC 1 cut(s) 708
MluCI AATT 6 cut(s) 12, 400, 413, 674, 687, 760
MlyI GAGTC 2 cut(s) 158, 494
MnlI CCTC 8 cut(s) 151, 166, 257, 315, 547, 579, 582, 634
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 4 cut(s) 411, 453, 690, 763
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 339, 494, 596
MwoI GCNNNNNNNGC 4 cut(s) 80, 83, 92, 301
NcoI CCATGG 1 cut(s) 78
NdeII GATC 3 cut(s) 519, 634, 736
NlaIII CATG 2 cut(s) 82, 755
PagI TCATGA 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 31, 176, 275, 592
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 5 cut(s) 73, 76, 85, 211, 297
PleI GAGTC 2 cut(s) 157, 494
PpsI GAGTC 2 cut(s) 157, 494
PshBI ATTAAT 1 cut(s) 690
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 4 cut(s) 411, 453, 690, 763
SatI GCNGC 5 cut(s) 72, 75, 84, 210, 296
Sau3AI GATC 3 cut(s) 519, 634, 736
SchI GAGTC 2 cut(s) 158, 494
SduI GDGCHC 1 cut(s) 708
SetI ASST 7 cut(s) 107, 297, 333, 348, 453, 532, 565
SfaNI GCATC 1 cut(s) 565
Sse9I AATT 6 cut(s) 12, 400, 413, 674, 687, 760
SsiI CCGC 3 cut(s) 72, 84, 375
SspMI CTAG 1 cut(s) 527
StyI CCWWGG 3 cut(s) 78, 308, 579
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 278, 398, 431
TaqII GACCGA 1 cut(s) 493
TasI AATT 6 cut(s) 12, 400, 413, 674, 687, 760
TatI WGTACW 1 cut(s) 462
TauI GCSGC 2 cut(s) 74, 86
TfiI GAWTC 4 cut(s) 31, 176, 275, 592
Tru1I TTAA 4 cut(s) 411, 453, 690, 763
Tru9I TTAA 4 cut(s) 411, 453, 690, 763
TseI GCWGC 3 cut(s) 74, 209, 295
TspDTI ATGAA 6 cut(s) 329, 380, 527, 573, 619, 677
TspGWI ACGGA 4 cut(s) 35, 36, 266, 495
Tth111I GACNNNGTC 1 cut(s) 503
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.