Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007010

Physical Location & Seq

Genomic Coordinates Reverse (-)

5319396 .. 5319833

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTGGTGCCATTCGCGTACACGATGACATGCTTCTGGCAGCCTCTGAAGCTCTGGCTATGCAAGTTTCCGAGGAACACTACGCCAAAGGATTGATCTACCCACCATTTACCAACATCAGAAAGATATCAGCCAACATTGCTGCTAAAGTCGCTGCTAAGGTCTATGAACTCGGTCTGGCTTCTAATCTGCCTCGACCAAAAGATCTCGTCAAGTATGCCGAGAGTTGCATGTACAGCCCGCGCTACAGAAGCTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006090 GO:0006098 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022607 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0048046 GO:0050896 GO:0051156 GO:0051186 GO:0051259 GO:0051260 GO:0055044 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0072524 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

88

Amino Acids

9.71

Weight (kDa)

9.33

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malic_M	PF03949	2 - 55	2.7e-11	Malic enzyme, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11670 AT5G25880 AT5G25880 AT5G25880
fragaria_vesca	FvH4_2g35330 FvH4_2g35330 FvH4_2g35330
malus_domestica	MD08G1111500.v1.1 MD15G1091000.v1.1
prunus_persica	Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1
pyrus_communis	pycom08g09260 pycom15g08500
rosa_chinensis	RchiOBHm_Chr6g0306591
rosa_laevigata	RLG00000010782
rosa_multiflora	Rmu_sc0017624.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161630
rosa_rugosa	Rorug06G0350700 Rorug06G0350800
rosa_samantha	Rh6AG463100 Rh6BG437800
rosa_wichuraiana	Rw6G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	2 cut(s)	18, 244
AciI	CCGC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	21, 236
AluBI	AGCT	2 cut(s)	53, 255
AluI	AGCT	2 cut(s)	53, 255
AlwNI	CAGNNNCTG	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	41, 143, 155
AspLEI	GCGC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	53, 130, 142
BfmI	CTRYAG	1 cut(s)	247
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	3 cut(s)	42, 144, 156
BlsI	GCNGC	3 cut(s)	43, 145, 157
BmiI	GGNNCC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	53, 130, 142
Bsh1236I	CGCG	2 cut(s)	18, 244
BshNI	GGYRCC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	96, 205
BspACI	CCGC	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	18, 244
BspLI	GGNNCC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	96, 205
Bst4CI	ACNGT	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	18, 244
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	99, 208
BstMBI	GATC	2 cut(s)	96, 205
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 140, 152, 237, 252
BstNSI	RCATGY	2 cut(s)	34, 235
BstSFI	CTRYAG	1 cut(s)	247
BstUI	CGCG	2 cut(s)	18, 244
BstV1I	GCAGC	3 cut(s)	53, 130, 142
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	20, 235
CviAII	CATG	2 cut(s)	31, 232
CviJI	RGCY	8 cut(s)	5, 44, 53, 59, 134, 182, 240, 255
CviKI_1	RGCY	8 cut(s)	5, 44, 53, 59, 134, 182, 240, 255
CviQI	GTAC	2 cut(s)	20, 235
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	98, 207
DpnII	GATC	2 cut(s)	96, 205
Eco32I	GATATC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	129
FaeI	CATG	2 cut(s)	34, 235
FaiI	YATR	5 cut(s)	32, 62, 168, 219, 233
FatI	CATG	2 cut(s)	30, 231
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	42, 144, 156
Fsp4HI	GCNGC	3 cut(s)	42, 144, 156
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	42, 144, 156
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	34, 235
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	49, 73, 122
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	64, 231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 140, 152, 237, 252
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	34, 235
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	96, 205
LpnPI	CCDG	3 cut(s)	23, 41, 164
Lsp1109I	GCAGC	3 cut(s)	53, 130, 142
MalI	GATC	2 cut(s)	98, 207
MboI	GATC	2 cut(s)	96, 205
MflI	RGATCY	1 cut(s)	205
MnlI	CCTC	3 cut(s)	55, 67, 204
MseI	TTAA	1 cut(s)	262
MvnI	CGCG	2 cut(s)	18, 244
MwoI	GCNNNNNNNGC	5 cut(s)	50, 140, 152, 237, 252
NdeII	GATC	2 cut(s)	96, 205
NlaIII	CATG	2 cut(s)	34, 235
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	2 cut(s)	34, 235
PkrI	GCNGC	3 cut(s)	43, 145, 157
PspN4I	GGNNCC	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	21, 236
RsaNI	GTAC	2 cut(s)	20, 235
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	3 cut(s)	42, 144, 156
Sau3AI	GATC	2 cut(s)	96, 205
SetI	ASST	3 cut(s)	55, 165, 257
SfcI	CTRYAG	1 cut(s)	247
SsiI	CCGC	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	196
TaqII	GACCGA	1 cut(s)	164
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseI	GCWGC	3 cut(s)	41, 143, 155
TspDTI	ATGAA	1 cut(s)	183
XceI	RCATGY	2 cut(s)	34, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.