Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009577

Physical Location & Seq

Genomic Coordinates Forward (+)

3797510 .. 3804966

Gene Structure 7457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGAGCAACAAGGTCGAATGCTTCCCAGGCAACGTGCCCTTCGCATGGGAAAACAAGCCCGGCGTCTCCAAACTCTCACACAAACAGACGCACACAGAAAGGAAGTACTACTTGCCGCCACCACCTTGCCCTTATGAGCCTTCCCCCAAACTTTCTTTACACGACTTTCAGCTCCCTCTTCCTCCCTGCACGTTTCAGCAGCCGCTTTTGCGAAGCTCCTCCTCGAAGGCTCTCCGGGATGACCCTTTTCTGGTGGCCTTCCAAGAGTGCACCAAGCCCGGCCCCAAGGACAAGAGCAAGACGTCGTCCTTGTTACGTAAGTATGGTGTTCGATCTGGATTTGGGAGGTGGTTTGGGTTTGGTGACTTGTTGTGTAAGCGTTCGAGTAGTGCCCGAGTTGACCCGAACTATCCCGTATCTGCTCCGTTTCAAATGGAAAAGAAAATACATACGGGTGGTGGTCAACTCCGACCCGCCCGAGTGACCCGAACACCAACGGTCCAACACAGCGGTAATTGTAAACGATTAACTGTGGCTGCGTGTAAATCCCGCGAAAGTCAGGTTGGGTCCCATTGTGTATGCGCTGCAATGGCGAATAACCCTCAATCCTCAGCTACGCAGCCATTTCGGCCTCCCCCAGTTGCTCCCATGGGTCCTCAAAGTTTTGGTTCATCTCCTCTTCAATACCGACCAGTGGTTCCAACACAGCAAGGACAGCAATTTATTTCACCAGCTTCCCAACAATTTCAGCCCGTGGGACAAGGTATTCCTTCTCCAAATGTTGGGATGCCTGCTAGTCAAAGTCAGCAATTACAATATTCTCAACCAATGCAACCGTATCCTCTCAGGCCAAGTCAGCCTGGTCTTCCTCATTCATCACAGGCGTTGCCTATGCAATACATGCAGACGAGACCTATTACATCTATCCCATCACATTCTCAGCAACCTGTCCCACCTTTTAATAACCAAATGCCTGGAATGCCTTATTCTTCCTCATATGTGTTCACTCCGCCTACATATGCCCAGCCACAAAATAATGTCAATTCACAGTTTCAGCCGATGTCTCAAGTGCAAGCACATGTTGTATCTGCTACAGGACAGCCTTGGGTGTCCTCTGGTAATCAGGGTGCAGCAGTTCCTTCACCAGTACACCAGTCTAGCCAACAATCTTCAAGCACTCCTTCCACTGATTCTGCTCTAAATGTTCCTAGCCAAGCACAGCAATCTTCTTCGGATTGGCAAGAGCATTTGGCGGTTGATGGACGAAGATATTATTTCAACAGAAGGACAAGACAATCTAATTGGGAGAAGCCTTTAGAATTGATGACACCGATGGAGAGGGCTGATGCATCAACTGTTTGGAAGGAGTATACGTCTGCAGATGGGAAAAAGTATTATTACAACAAGGTTACAAGGGAGTCTAAGTGGACAATTCCAGAGGAGTTGAAGTTGGCTCGTGAACAGGCTCAAAGAGAACTAATCCAAGGAACACATTCAGAATTGAATTTGACTTCTCATATCCCTCCTGCTGTTGCTTCAGCTGAAACACCTATGGGAGCTAGTTCAGTTGGCCCCAGCACTTCTTCAGCCCTACCTGTGATGGTCTCGAGCCCTGTTGCAGTTACACCTGTGTCTTCCTTTTCTAATCCTTCTCCTATCACACCTACTGGATCATCAGTTGCTTCTGGTGCACAGCCTTCCATAATTGGTGCCGTTGGCAGTCAACCTTCTGCAGTTACTGTGAGTCCACTGCCCGCTTCTGTTTCAGGGAGTTCCGGAGTTCCTCCTACTTCGGTCAATACCACTACAAATTCAGTGAGCACTTATGAAACTGTAGCATCTCAAGATATTTCAAGTTCAGCTGATGGAACTTTGACTCAAGATATTGAGGAAGCCAAAAGAGGTATGGCAGTTGCTGGAAAAGTCAATGTGACTCCTTCAGAGGAGAAAACATTTGATGACGAACCATTGGTGTATGCTAATAAGCAGGAGGCAAAAACTGCATTCAAATCACTTCTGGAATCTGCAAATGTCCAGTCCGATTGGACTTGGGAGCAGACAATGAGGGAGATCATTACTGACAAAAGATATGGCGCTTTAAGAACTCTAGGTGAGAGGAAGCAAGCTTTTAATGAGTACTTGGGTCAAAGGAAAAAACTGGAGAACGAAGAGAGGCGCATGAGGCAGAAAAAAGCTCGGGAAGAGTTCACAAAAATGTTGGAAGAGTCCAAGGAACTTACATCAGCAACTAGATGGAGCAAAGCTGTGAGTATGTTTGAAAATGATGAACGATTCAAGGCTGTAGAACGAGGTAGAGACCGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016592 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

