pycom15g05460

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009657
Physical Location & Seq
Forward (+)
3258619 .. 3260826
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1341 bp
ATGATGAATAAAGGTTTGATGGTGGATGAGAATATGTCAAATCTGACTTGTGCCTCTGGTGATTTAAGTGCTTCTAACTCAAGCATCAGAAATGAGTCATCATCTGCTGGCACAGTCTACCCTCATCCCCCATCCTCAGCACAAATTCAGCAGCAGCAAGCACCGCCACCGCCAAAGAAGAAGAGAAATCTCCCAGGCAACCCAGACCCGGATGCTGAAGTAATAGCCTTGTCTCCAAAATCACTGATGGCAACGAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGGACGGGCAAGGAGGTGAGGAAGAAGGTGTATCTGTGCCCGGAACCAACATGTGTCCACCATGACCCATCAAGGGCTCTTGGGGACTTGACTGGGATCAAGAAGCACTTCTCTAGAAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAATGCTCAAAGCGGTATGCAGTTCAGTCGGACTGGAAAGCTCACTCCAAAGTCTGTGGCACAAGGGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGAGGGACAGTTTCATCACACACAGAGCCTTTTGTGATGCTTTAGCACAAGAGAACAATACAAGCTCTGCAGCTGCCAGATCGGTAATGCCAGCCTCAATAAACCCACTTCTCTCCTCACTCCCCCAACTCCATAGCCATGGCCTCCAAGCTCAATCAGCTGTCAAGAGAGAACAGGATCAGCATCAGCAGCAGCTCCTTCCTCCGTGGCTTTCATTCTTGCCAGAAGGCGGCGAAGCGGCCAGCCTCCCTACTATGAACCTCTCCGCCTCGCCATTATTCTCCACTTCTTCATTCCAGCAATATTATTCTTTTGGCCAAAACCCTAACCCTAGCAGCTCTTCTACTGCCCTACTCCCTGATAACTTCCAACTTCAACAAAACACCGCTTCCCCTCACATGTCAGCCACTGCCTTGCTTCAGAAGGCATCGGAAATGGGTGCGACCATCAGCAAATCCTCCCCTTCCCCATATTTTCTCAAACCACCCACCCACCAATCCCACCAAGCTCACCAAGCTCACATTTCCAACGAAACTTCGCGTGACCAAGCAATACTATTGGATGATGGATTTGGAAACAATGAGAGTAAATCTTCACTCTTCCATGATATGATGATGATGAGTAGCTCTCATGGTTTTGGTCATGATCGATCATCAAGTCTCGTCGTCGTCGTTTGGAGATCATCATCATCAGCAGCAGCAGCAGCAGCAGGCTTTCAATGGAATTATGGTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

447

Amino Acids

49.19

Weight (kDa)

