26S proteasome non-ATPase regulatory subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23540 AT5G23540 |
| fragaria_vesca | FvH4_2g34740 FvH4_2g34740 FvH4_2g34740 |
| malus_domestica | MD08G1104100.v1.1 MD15G1085300.v1.1 |
| prunus_persica | Prupe.1G439400_v2.0.a1 |
| pyrus_communis | pycom08g08550 pycom15g08050 |
| rosa_chinensis | RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401 |
| rosa_laevigata | RLG00000010717 RLG00000014338 |
| rosa_multiflora | Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007 |
| rosa_rugosa | Rorug06G0358400 Rorug06G0358500 |
| rosa_samantha | Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800 |
| rosa_wichuraiana | Rw6G040870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 68 |
| Acc36I | ACCTGC | 1 cut(s) | 232 |
| Acc65I | GGTACC | 1 cut(s) | 486 |
| AccB1I | GGYRCC | 2 cut(s) | 182, 486 |
| AciI | CCGC | 2 cut(s) | 293, 380 |
| AclWI | GGATC | 2 cut(s) | 584, 724 |
| AcoI | YGGCCR | 1 cut(s) | 664 |
| AcuI | CTGAAG | 2 cut(s) | 149, 470 |
| AcyI | GRCGYC | 1 cut(s) | 183 |
| AfaI | GTAC | 3 cut(s) | 347, 391, 488 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 386, 506 |
| AflIII | ACRYGT | 1 cut(s) | 1012 |
| AgsI | TTSAA | 6 cut(s) | 554, 562, 690, 722, 742, 932 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 2 cut(s) | 499, 1050 |
| AleI | CACNNNNGTG | 1 cut(s) | 1073 |
| AluBI | AGCT | 9 cut(s) | 83, 112, 194, 410, 549, 557, 764, 787, 961 |
| AluI | AGCT | 9 cut(s) | 83, 112, 194, 410, 549, 557, 764, 787, 961 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 2 cut(s) | 641, 1021 |
| AlwI | GGATC | 2 cut(s) | 584, 724 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1051 |
| Ama87I | CYCGRG | 1 cut(s) | 953 |
| AoxI | GGCC | 2 cut(s) | 199, 664 |
| ApeKI | GCWGC | 1 cut(s) | 802 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 131, 163, 999, 1031 |
| AseI | ATTAAT | 2 cut(s) | 534, 768 |
| Asp718I | GGTACC | 1 cut(s) | 486 |
| AspLEI | GCGC | 1 cut(s) | 185 |
| AspS9I | GGNCC | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 1 cut(s) | 341 |
| AsuII | TTCGAA | 1 cut(s) | 866 |
| AvaI | CYCGRG | 1 cut(s) | 953 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 381, 414 |
| BanI | GGYRCC | 2 cut(s) | 182, 486 |
| BanII | GRGCYC | 1 cut(s) | 114 |
| BbsI | GAAGAC | 2 cut(s) | 469, 875 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 1 cut(s) | 789 |
| BccI | CCATC | 5 cut(s) | 307, 466, 602, 721, 827 |
| BceAI | ACGGC | 1 cut(s) | 692 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 353, 387, 944, 978 |
| BciT130I | CCWGG | 2 cut(s) | 501, 1052 |
| BcoDI | GTCTC | 2 cut(s) | 641, 1021 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfaI | CTAG | 4 cut(s) | 32, 92, 227, 1081 |
| BfmI | CTRYAG | 1 cut(s) | 759 |
| BfoI | RGCGCY | 1 cut(s) | 186 |
| BfuAI | ACCTGC | 1 cut(s) | 232 |