776

Amino Acids

85.03

Weight (kDa)

9.36

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	411 - 438	2.2e-07	WW domain
WW	PF00397	454 - 479	8.8e-08	WW domain
FF	PF01846	664 - 713	6.5e-16	FF domain
FF	PF01846	731 - 774	1.1e-11	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44910 AT1G44910
fragaria_vesca	FvH4_2g32680 FvH4_2g32680 FvH4_2g32680 FvH4_2g32680
malus_domestica	MD08G1078500.v1.1 MD15G1065300.v1.1
prunus_persica	Prupe.1G419400_v2.0.a1
pyrus_communis	pycom08g06490 pycom15g06180
rosa_chinensis	RchiOBHm_Chr6g0309991
rosa_laevigata	RLG00000010518
rosa_multiflora	Rmu_sc0000294.1_g000011
rosa_roxburghii	Rroxscaffold_7G00158970
rosa_rugosa	Rorug06G0376700 Rorug06G0376800
rosa_samantha	Rh6AG490400 Rh6BG499900 Rh6CG504800 Rh6DG490800
rosa_wichuraiana	Rw6G042690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	1709
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	1370
AccII	CGCG	1 cut(s)	552
AccIII	TCCGGA	1 cut(s)	1775
AciI	CCGC	8 cut(s)	116, 203, 474, 510, 550, 1010, 1253, 1755
AclWI	GGATC	1 cut(s)	1678
AcsI	RAATTY	2 cut(s)	1504, 1810
AcuI	CTGAAG	3 cut(s)	1521, 1569, 1923
AcyI	GRCGYC	2 cut(s)	63, 302
AfaI	GTAC	3 cut(s)	107, 1149, 2138
AfiI	CCNNNNNNNGG	4 cut(s)	45, 250, 694, 782
AflIII	ACRYGT	1 cut(s)	1078
AjnI	CCWGG	3 cut(s)	25, 859, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
Alw21I	GWGCWC	3 cut(s)	272, 1693, 1823
Alw26I	GTCTC	5 cut(s)	70, 904, 1068, 1609, 2310
Alw44I	GTGCAC	2 cut(s)	268, 1689
AlwI	GGATC	1 cut(s)	1678
AlwNI	CAGNNNCTG	2 cut(s)	1739, 1916
Ama87I	CYCGRG	4 cut(s)	393, 477, 1606, 2196
Aor13HI	TCCGGA	1 cut(s)	1775
AoxI	GGCC	5 cut(s)	255, 280, 629, 848, 1570
ApaLI	GTGCAC	2 cut(s)	268, 1689
ApeKI	GCWGC	5 cut(s)	199, 536, 584, 619, 1130
ApoI	RAATTY	2 cut(s)	1504, 1810
ArsI	GACNNNNNNTTYG	2 cut(s)	2021, 2053
Asp700I	GAANNNNTTC	1 cut(s)	1492
AspLEI	GCGC	3 cut(s)	584, 2096, 2178
AspS9I	GGNCC	5 cut(s)	281, 499, 567, 653, 1571
AsuC2I	CCSGG	3 cut(s)	60, 236, 279
AsuHPI	GGTGA	4 cut(s)	374, 720, 1134, 2123
AvaI	CYCGRG	4 cut(s)	393, 477, 1606, 2196
AvaII	GGWCC	3 cut(s)	499, 567, 653
BaeGI	GKGCMC	4 cut(s)	39, 272, 394, 1693
BanI	GGYRCC	1 cut(s)	1709
BanII	GRGCYC	1 cut(s)	1613
BauI	CACGAG	1 cut(s)	1455
BbsI	GAAGAC	2 cut(s)	857, 1626
Bbv12I	GWGCWC	3 cut(s)	272, 1693, 1823
BbvCI	CCTCAGC	1 cut(s)	610
BbvI	GCAGC	5 cut(s)	211, 523, 571, 631, 1142
