Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Reverse (-)

4973762 .. 4975256

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGAAGATGATAGCTTTGAGATCGCTCTACCGCTCAGTCTCTTCCAGATCTTATCGAATAGCCGCCGCTAACCAGCAGCTACTACGCCACTCTCAGCCTCTCCACTCTTCCGCCACTGCTGCGCGAACCCTCTTCAGTGCCTCATCCCCCCTCGCCAAGGACCTCTCTTCCGATGATTACAAGTCCCCGTTTTCGAGGGGGTTGGGAAGTAGGAAATTTTATAGTGATGATGTGAGTCACTTGCCTGCCATTAAAGACCCTGCGCTGCTCAATGTTTTCAAGGATTTGCTGGCTGCTAGTTGGGATGAATTGCCCAATAGTGTCGTCCATGAAGCGAAGGCGGCATTGTCTCAGAATACTGATGACCAGACCGGCAAAGAGGTTGTCACAAATGTTTTCCGGGCAGCGGAGGCTGTTGAGGAGTTCGGCGGGATGATTACTAATTTGAAGATGGAACTTGATGACAGTGTTGGTATGAGCGGAGAGAATGTCAAGCCATTGTCAGATGAGTATGTGAATGCACTGAAGACCATTTTCAGTCGCTACATTACCTATTTGGATGCATTCGGGCCTGAGGAGACCTATTTGAGGAAGAAGGTTGAGACAGAGTTGGGAACTAAGCTGATATACTTGAAGATGAGATGCAGTGGCATCGGTTCTGAGTGGGGAAAGATCTCTGTTCTGGGAACTTCTGGACTTTCCGGGTCATATATTGAGCAAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

244

Amino Acids

26.76

Weight (kDa)

6.45

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDH5_plant	PF14290	1 - 243	2.2e-108	Succinate dehydrogenase subunit 5, mitochondrial