| BisI | GCNGC | 2 cut(s) | 380, 803 |
| BlpI | GCTNAGC | 1 cut(s) | 23 |
| BlsI | GCNGC | 2 cut(s) | 381, 804 |
| Bme1390I | CCNGG | 2 cut(s) | 501, 1052 |
| BmeT110I | CYCGRG | 1 cut(s) | 953 |
| BmgT120I | GGNCC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 2 cut(s) | 184, 488 |
| BmrFI | CCNGG | 2 cut(s) | 501, 1052 |
| BmsI | GCATC | 9 cut(s) | 264, 312, 366, 505, 616, 648, 709, 979, 1009 |
| BpiI | GAAGAC | 2 cut(s) | 469, 875 |
| BpmI | CTGGAG | 1 cut(s) | 195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 23 |
| Bpu14I | TTCGAA | 1 cut(s) | 866 |
| BpuEI | CTTGAG | 3 cut(s) | 254, 263, 809 |
| BsaHI | GRCGYC | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 5 cut(s) | 303, 674, 733, 1050, 1051 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 239, 269, 929, 959 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 386, 506 |
| Bse118I | RCCGGY | 2 cut(s) | 179, 744 |
| Bse1I | ACTGG | 2 cut(s) | 397, 463 |
| BseBI | CCWGG | 2 cut(s) | 501, 1052 |
| BseDI | CCNNGG | 5 cut(s) | 303, 674, 733, 1050, 1051 |
| BseGI | GGATG | 7 cut(s) | 177, 346, 496, 594, 713, 946, 994 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 386, 506 |
| BseMII | CTCAG | 1 cut(s) | 37 |
| BseNI | ACTGG | 2 cut(s) | 397, 463 |
| BseRI | GAGGAG | 7 cut(s) | 198, 204, 244, 257, 806, 905, 950 |
| BseXI | GCAGC | 1 cut(s) | 789 |
| BshFI | GGCC | 2 cut(s) | 201, 666 |
| BshNI | GGYRCC | 2 cut(s) | 182, 486 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiHKCI | CYCGRG | 1 cut(s) | 953 |
| BsiSI | CCGG | 4 cut(s) | 180, 186, 467, 745 |
| BslFI | GGGAC | 1 cut(s) | 284 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 386, 506 |
| BsmAI | GTCTC | 2 cut(s) | 641, 1021 |
| BsmBI | CGTCTC | 1 cut(s) | 641 |
| BsmFI | GGGAC | 1 cut(s) | 284 |
| BsnI | GGCC | 2 cut(s) | 201, 666 |
| BsoBI | CYCGRG | 1 cut(s) | 953 |
| Bsp119I | TTCGAA | 1 cut(s) | 866 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp143I | GATC | 2 cut(s) | 589, 729 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 23 |
| Bsp19I | CCATGG | 2 cut(s) | 303, 733 |
| BspACI | CCGC | 2 cut(s) | 293, 380 |
| BspANI | GGCC | 2 cut(s) | 201, 666 |
| BspCNI | CTCAG | 1 cut(s) | 36 |
| BspLI | GGNNCC | 2 cut(s) | 184, 488 |
| BspMI | ACCTGC | 1 cut(s) | 232 |
| BspPI | GGATC | 2 cut(s) | 584, 724 |
| BspT104I | TTCGAA | 1 cut(s) | 866 |
| BspT107I | GGYRCC | 2 cut(s) | 182, 486 |
| BsrFI | RCCGGY | 2 cut(s) | 179, 744 |
| BsrI | ACTGG | 2 cut(s) | 397, 463 |
| BssAI | RCCGGY | 2 cut(s) | 179, 744 |
| BssECI | CCNNGG | 5 cut(s) | 303, 674, 733, 1050, 1051 |
| BssMI | GATC | 2 cut(s) | 589, 729 |
| BssNI | GRCGYC | 1 cut(s) | 183 |
| BssT1I | CCWWGG | 2 cut(s) | 303, 733 |
| Bst2UI | CCWGG | 2 cut(s) | 501, 1052 |
| Bst4CI | ACNGT | 3 cut(s) | 352, 886, 1072 |
| Bst6I | CTCTTC | 1 cut(s) | 134 |
| BstACI | GRCGYC | 1 cut(s) | 183 |