BccI	CCATC	7 cut(s)	937, 1253, 1327, 1376, 1594, 1859, 2247
BceAI	ACGGC	1 cut(s)	1697
BcgI	CGANNNNNNTGC	3 cut(s)	29, 608, 642
BciT130I	CCWGG	3 cut(s)	27, 861, 975
BciVI	GTATCC	1 cut(s)	849
BcnI	CCSGG	3 cut(s)	60, 236, 279
BcoDI	GTCTC	5 cut(s)	70, 904, 1068, 1609, 2310
BfaI	CTAG	6 cut(s)	795, 1158, 1209, 1560, 2108, 2250
BfmI	CTRYAG	5 cut(s)	1092, 1377, 1731, 1833, 2301
BfoI	RGCGCY	1 cut(s)	2097
BfuI	GTATCC	1 cut(s)	849
BglI	GCCNNNNNGGC	1 cut(s)	628
BisI	GCNGC	7 cut(s)	116, 200, 203, 537, 585, 620, 1131
BlsI	GCNGC	7 cut(s)	117, 201, 204, 538, 586, 621, 1132
BmcAI	AGTACT	2 cut(s)	107, 2138
Bme1390I	CCNGG	6 cut(s)	27, 60, 236, 279, 861, 975
Bme18I	GGWCC	3 cut(s)	499, 567, 653
BmeT110I	CYCGRG	4 cut(s)	393, 477, 1606, 2196
BmgT120I	GGNCC	5 cut(s)	281, 499, 567, 653, 1571
BmiI	GGNNCC	7 cut(s)	283, 568, 569, 654, 699, 1573, 1711
BmrFI	CCNGG	6 cut(s)	27, 60, 236, 279, 861, 975
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	4 cut(s)	777, 1336, 1358, 1847
BmuI	ACTGGG	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	857, 1626
BpmI	CTGGAG	1 cut(s)	2180
Bpu10I	CCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	3 cut(s)	1050, 1827, 1863
BpuMI	CCSGG	3 cut(s)	60, 236, 279
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	63, 302
BsaI	GGTCTC	3 cut(s)	904, 1609, 2310
BsaJI	CCNNGG	7 cut(s)	25, 285, 648, 753, 1103, 1483, 2229
BsaWI	WCCGGW	2 cut(s)	1775, 2319
BsaXI	ACNNNNNCTCC	6 cut(s)	1358, 1388, 1409, 1433, 1439, 1463
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 250, 694, 782
Bse1I	ACTGG	7 cut(s)	638, 692, 1145, 1153, 1672, 2035, 2163
Bse3DI	GCAATG	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	1775
BseBI	CCWGG	3 cut(s)	27, 861, 975
BseDI	CCNNGG	7 cut(s)	25, 285, 648, 753, 1103, 1483, 2229
BseGI	GGATG	2 cut(s)	244, 792
BseLI	CCNNNNNNNGG	4 cut(s)	45, 250, 694, 782
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	3 cut(s)	624, 859, 953
BseNI	ACTGG	7 cut(s)	638, 692, 1145, 1153, 1672, 2035, 2163
BseRI	GAGGAG	5 cut(s)	208, 211, 666, 1454, 1958
BseSI	GKGCMC	4 cut(s)	39, 272, 394, 1693
BseXI	GCAGC	5 cut(s)	211, 523, 571, 631, 1142
BseYI	CCCAGC	2 cut(s)	1023, 1574
BsgI	GTGCAG	2 cut(s)	172, 1149
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	5 cut(s)	257, 282, 631, 850, 1572
BshNI	GGYRCC	1 cut(s)	1709
BsiHKAI	GWGCWC	3 cut(s)	272, 1693, 1823
BsiHKCI	CYCGRG	4 cut(s)	393, 477, 1606, 2196
BsiSI	CCGG	5 cut(s)	60, 235, 279, 1776, 2320
BslFI	GGGAC	3 cut(s)	553, 771, 935
BslI	CCNNNNNNNGG	4 cut(s)	45, 250, 694, 782