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	36, 483
AccII	CGCG	1 cut(s)	127
AciI	CCGC	8 cut(s)	34, 66, 69, 114, 344, 410, 432, 483
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	121, 548
AfiI	CCNNNNNNNGG	3 cut(s)	160, 409, 591
AgsI	TTSAA	3 cut(s)	283, 451, 637
AluBI	AGCT	4 cut(s)	17, 82, 625, 728
AluI	AGCT	4 cut(s)	17, 82, 625, 728
Alw26I	GTCTC	4 cut(s)	46, 357, 575, 599
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	5 cut(s)	79, 122, 268, 296, 407
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspLEI	GCGC	2 cut(s)	127, 268
AspS9I	GGNCC	2 cut(s)	163, 572
AsuC2I	CCSGG	2 cut(s)	404, 706
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	5 cut(s)	91, 109, 255, 283, 419
BccI	CCATC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BcnI	CCSGG	2 cut(s)	404, 706
BcoDI	GTCTC	4 cut(s)	46, 357, 575, 599
BfaI	CTAG	1 cut(s)	300
BglII	AGATCT	2 cut(s)	50, 675
BisI	GCNGC	8 cut(s)	66, 69, 80, 123, 269, 297, 345, 408
BlsI	GCNGC	8 cut(s)	67, 70, 81, 124, 270, 298, 346, 409
Bme1390I	CCNGG	2 cut(s)	404, 706
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	163, 572
BmrFI	CCNGG	2 cut(s)	404, 706
BmsI	GCATC	3 cut(s)	553, 635, 663
BpiI	GAAGAC	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	404, 706
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 409, 591
Bse118I	RCCGGY	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	4 cut(s)	146, 313, 441, 568
BseLI	CCNNNNNNNGG	3 cut(s)	160, 409, 591
BseMII	CTCAG	5 cut(s)	51, 110, 368, 567, 654
BseRI	GAGGAG	2 cut(s)	437, 593
BseXI	GCAGC	5 cut(s)	91, 109, 255, 283, 419
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	375, 403, 705
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	160, 409, 591
BsmAI	GTCTC	4 cut(s)	46, 357, 575, 599
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	526, 566
BsnI	GGCC	1 cut(s)	574
Bso31I	GGTCTC	1 cut(s)	575
Bsp143I	GATC	3 cut(s)	23, 50, 675
BspACI	CCGC	8 cut(s)	34, 66, 69, 114, 344, 410, 432, 483
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	5 cut(s)	50, 109, 367, 568, 655
BspFNI	CGCG	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	575
BsrBI	CCGCTC	2 cut(s)	36, 483
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	23, 50, 675
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	4 cut(s)	49, 115, 140, 175
BstC8I	GCNNGC	2 cut(s)	249, 294
BstDEI	CTNAG	6 cut(s)	37, 96, 354, 576, 621, 663
BstENI	CCTNNNNNAGG	2 cut(s)	158, 589
BstF5I	GGATG	4 cut(s)	146, 313, 441, 568
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	127, 268
BstKTI	GATC	3 cut(s)	26, 53, 678
BstMAI	GTCTC	4 cut(s)	46, 357, 575, 599
BstMBI	GATC	3 cut(s)	23, 50, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
BstSCI	CCNGG	2 cut(s)	402, 704
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	5 cut(s)	91, 109, 255, 283, 419
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	50, 675
BstYI	RGATCY	2 cut(s)	50, 675
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	146, 313, 441, 568
BtsI	GCAGTG	2 cut(s)	117, 655
BtsIMutI	CAGTG	5 cut(s)	117, 145, 475, 524, 655
Cac8I	GCNNGC	2 cut(s)	249, 294
CfoI	GCGC	2 cut(s)	127, 268
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	163, 572
CviAII	CATG	1 cut(s)	332
DdeI	CTNAG	6 cut(s)	37, 96, 354, 576, 621, 663
DpnI	GATC	3 cut(s)	25, 52, 677
DpnII	GATC	3 cut(s)	23, 50, 675
Eam1104I	CTCTTC	4 cut(s)	49, 115, 140, 175
EarI	CTCTTC	4 cut(s)	49, 115, 140, 175
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	121, 548
Eco81I	CCTNAGG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 589
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	335
FaiI	YATR	7 cut(s)	225, 333, 479, 516, 631, 712, 714
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	8 cut(s)	66, 69, 80, 123, 269, 297, 345, 408
FokI	GGATG	4 cut(s)	133, 320, 448, 575
Fsp4HI	GCNGC	8 cut(s)	66, 69, 80, 123, 269, 297, 345, 408
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	2 cut(s)	126, 267
GluI	GCNGC	8 cut(s)	66, 69, 80, 123, 269, 297, 345, 408
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	3 cut(s)	375, 403, 705
HhaI	GCGC	2 cut(s)	127, 268
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	125, 266
HinP1I	GCGC	2 cut(s)	125, 266
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	3 cut(s)	375, 403, 705
Hpy188I	TCNGA	4 cut(s)	175, 357, 508, 664
Hpy188III	TCNNGA	2 cut(s)	48, 696
HpyAV	CCTTC	2 cut(s)	334, 592
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	3 cut(s)	524, 566, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
HpyF3I	CTNAG	6 cut(s)	37, 96, 354, 576, 621, 663
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	125, 266
Kzo9I	GATC	3 cut(s)	23, 50, 675
Lsp1109I	GCAGC	5 cut(s)	91, 109, 255, 283, 419
LweI	GCATC	3 cut(s)	553, 635, 663
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	239, 388
MalI	GATC	3 cut(s)	25, 52, 677
MbiI	CCGCTC	2 cut(s)	36, 483
MboI	GATC	3 cut(s)	23, 50, 675
MboII	GAAGA	9 cut(s)	19, 36, 102, 127, 162, 463, 541, 607, 649
MflI	RGATCY	2 cut(s)	50, 675
MluCI	AATT	3 cut(s)	218, 311, 445
MlyI	GAGTC	1 cut(s)	247
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	2 cut(s)	255, 730
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	3 cut(s)	375, 403, 705
MspR9I	CCNGG	2 cut(s)	404, 706
Mva1269I	GAATGC	2 cut(s)	526, 566
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
NciI	CCSGG	2 cut(s)	404, 706
NdeII	GATC	3 cut(s)	23, 50, 675
NlaIII	CATG	1 cut(s)	335
NmuCI	GTSAC	2 cut(s)	239, 388
NsiI	ATGCAT	1 cut(s)	568
PctI	GAATGC	2 cut(s)	526, 566
PkrI	GCNGC	8 cut(s)	67, 70, 81, 124, 270, 298, 346, 409
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	163, 572
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	50, 675
SaqAI	TTAA	2 cut(s)	255, 730
SatI	GCNGC	8 cut(s)	66, 69, 80, 123, 269, 297, 345, 408
Sau3AI	GATC	3 cut(s)	23, 50, 675
Sau96I	GGNCC	2 cut(s)	163, 572
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	404, 706
SetI	ASST	9 cut(s)	19, 84, 168, 387, 557, 587, 603, 627, 730
SfaNI	GCATC	3 cut(s)	553, 635, 663
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	3 cut(s)	218, 311, 445
SsiI	CCGC	8 cut(s)	34, 66, 69, 114, 344, 410, 432, 483
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	402, 704
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	58, 197
TasI	AATT	3 cut(s)	218, 311, 445
TauI	GCSGC	3 cut(s)	68, 71, 347
Tru1I	TTAA	2 cut(s)	255, 730
Tru9I	TTAA	2 cut(s)	255, 730
TscAI	CASTG	5 cut(s)	124, 145, 475, 531, 655
TseFI	GTSAC	2 cut(s)	239, 388
TseI	GCWGC	5 cut(s)	79, 122, 268, 296, 407
Tsp45I	GTSAC	2 cut(s)	239, 388
TspDTI	ATGAA	2 cut(s)	324, 348
TspRI	CASTG	5 cut(s)	124, 145, 475, 531, 655
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	2 cut(s)	158, 589
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.