| BstBI | TTCGAA | 1 cut(s) | 866 |
| BstC8I | GCNNGC | 2 cut(s) | 181, 963 |
| BstDEI | CTNAG | 2 cut(s) | 23, 845 |
| BstDSI | CCRYGG | 3 cut(s) | 303, 674, 733 |
| BstF5I | GGATG | 7 cut(s) | 177, 346, 496, 594, 713, 946, 994 |
| BstH2I | RGCGCY | 1 cut(s) | 186 |
| BstHHI | GCGC | 1 cut(s) | 185 |
| BstKTI | GATC | 2 cut(s) | 592, 732 |
| BstMAI | GTCTC | 2 cut(s) | 641, 1021 |
| BstMBI | GATC | 2 cut(s) | 589, 729 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 191, 445 |
| BstNI | CCWGG | 2 cut(s) | 501, 1052 |
| BstNSI | RCATGY | 2 cut(s) | 439, 1016 |
| BstSCI | CCNGG | 2 cut(s) | 499, 1050 |
| BstSFI | CTRYAG | 1 cut(s) | 759 |
| BstV1I | GCAGC | 1 cut(s) | 789 |
| BstV2I | GAAGAC | 2 cut(s) | 469, 875 |
| BsuRI | GGCC | 2 cut(s) | 201, 666 |
| BtgI | CCRYGG | 3 cut(s) | 303, 674, 733 |
| BtgZI | GCGATG | 1 cut(s) | 389 |
| BtsCI | GGATG | 7 cut(s) | 177, 346, 496, 594, 713, 946, 994 |
| BtsIMutI | CAGTG | 3 cut(s) | 128, 348, 1068 |
| BveI | ACCTGC | 1 cut(s) | 232 |
| Cac8I | GCNNGC | 2 cut(s) | 181, 963 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1051 |
| CfoI | GCGC | 1 cut(s) | 185 |
| Cfr10I | RCCGGY | 2 cut(s) | 179, 744 |
| Cfr13I | GGNCC | 1 cut(s) | 199 |
| Csp6I | GTAC | 3 cut(s) | 346, 390, 487 |
| CviAII | CATG | 6 cut(s) | 154, 304, 419, 436, 734, 1013 |
| CviQI | GTAC | 3 cut(s) | 346, 390, 487 |
| DdeI | CTNAG | 2 cut(s) | 23, 845 |
| DinI | GGCGCC | 1 cut(s) | 184 |
| DpnI | GATC | 2 cut(s) | 591, 731 |
| DpnII | GATC | 2 cut(s) | 589, 729 |
| EaeI | YGGCCR | 1 cut(s) | 664 |
| Eam1104I | CTCTTC | 1 cut(s) | 134 |
| EarI | CTCTTC | 1 cut(s) | 134 |
| Ecl136II | GAGCTC | 1 cut(s) | 112 |
| Eco130I | CCWWGG | 2 cut(s) | 303, 733 |
| Eco24I | GRGCYC | 1 cut(s) | 114 |
| Eco53kI | GAGCTC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 2 cut(s) | 149, 470 |
| Eco88I | CYCGRG | 1 cut(s) | 953 |
| EcoICRI | GAGCTC | 1 cut(s) | 112 |
| EcoRII | CCWGG | 2 cut(s) | 499, 1050 |
| EcoT14I | CCWWGG | 2 cut(s) | 303, 733 |
| EcoT38I | GRGCYC | 1 cut(s) | 114 |
| EgeI | GGCGCC | 1 cut(s) | 184 |
| EheI | GGCGCC | 1 cut(s) | 184 |
| ErhI | CCWWGG | 2 cut(s) | 303, 733 |
| Esp3I | CGTCTC | 1 cut(s) | 641 |
| FaeI | CATG | 6 cut(s) | 157, 307, 422, 439, 737, 1016 |
| FaqI | GGGAC | 1 cut(s) | 284 |
| FatI | CATG | 6 cut(s) | 153, 303, 418, 435, 733, 1012 |
| FauI | CCCGC | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 2 cut(s) | 380, 803 |
| FokI | GGATG | 7 cut(s) | 184, 353, 483, 581, 700, 953, 1001 |
| FriOI | GRGCYC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 2 cut(s) | 380, 803 |
| FspBI | CTAG | 4 cut(s) | 32, 92, 227, 1081 |
| GlaI | GCGC | 1 cut(s) | 184 |
| GluI | GCNGC | 2 cut(s) | 380, 803 |
| GsuI | CTGGAG | 1 cut(s) | 195 |
| HaeII | RGCGCY | 1 cut(s) | 186 |
| HaeIII | GGCC | 2 cut(s) | 201, 666 |
| HapII | CCGG | 4 cut(s) | 180, 186, 467, 745 |