BsmAI	GTCTC	5 cut(s)	70, 904, 1068, 1609, 2310
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	3 cut(s)	553, 771, 935
BsmI	GAATGC	3 cut(s)	23, 984, 2003
BsnI	GGCC	5 cut(s)	257, 282, 631, 850, 1572
Bso31I	GGTCTC	3 cut(s)	904, 1609, 2310
BsoBI	CYCGRG	4 cut(s)	393, 477, 1606, 2196
Bsp1286I	GDGCHC	6 cut(s)	39, 272, 394, 1613, 1693, 1823
Bsp13I	TCCGGA	1 cut(s)	1775
Bsp143I	GATC	4 cut(s)	332, 1670, 2070, 2322
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	8 cut(s)	116, 203, 474, 510, 550, 1010, 1253, 1755
BspANI	GGCC	5 cut(s)	257, 282, 631, 850, 1572
BspCNI	CTCAG	3 cut(s)	623, 858, 952
BspEI	TCCGGA	1 cut(s)	1775
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	7 cut(s)	283, 568, 569, 654, 699, 1573, 1711
BspMAI	CTGCAG	2 cut(s)	1381, 1735
BspPI	GGATC	1 cut(s)	1678
BspT107I	GGYRCC	1 cut(s)	1709
BspTNI	GGTCTC	3 cut(s)	904, 1609, 2310
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	7 cut(s)	638, 692, 1145, 1153, 1672, 2035, 2163
BssECI	CCNNGG	7 cut(s)	25, 285, 648, 753, 1103, 1483, 2229
BssMI	GATC	4 cut(s)	332, 1670, 2070, 2322
BssNAI	GTATAC	1 cut(s)	1371
BssNI	GRCGYC	2 cut(s)	63, 302
BssSI	CACGAG	1 cut(s)	1455
BssT1I	CCWWGG	5 cut(s)	285, 648, 1103, 1483, 2229
Bst1107I	GTATAC	1 cut(s)	1371
Bst2BI	CACGAG	1 cut(s)	1455
Bst2UI	CCWGG	3 cut(s)	27, 861, 975
Bst4CI	ACNGT	7 cut(s)	499, 532, 837, 1050, 1357, 1741, 1834
Bst6I	CTCTTC	5 cut(s)	183, 684, 2163, 2196, 2217
BstACI	GRCGYC	2 cut(s)	63, 302
BstAPI	GCANNNNNTGC	2 cut(s)	901, 2000
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	792, 1074, 1755, 2124
BstDEI	CTNAG	4 cut(s)	610, 845, 939, 1422
BstDSI	CCRYGG	2 cut(s)	648, 753
BstF5I	GGATG	2 cut(s)	244, 792
BstFNI	CGCG	1 cut(s)	552
BstH2I	RGCGCY	1 cut(s)	2097
BstHHI	GCGC	3 cut(s)	584, 2096, 2178
BstKTI	GATC	4 cut(s)	335, 1673, 2073, 2325
BstMAI	GTCTC	5 cut(s)	70, 904, 1068, 1609, 2310
BstMBI	GATC	4 cut(s)	332, 1670, 2070, 2322
BstNI	CCWGG	3 cut(s)	27, 861, 975
BstNSI	RCATGY	2 cut(s)	904, 1082
BstSCI	CCNGG	6 cut(s)	25, 58, 234, 277, 859, 973
BstSFI	CTRYAG	5 cut(s)	1092, 1377, 1731, 1833, 2301
BstSLI	GKGCMC	4 cut(s)	39, 272, 394, 1693
BstSNI	TACGTA	1 cut(s)	317
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	5 cut(s)	211, 523, 571, 631, 1142
BstV2I	GAAGAC	2 cut(s)	857, 1626
BstX2I	RGATCY	1 cut(s)	2322
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	2322
BstZ17I	GTATAC	1 cut(s)	1371
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	5 cut(s)	257, 282, 631, 850, 1572
BtgI	CCRYGG	2 cut(s)	648, 753
BtsCI	GGATG	2 cut(s)	244, 792