9.36

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 125 - 159 4.8e-23 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 163 - 187 1.2e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 190 - 225 5.3e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 117, 1333
AccII CGCG 1 cut(s) 1141
AciI CCGC 7 cut(s) 164, 170, 514, 831, 839, 867, 987
AclWI GGATC 2 cut(s) 458, 786
AcoI YGGCCR 2 cut(s) 840, 916
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 3 cut(s) 237, 293, 1004
AfiI CCNNNNNNNGG 3 cut(s) 208, 427, 830
AflIII ACRYGT 2 cut(s) 404, 999
AgsI TTSAA 3 cut(s) 293, 977, 1319
AjnI CCWGG 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 237, 1265
AlwI GGATC 2 cut(s) 458, 786
AlwNI CAGNNNCTG 1 cut(s) 1010
AoxI GGCC 3 cut(s) 742, 840, 916
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 2 cut(s) 260, 461
AsuC2I CCSGG 2 cut(s) 209, 395
AsuHPI GGTGA 4 cut(s) 71, 382, 491, 1103
BaeGI GKGCMC 2 cut(s) 330, 395
BalI TGGCCA 1 cut(s) 918
BanII GRGCYC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 136
BccI CCATC 6 cut(s) 13, 139, 241, 430, 1055, 1160
BcgI CGANNNNNNTGC 2 cut(s) 510, 544
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 2 cut(s) 209, 395
BcoDI GTCTC 2 cut(s) 237, 1265
BfaI CTAG 3 cut(s) 468, 600, 933
BfmI CTRYAG 1 cut(s) 669
BglII AGATCT 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 195, 209, 395
BmiI GGNNCC 2 cut(s) 399, 589
BmrFI CCNGG 3 cut(s) 195, 209, 395
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 5 cut(s) 93, 202, 628, 793, 1037
BmuI ACTGGG 1 cut(s) 456
BplI GAGNNNNNCTC 4 cut(s) 491, 523, 1213, 1245
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 209, 395
Bsa29I ATCGAT 1 cut(s) 1249
BsaBI GATNNNNATC 2 cut(s) 783, 1285
BsaJI CCNNGG 4 cut(s) 193, 338, 739, 806
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 427, 830
Bse1I ACTGG 2 cut(s) 451, 539
Bse8I GATNNNNATC 2 cut(s) 783, 1285
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 1249
BseDI CCNNGG 4 cut(s) 193, 338, 739, 806
BseGI GGATG 5 cut(s) 31, 124, 131, 217, 1168
BseJI GATNNNNATC 2 cut(s) 783, 1285
BseLI CCNNNNNNNGG 3 cut(s) 208, 427, 830
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 451, 539
BseRI GAGGAG 1 cut(s) 706
BseSI GKGCMC 2 cut(s) 330, 395
Bsh1236I CGCG 1 cut(s) 1141
BshFI GGCC 3 cut(s) 744, 842, 918
BshVI ATCGAT 1 cut(s) 1249
BsiSI CCGG 2 cut(s) 209, 395
BslFI GGGAC 2 cut(s) 452, 620
BslI CCNNNNNNNGG 3 cut(s) 208, 427, 830
BsmAI GTCTC 2 cut(s) 237, 1265
BsmFI GGGAC 2 cut(s) 452, 620
BsnI GGCC 3 cut(s) 744, 842, 918
Bsp1286I GDGCHC 3 cut(s) 330, 395, 433
Bsp143I GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
Bsp19I CCATGG 2 cut(s) 338, 739
BspACI CCGC 7 cut(s) 164, 170, 514, 831, 839, 867, 987
BspANI GGCC 3 cut(s) 744, 842, 918
BspCNI CTCAG 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 1249
BspFNI CGCG 1 cut(s) 1141
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 2 cut(s) 399, 589
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 2 cut(s) 458, 786
BspQI GCTCTTC 1 cut(s) 946
BsrI ACTGG 2 cut(s) 451, 539
BssECI CCNNGG 4 cut(s) 193, 338, 739, 806
BssMI GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
BssT1I CCWWGG 2 cut(s) 338, 739
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 4 cut(s) 115, 479, 611, 1338
Bst6I CTCTTC 4 cut(s) 176, 316, 946, 1205
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 5 cut(s) 109, 159, 693, 844, 1312
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 3 cut(s) 338, 739, 806
BstF5I GGATG 5 cut(s) 31, 124, 131, 217, 1168
BstFNI CGCG 1 cut(s) 1141
BstKTI GATC 7 cut(s) 276, 453, 683, 781, 1249, 1253, 1283
BstMAI GTCTC 2 cut(s) 237, 1265
BstMBI GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
BstMWI GCNNNNNNNGC 9 cut(s) 163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 408, 1003
BstSCI CCNGG 3 cut(s) 193, 207, 393
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 2 cut(s) 330, 395
BstUI CGCG 1 cut(s) 1141
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 1249
BsuRI GGCC 3 cut(s) 744, 842, 918
BsuTUI ATCGAT 1 cut(s) 1249
BtgI CCRYGG 3 cut(s) 338, 739, 806
BtsCI GGATG 5 cut(s) 31, 124, 131, 217, 1168
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 2 cut(s) 242, 1008
Cac8I GCNNGC 5 cut(s) 109, 159, 693, 844, 1312
CaiI CAGNNNCTG 1 cut(s) 1010
CciI TCATGA 1 cut(s) 1243
ClaI ATCGAT 1 cut(s) 1249
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 8 cut(s) 339, 405, 416, 740, 1000, 1205, 1232, 1244
DdeI CTNAG 1 cut(s) 136
DpnI GATC 7 cut(s) 275, 452, 682, 780, 1248, 1252, 1282