| HhaI | GCGC | 1 cut(s) | 185 |
| Hin1I | GRCGYC | 1 cut(s) | 183 |
| Hin1II | CATG | 6 cut(s) | 157, 307, 422, 439, 737, 1016 |
| Hin6I | GCGC | 1 cut(s) | 183 |
| HinP1I | GCGC | 1 cut(s) | 183 |
| HincII | GTYRAC | 1 cut(s) | 415 |
| HindII | GTYRAC | 1 cut(s) | 415 |
| HindIII | AAGCTT | 2 cut(s) | 555, 959 |
| HinfI | GANTC | 4 cut(s) | 215, 230, 297, 562 |
| HpaII | CCGG | 4 cut(s) | 180, 186, 467, 745 |
| HphI | GGTGA | 1 cut(s) | 341 |
| Hpy166II | GTNNAC | 4 cut(s) | 247, 348, 415, 529 |
| Hpy188I | TCNGA | 4 cut(s) | 55, 168, 238, 1047 |
| Hpy188III | TCNNGA | 6 cut(s) | 212, 271, 427, 598, 932, 1004 |
| Hpy8I | GTNNAC | 4 cut(s) | 247, 348, 415, 529 |
| HpyAV | CCTTC | 4 cut(s) | 282, 601, 640, 975 |
| HpyCH4III | ACNGT | 3 cut(s) | 352, 886, 1072 |
| HpyCH4IV | ACGT | 1 cut(s) | 568 |
| HpyCH4V | TGCA | 1 cut(s) | 965 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 191, 445 |
| HpyF3I | CTNAG | 2 cut(s) | 23, 845 |
| HpySE526I | ACGT | 1 cut(s) | 568 |
| Hsp92I | GRCGYC | 1 cut(s) | 183 |
| Hsp92II | CATG | 6 cut(s) | 157, 307, 422, 439, 737, 1016 |
| HspAI | GCGC | 1 cut(s) | 183 |
| KasI | GGCGCC | 1 cut(s) | 182 |
| KpnI | GGTACC | 1 cut(s) | 490 |
| KroI | GCCGGC | 1 cut(s) | 179 |
| KroNI | GCCGGC | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 589, 729 |
| LmnI | GCTCC | 2 cut(s) | 117, 191 |
| Lsp1109I | GCAGC | 1 cut(s) | 789 |
| LweI | GCATC | 9 cut(s) | 264, 312, 366, 505, 616, 648, 709, 979, 1009 |
| MaeI | CTAG | 4 cut(s) | 32, 92, 227, 1081 |
| MaeII | ACGT | 1 cut(s) | 568 |
| MaeIII | GTNAC | 1 cut(s) | 945 |
| MalI | GATC | 2 cut(s) | 591, 731 |
| MboI | GATC | 2 cut(s) | 589, 729 |
| MboII | GAAGA | 7 cut(s) | 151, 474, 832, 880, 910, 1006, 1019 |
| MfeI | CAATTG | 1 cut(s) | 966 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluCI | AATT | 2 cut(s) | 769, 966 |
| Mly113I | GGCGCC | 1 cut(s) | 183 |
| MlyI | GAGTC | 1 cut(s) | 306 |
| MmeI | TCCRAC | 2 cut(s) | 1044, 1059 |
| MreI | CGCCGGCG | 1 cut(s) | 179 |
| MroNI | GCCGGC | 1 cut(s) | 179 |
| MseI | TTAA | 5 cut(s) | 534, 642, 705, 768, 807 |
| MslI | CAYNNNNRTG | 2 cut(s) | 308, 1073 |
| MspI | CCGG | 4 cut(s) | 180, 186, 467, 745 |
| MspR9I | CCNGG | 2 cut(s) | 501, 1052 |
| MunI | CAATTG | 1 cut(s) | 966 |
| MvaI | CCWGG | 2 cut(s) | 501, 1052 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 191, 445 |
| NaeI | GCCGGC | 1 cut(s) | 181 |
| NarI | GGCGCC | 1 cut(s) | 183 |
| NcoI | CCATGG | 2 cut(s) | 303, 733 |
| NdeII | GATC | 2 cut(s) | 589, 729 |
| NgoMIV | GCCGGC | 1 cut(s) | 179 |
| NlaIII | CATG | 6 cut(s) | 157, 307, 422, 439, 737, 1016 |
| NlaIV | GGNNCC | 2 cut(s) | 184, 488 |
| NmeAIII | GCCGAG | 1 cut(s) | 642 |
| NspI | RCATGY | 2 cut(s) | 439, 1016 |
| NspV | TTCGAA | 1 cut(s) | 866 |
| OliI | CACNNNNGTG | 1 cut(s) | 1073 |
| PasI | CCCWGGG | 1 cut(s) | 1051 |