BtsI	GCAGTG	1 cut(s)	1748
BtsIMutI	CAGTG	4 cut(s)	699, 1185, 1748, 1821
Cac8I	GCNNGC	4 cut(s)	792, 1074, 1755, 2124
CaiI	CAGNNNCTG	2 cut(s)	1739, 1916
CfoI	GCGC	3 cut(s)	584, 2096, 2178
Cfr13I	GGNCC	5 cut(s)	281, 499, 567, 653, 1571
CseI	GACGC	2 cut(s)	52, 97
Csp6I	GTAC	3 cut(s)	106, 1148, 2137
CviAII	CATG	5 cut(s)	45, 649, 901, 1079, 2179
CviQI	GTAC	3 cut(s)	106, 1148, 2137
DdeI	CTNAG	4 cut(s)	610, 845, 939, 1422
DpnI	GATC	4 cut(s)	334, 1672, 2072, 2324
DpnII	GATC	4 cut(s)	332, 1670, 2070, 2322
Eam1104I	CTCTTC	5 cut(s)	183, 684, 2163, 2196, 2217
EarI	CTCTTC	5 cut(s)	183, 684, 2163, 2196, 2217
EciI	GGCGGA	1 cut(s)	999
Eco105I	TACGTA	1 cut(s)	317
Eco130I	CCWWGG	5 cut(s)	285, 648, 1103, 1483, 2229
Eco24I	GRGCYC	1 cut(s)	1613
Eco31I	GGTCTC	3 cut(s)	904, 1609, 2310
Eco47I	GGWCC	3 cut(s)	499, 567, 653
Eco57I	CTGAAG	3 cut(s)	1521, 1569, 1923
Eco88I	CYCGRG	4 cut(s)	393, 477, 1606, 2196
EcoO109I	RGGNCCY	2 cut(s)	567, 653
EcoRII	CCWGG	3 cut(s)	25, 859, 973
EcoT14I	CCWWGG	5 cut(s)	285, 648, 1103, 1483, 2229
EcoT22I	ATGCAT	1 cut(s)	1351
EcoT38I	GRGCYC	1 cut(s)	1613
ErhI	CCWWGG	5 cut(s)	285, 648, 1103, 1483, 2229
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	5 cut(s)	48, 652, 904, 1082, 2182
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 1165, 1197
FaqI	GGGAC	3 cut(s)	553, 771, 935
FatI	CATG	5 cut(s)	44, 648, 900, 1078, 2178
FauI	CCCGC	3 cut(s)	481, 557, 1762
FauNDI	CATATG	2 cut(s)	997, 1018
FblI	GTMKAC	1 cut(s)	1370
Fnu4HI	GCNGC	7 cut(s)	116, 200, 203, 537, 585, 620, 1131
FokI	GGATG	2 cut(s)	251, 799
FriOI	GRGCYC	1 cut(s)	1613
Fsp4HI	GCNGC	7 cut(s)	116, 200, 203, 537, 585, 620, 1131
FspBI	CTAG	6 cut(s)	795, 1158, 1209, 1560, 2108, 2250
GlaI	GCGC	3 cut(s)	583, 2095, 2177
GluI	GCNGC	7 cut(s)	116, 200, 203, 537, 585, 620, 1131
GsaI	CCCAGC	2 cut(s)	1027, 1578
GsuI	CTGGAG	1 cut(s)	2180
HaeII	RGCGCY	1 cut(s)	2097
HaeIII	GGCC	5 cut(s)	257, 282, 631, 850, 1572
HapII	CCGG	5 cut(s)	60, 235, 279, 1776, 2320
HgaI	GACGC	2 cut(s)	52, 97
HhaI	GCGC	3 cut(s)	584, 2096, 2178
Hin1I	GRCGYC	2 cut(s)	63, 302
Hin1II	CATG	5 cut(s)	48, 652, 904, 1082, 2182
Hin6I	GCGC	3 cut(s)	582, 2094, 2176
HinP1I	GCGC	3 cut(s)	582, 2094, 2176
HincII	GTYRAC	3 cut(s)	400, 464, 1724
HindII	GTYRAC	3 cut(s)	400, 464, 1724
HindIII	AAGCTT	1 cut(s)	2124
HinfI	GANTC	8 cut(s)	1190, 1418, 1744, 1876, 1933, 2021, 2225, 2292
HpaII	CCGG	5 cut(s)	60, 235, 279, 1776, 2320
HphI	GGTGA	4 cut(s)	374, 720, 1134, 2123
Hpy188I	TCNGA	6 cut(s)	470, 1234, 1498, 1942, 2041, 2327