DpnII GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
EaeI YGGCCR 2 cut(s) 840, 916
Eam1104I CTCTTC 4 cut(s) 176, 316, 946, 1205
EarI CTCTTC 4 cut(s) 176, 316, 946, 1205
EciI GGCGGA 1 cut(s) 856
Eco130I CCWWGG 2 cut(s) 338, 739
Eco24I GRGCYC 1 cut(s) 433
Eco57I CTGAAG 3 cut(s) 237, 293, 1004
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 338, 739
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 2 cut(s) 338, 739
FaeI CATG 8 cut(s) 342, 408, 419, 743, 1003, 1208, 1235, 1247
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 2 cut(s) 452, 620
FatI CATG 8 cut(s) 338, 404, 415, 739, 999, 1204, 1231, 1243
FblI GTMKAC 2 cut(s) 117, 1333
FokI GGATG 5 cut(s) 38, 111, 118, 224, 1175
FriOI GRGCYC 1 cut(s) 433
FspBI CTAG 3 cut(s) 468, 600, 933
HaeIII GGCC 3 cut(s) 744, 842, 918
HapII CCGG 2 cut(s) 209, 395
Hin1II CATG 8 cut(s) 342, 408, 419, 743, 1003, 1208, 1235, 1247
HincII GTYRAC 1 cut(s) 1334
HindII GTYRAC 1 cut(s) 1334
HinfI GANTC 2 cut(s) 95, 261
HpaII CCGG 2 cut(s) 209, 395
HphI GGTGA 4 cut(s) 71, 382, 491, 1103
Hpy166II GTNNAC 3 cut(s) 118, 412, 1334
Hpy188I TCNGA 5 cut(s) 45, 89, 532, 1023, 1033
Hpy188III TCNNGA 4 cut(s) 454, 468, 766, 1244
Hpy8I GTNNAC 3 cut(s) 118, 412, 1334
Hpy99I CGWCG 4 cut(s) 1268, 1271, 1274, 1338
HpyAV CCTTC 6 cut(s) 317, 373, 809, 821, 1018, 1074
HpyCH4III ACNGT 4 cut(s) 115, 479, 611, 1338
HpyCH4V TGCA 3 cut(s) 279, 521, 671
HpyF10VI GCNNNNNNNGC 9 cut(s) 163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 8 cut(s) 342, 408, 419, 743, 1003, 1208, 1235, 1247
Kzo9I GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
LguI GCTCTTC 1 cut(s) 946
LmnI GCTCC 1 cut(s) 801
LweI GCATC 5 cut(s) 93, 202, 628, 793, 1037
MaeI CTAG 3 cut(s) 468, 600, 933
MaeIII GTNAC 1 cut(s) 1142
MalI GATC 7 cut(s) 275, 452, 682, 780, 1248, 1252, 1282
MboI GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
MboII GAAGA 8 cut(s) 190, 193, 333, 388, 882, 933, 1185, 1192
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 3 cut(s) 330, 395, 433
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 2 cut(s) 144, 1324
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 3 cut(s) 510, 994, 1152
Mox20I TGGCCA 1 cut(s) 918
MroXI GAANNNNTTC 2 cut(s) 260, 461
MscI TGGCCA 1 cut(s) 918
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 738
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 674, 761
MspI CCGG 2 cut(s) 209, 395
MspR9I CCNGG 3 cut(s) 195, 209, 395
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 1141
MwoI GCNNNNNNNGC 9 cut(s) 163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
NciI CCSGG 2 cut(s) 209, 395
NcoI CCATGG 2 cut(s) 338, 739
NdeII GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
NlaIII CATG 8 cut(s) 342, 408, 419, 743, 1003, 1208, 1235, 1247
NlaIV GGNNCC 2 cut(s) 399, 589
NmuCI GTSAC 1 cut(s) 1142
NspI RCATGY 2 cut(s) 408, 1003
PagI TCATGA 1 cut(s) 1243
PciI ACATGT 2 cut(s) 404, 999
PciSI GCTCTTC 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 1269
PdmI GAANNNNTTC 2 cut(s) 260, 461
PfeI GAWTC 1 cut(s) 261
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 2 cut(s) 404, 999
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 399, 589
PstI CTGCAG 1 cut(s) 673
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 2 cut(s) 674, 761
RseI CAYNNNNRTG 1 cut(s) 738
SalI GTCGAC 1 cut(s) 1332
SapI GCTCTTC 1 cut(s) 946
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 7 cut(s) 273, 450, 680, 778, 1246, 1250, 1280
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 195, 209, 395
SduI GDGCHC 3 cut(s) 330, 395, 433
SfaNI GCATC 5 cut(s) 93, 202, 628, 793, 1037
SfcI CTRYAG 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 2 cut(s) 144, 1324
SsiI CCGC 7 cut(s) 164, 170, 514, 831, 839, 867, 987
SspI AATATT 1 cut(s) 905
SspMI CTAG 3 cut(s) 468, 600, 933
StyD4I CCNGG 3 cut(s) 193, 207, 393
StyI CCWWGG 2 cut(s) 338, 739
TaaI ACNGT 4 cut(s) 115, 479, 611, 1338
TaqI TCGA 2 cut(s) 1249, 1333
TasI AATT 2 cut(s) 144, 1324
TauI GCSGC 2 cut(s) 834, 842
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 2 cut(s) 249, 1015
TseFI GTSAC 1 cut(s) 1142
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 6 cut(s) 20, 305, 604, 804, 872, 882
TspGWI ACGGA 1 cut(s) 795
TspRI CASTG 2 cut(s) 249, 1015
XapI RAATTY 1 cut(s) 144
XbaI TCTAGA 1 cut(s) 467
XceI RCATGY 2 cut(s) 408, 1003
XmiI GTMKAC 2 cut(s) 117, 1333
XmnI GAANNNNTTC 2 cut(s) 260, 461
XspI CTAG 3 cut(s) 468, 600, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.