| PciI | ACATGT | 1 cut(s) | 1012 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1071 |
| PdiI | GCCGGC | 1 cut(s) | 181 |
| PfeI | GAWTC | 3 cut(s) | 215, 230, 562 |
| PflFI | GACNNNGTC | 1 cut(s) | 1070 |
| PfoI | TCCNGGA | 1 cut(s) | 499 |
| PkrI | GCNGC | 2 cut(s) | 381, 804 |
| PleI | GAGTC | 1 cut(s) | 305 |
| PluTI | GGCGCC | 1 cut(s) | 186 |
| PpsI | GAGTC | 1 cut(s) | 305 |
| PscI | ACATGT | 1 cut(s) | 1012 |
| PshBI | ATTAAT | 2 cut(s) | 534, 768 |
| PsiI | TTATAA | 1 cut(s) | 68 |
| Psp124BI | GAGCTC | 1 cut(s) | 114 |
| Psp6I | CCWGG | 2 cut(s) | 499, 1050 |
| PspGI | CCWGG | 2 cut(s) | 499, 1050 |
| PspN4I | GGNNCC | 2 cut(s) | 184, 488 |
| PspPI | GGNCC | 1 cut(s) | 199 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1051 |
| PsyI | GACNNNGTC | 1 cut(s) | 1070 |
| RsaI | GTAC | 3 cut(s) | 347, 391, 488 |
| RsaNI | GTAC | 3 cut(s) | 346, 390, 487 |
| RseI | CAYNNNNRTG | 2 cut(s) | 308, 1073 |
| SacI | GAGCTC | 1 cut(s) | 114 |
| SaqAI | TTAA | 5 cut(s) | 534, 642, 705, 768, 807 |
| SatI | GCNGC | 2 cut(s) | 380, 803 |
| Sau3AI | GATC | 2 cut(s) | 589, 729 |
| Sau96I | GGNCC | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 306 |
| ScrFI | CCNGG | 2 cut(s) | 501, 1052 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SfaNI | GCATC | 9 cut(s) | 264, 312, 366, 505, 616, 648, 709, 979, 1009 |
| SfcI | CTRYAG | 1 cut(s) | 759 |
| SfoI | GGCGCC | 1 cut(s) | 184 |
| SfuI | TTCGAA | 1 cut(s) | 866 |
| SgrAI | CRCCGGYG | 1 cut(s) | 179 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 308, 1073 |
| SmlI | CTYRAG | 3 cut(s) | 269, 278, 788 |
| SmoI | CTYRAG | 3 cut(s) | 269, 278, 788 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| Sse9I | AATT | 2 cut(s) | 769, 966 |
| SsiI | CCGC | 2 cut(s) | 293, 380 |
| SspDI | GGCGCC | 1 cut(s) | 182 |
| SspI | AATATT | 1 cut(s) | 59 |
| SspMI | CTAG | 4 cut(s) | 32, 92, 227, 1081 |
| SstI | GAGCTC | 1 cut(s) | 114 |
| StyD4I | CCNGG | 2 cut(s) | 499, 1050 |
| StyI | CCWWGG | 2 cut(s) | 303, 733 |
| TaaI | ACNGT | 3 cut(s) | 352, 886, 1072 |
| TaiI | ACGT | 1 cut(s) | 571 |
| TaqI | TCGA | 6 cut(s) | 355, 363, 405, 866, 1005, 1065 |
| TasI | AATT | 2 cut(s) | 769, 966 |
| TatI | WGTACW | 1 cut(s) | 345 |
| TauI | GCSGC | 1 cut(s) | 382 |
| TfiI | GAWTC | 3 cut(s) | 215, 230, 562 |
| Tru1I | TTAA | 5 cut(s) | 534, 642, 705, 768, 807 |
| Tru9I | TTAA | 5 cut(s) | 534, 642, 705, 768, 807 |
| TscAI | CASTG | 3 cut(s) | 135, 355, 1075 |
| TseI | GCWGC | 1 cut(s) | 802 |
| TspDTI | ATGAA | 1 cut(s) | 911 |
| TspGWI | ACGGA | 2 cut(s) | 300, 623 |
| TspRI | CASTG | 3 cut(s) | 135, 355, 1075 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1070 |
| VspI | ATTAAT | 2 cut(s) | 534, 768 |
| XceI | RCATGY | 2 cut(s) | 439, 1016 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 310, 497 |
| XspI | CTAG | 4 cut(s) | 32, 92, 227, 1081 |