Hpy188III	TCNNGA	9 cut(s)	336, 1436, 1457, 1606, 1776, 1844, 1880, 2018, 2198
Hpy99I	CGWCG	1 cut(s)	307
HpyCH4III	ACNGT	7 cut(s)	499, 532, 837, 1050, 1357, 1741, 1834
HpyCH4IV	ACGT	5 cut(s)	33, 191, 302, 316, 1373
HpyF3I	CTNAG	4 cut(s)	610, 845, 939, 1422
HpySE526I	ACGT	5 cut(s)	33, 191, 302, 316, 1373
Hsp92I	GRCGYC	2 cut(s)	63, 302
Hsp92II	CATG	5 cut(s)	48, 652, 904, 1082, 2182
HspAI	GCGC	3 cut(s)	582, 2094, 2176
KflI	GGGWCCC	1 cut(s)	567
Kpn2I	TCCGGA	1 cut(s)	1775
Kzo9I	GATC	4 cut(s)	332, 1670, 2070, 2322
LmnI	GCTCC	7 cut(s)	177, 221, 427, 649, 1556, 2053, 2256
Lsp1109I	GCAGC	5 cut(s)	211, 523, 571, 631, 1142
LweI	GCATC	4 cut(s)	777, 1336, 1358, 1847
MaeI	CTAG	6 cut(s)	795, 1158, 1209, 1560, 2108, 2250
MaeII	ACGT	5 cut(s)	33, 191, 302, 316, 1373
MaeIII	GTNAC	7 cut(s)	312, 362, 481, 1408, 1621, 1735, 1930
MalI	GATC	4 cut(s)	334, 1672, 2072, 2324
MboI	GATC	4 cut(s)	332, 1670, 2070, 2322
MflI	RGATCY	1 cut(s)	2322
MhlI	GDGCHC	6 cut(s)	39, 272, 394, 1613, 1693, 1823
MlyI	GAGTC	5 cut(s)	1427, 1753, 1870, 1927, 2234
MmeI	TCCRAC	4 cut(s)	493, 526, 725, 2199
Mph1103I	ATGCAT	1 cut(s)	1351
MroI	TCCGGA	1 cut(s)	1775
MroXI	GAANNNNTTC	1 cut(s)	1492
MseI	TTAA	4 cut(s)	527, 960, 2099, 2130
MslI	CAYNNNNRTG	2 cut(s)	453, 2213
MspA1I	CMGCKG	3 cut(s)	510, 1541, 1862
MspI	CCGG	5 cut(s)	60, 235, 279, 1776, 2320
MspR9I	CCNGG	6 cut(s)	27, 60, 236, 279, 861, 975
Mva1269I	GAATGC	3 cut(s)	23, 984, 2003
MvaI	CCWGG	3 cut(s)	27, 861, 975
MvnI	CGCG	1 cut(s)	552
NciI	CCSGG	3 cut(s)	60, 236, 279
NcoI	CCATGG	1 cut(s)	648
NdeI	CATATG	2 cut(s)	997, 1018
NdeII	GATC	4 cut(s)	332, 1670, 2070, 2322
NlaIII	CATG	5 cut(s)	48, 652, 904, 1082, 2182
NlaIV	GGNNCC	7 cut(s)	283, 568, 569, 654, 699, 1573, 1711
NmuCI	GTSAC	3 cut(s)	362, 481, 1930
NsiI	ATGCAT	1 cut(s)	1351
NspI	RCATGY	2 cut(s)	904, 1082
PaeR7I	CTCGAG	1 cut(s)	1606
PciI	ACATGT	1 cut(s)	1078
PctI	GAATGC	3 cut(s)	23, 984, 2003
PdmI	GAANNNNTTC	1 cut(s)	1492
PfeI	GAWTC	3 cut(s)	1190, 2021, 2292
PflFI	GACNNNGTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	782
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	7 cut(s)	117, 201, 204, 538, 586, 621, 1132
PleI	GAGTC	5 cut(s)	1426, 1752, 1870, 1927, 2233
PpsI	GAGTC	5 cut(s)	1426, 1752, 1870, 1927, 2233
Ppu21I	YACGTR	1 cut(s)	317
PpuMI	RGGWCCY	2 cut(s)	567, 653
PscI	ACATGT	1 cut(s)	1078
Psp5II	RGGWCCY	2 cut(s)	567, 653
Psp6I	CCWGG	3 cut(s)	25, 859, 973
PspFI	CCCAGC	2 cut(s)	1023, 1574
PspGI	CCWGG	3 cut(s)	25, 859, 973
PspN4I	GGNNCC	7 cut(s)	283, 568, 569, 654, 699, 1573, 1711
PspPI	GGNCC	5 cut(s)	281, 499, 567, 653, 1571
PspPPI	RGGWCCY	2 cut(s)	567, 653
PstI	CTGCAG	2 cut(s)	1381, 1735
PstNI	CAGNNNCTG	2 cut(s)	1739, 1916
PsuI	RGATCY	1 cut(s)	2322
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	2 cut(s)	1541, 1862
RsaI	GTAC	3 cut(s)	107, 1149, 2138
RsaNI	GTAC	3 cut(s)	106, 1148, 2137
RseI	CAYNNNNRTG	2 cut(s)	453, 2213
SaqAI	TTAA	4 cut(s)	527, 960, 2099, 2130
SatI	GCNGC	7 cut(s)	116, 200, 203, 537, 585, 620, 1131
Sau3AI	GATC	4 cut(s)	332, 1670, 2070, 2322
Sau96I	GGNCC	5 cut(s)	281, 499, 567, 653, 1571
ScaI	AGTACT	2 cut(s)	107, 2138
SchI	GAGTC	5 cut(s)	1427, 1753, 1870, 1927, 2234
ScrFI	CCNGG	6 cut(s)	27, 60, 236, 279, 861, 975
SduI	GDGCHC	6 cut(s)	39, 272, 394, 1613, 1693, 1823
SfaNI	GCATC	4 cut(s)	777, 1336, 1358, 1847
SfcI	CTRYAG	5 cut(s)	1092, 1377, 1731, 1833, 2301
Sfr274I	CTCGAG	1 cut(s)	1606
SinI	GGWCC	3 cut(s)	499, 567, 653
SlaI	CTCGAG	1 cut(s)	1606
SmiMI	CAYNNNNRTG	2 cut(s)	453, 2213
SmlI	CTYRAG	4 cut(s)	1065, 1606, 1842, 1878
SmoI	CTYRAG	4 cut(s)	1065, 1606, 1842, 1878
SnaBI	TACGTA	1 cut(s)	317
SsiI	CCGC	8 cut(s)	116, 203, 474, 510, 550, 1010, 1253, 1755
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	6 cut(s)	795, 1158, 1209, 1560, 2108, 2250
StyD4I	CCNGG	6 cut(s)	25, 58, 234, 277, 859, 973
StyI	CCWWGG	5 cut(s)	285, 648, 1103, 1483, 2229
TaaI	ACNGT	7 cut(s)	499, 532, 837, 1050, 1357, 1741, 1834
TaiI	ACGT	5 cut(s)	36, 194, 305, 319, 1376
TaqI	TCGA	5 cut(s)	15, 224, 331, 383, 1607
TaqII	GACCGA	1 cut(s)	1783
TatI	WGTACW	3 cut(s)	105, 1147, 2136
TauI	GCSGC	2 cut(s)	118, 205
TfiI	GAWTC	3 cut(s)	1190, 2021, 2292
Tru1I	TTAA	4 cut(s)	527, 960, 2099, 2130
Tru9I	TTAA	4 cut(s)	527, 960, 2099, 2130
TscAI	CASTG	4 cut(s)	699, 1192, 1755, 1821
TseFI	GTSAC	3 cut(s)	362, 481, 1930
TseI	GCWGC	5 cut(s)	199, 536, 584, 619, 1130
Tsp45I	GTSAC	3 cut(s)	362, 481, 1930
TspDTI	ATGAA	4 cut(s)	660, 864, 1842, 2301
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	4 cut(s)	699, 1192, 1755, 1821
Tth111I	GACNNNGTC	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	782
VneI	GTGCAC	2 cut(s)	268, 1689
VpaK11BI	GGWCC	3 cut(s)	499, 567, 653
XapI	RAATTY	2 cut(s)	1504, 1810
XceI	RCATGY	2 cut(s)	904, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1903
XhoI	CTCGAG	1 cut(s)	1606
XmiI	GTMKAC	1 cut(s)	1370
XmnI	GAANNNNTTC	1 cut(s)	1492
XspI	CTAG	6 cut(s)	795, 1158, 1209, 1560, 2108, 2250
ZraI	GACGTC	1 cut(s)	303
ZrmI	AGTACT	2 cut(s)	107, 2138
Zsp2I	ATGCAT	1 cut(s)	1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.