Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007010

Physical Location & Seq

Genomic Coordinates Reverse (-)

4353331 .. 4358533

Gene Structure 5203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGATAATATCTGCCGTAGCCTCTAATATGATGATGTCTCTGACCAGACGCACGTTTCTGAAGAGAATAGTGGGTGTGGGAGAACCAAAGGTTTGGGCTTTCATGGGGAGTATAGTGAAGGAGATGGAGAGCAAGGCTGGTTTTGGTGGGGGTGTTCAGGACGTGTACGGTGAGGATTGTGCCTCGGAGGATCAGGTTCTCACCCCCTGGACTGCTTCTGTTGCAAGTGGACATACTTTGTTGCGGGAACCACGCTACAACAAAGGACTTGCCTTCACTGAGAGGGAGAGAGATGCTCATTACTTGCGTGGGCTTCTGCCTCCAGCAGTCCTGACCCAAGAGCTTCAGGAAAAGAAGATAATGCACAATCTTCGAAAATATGAGGTTCCATTGCAAAGATATATGGCCATGATGGATCTTCAGGAGAGAAATGAAGGGCTGTTTTATAAGCTTTTGATTGATAATGTTGAGGAGCTGCTCCCTGTCGTGTACACCCCTACAGTTGGTGAGGCTTGCCAAAAATATGGTAGCATTTTCAGGCGTCCTCAGGGTCTTTATGTCAGTTTAAAAGACAAGGGAAAAATCCTTGAAGTACTAAAAAACTGGCCAGAAAGGAGAATTCAAGTTATTGTTGTGACTGATGGTGAGCGTATTTTGGGGCTTGGAGATCTTGGCTGTCAGGGAATGGGAATTCCAGTTGGAAAGCTTTCTTTGTATACAGCATTGGGTGGAGTTCCTCCTTCAGCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACACTGGGCTTAAGCACAAGAGGGCAACTGGACAGGAATATGCAGAGCTTCTTGAGGAATTCATGACTGCAGTCAAGAGGAATTATGGGGAGAAAATTCTAGTTCAGTTTGAAGATTTTGCAAACCACAATGCATTTGAACTGCTGTCTAAATACAGTTCAAGTCACCTTGTGTTTAATGATGATATACAGGGAACAGCATCTGTGGTGTTAGCAGGGCTTATAGCATCCTTGAAATTAATTGGGGGAACTTTAGCTGATCATACTTTCTTATTTTTGGGTGCCGGAGAGGCAGGAACTGGTATAGCGGAGCTTATTGCTCTTGAGATATCAAAAAAGACCAAAGCTCCAGTTGAAGAAACCCGTAAGAAGATTTGGCTTGTGGATTCAAAGGGATTGATTGTTCAATCTCGTGTAGAATCACTTCAACATTTTAAGAAGCCTTGGGCTCATGAGCATGAACCTGTAAGGGAACTTGTCGATGCTGTGAAGGCAATCAAACCAACAGTGTTGATAGGAACATCTGGTGTAGGAAAGCAATTTACACAGGAAGTGGTCGAGGCCATGGCATCTTTTAACGAGAAACCTCTGATCCTCGCTCTTTCCAACCCAACATCACAATCTGAGTGTACTGCTGAAGAAGCTTACACATGGACCAAGGGTCAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCGGTTGAATATGAGGACAAACTCCTAGTGCCTGGCCAGGCCAACAATGCTTACATATTTCCTGGTTTTGGTTTGGGATTGATCATCTCTGGTGCCATTCGTGTACACGATGAAATGCTTTTGGCAGCCTCTGAAGCTTTGGCTACCCAAGTCACCCAAGAAAACTACGACAAAGGATTGATTTACCCACCATTTACCAACATCAGAAAGATATCAGCAAACATCGCTGCTAAGGTCGCTGCTACGGTTTATGACCTTGGTCTGGCTTCTAATCTGCCGCGACCAAAAGATCTTGTTAAGTATGCAGAGAGCAGAATGTACAGCCCACTCTACAGAAACTATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006090 GO:0006098 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022607 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0048046 GO:0050896 GO:0051156 GO:0051186 GO:0051259 GO:0051260 GO:0055044 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0072524 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

616

Amino Acids

68.09

Weight (kDa)

6.2

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
malic	PF00390	141 - 321	1.2e-77	Malic enzyme, N-terminal domain
Malic_M	PF03949	332 - 583	7.8e-96	Malic enzyme, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11670 AT5G25880 AT5G25880 AT5G25880
fragaria_vesca	FvH4_2g35330 FvH4_2g35330 FvH4_2g35330
malus_domestica	MD08G1111500.v1.1 MD15G1091000.v1.1
prunus_persica	Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1
pyrus_communis	pycom08g09260 pycom15g08500
rosa_chinensis	RchiOBHm_Chr6g0306591
rosa_laevigata	RLG00000010782
rosa_multiflora	Rmu_sc0017624.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161630
rosa_rugosa	Rorug06G0350700 Rorug06G0350800
rosa_samantha	Rh6AG463100 Rh6BG437800
rosa_wichuraiana	Rw6G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccB1I	GGYRCC	2 cut(s)	1088, 1595
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	1783
AciI	CCGC	3 cut(s)	244, 1115, 1781
AclWI	GGATC	4 cut(s)	198, 423, 1393, 1496
AcoI	YGGCCR	3 cut(s)	405, 605, 1537
AcsI	RAATTY	4 cut(s)	618, 690, 866, 903
AcuI	CTGAAG	6 cut(s)	80, 329, 404, 726, 1464, 1656
AcyI	GRCGYC	1 cut(s)	541
AdeI	CACNNNGTG	1 cut(s)	979
AfaI	GTAC	6 cut(s)	167, 491, 594, 1438, 1608, 1823
AfiI	CCNNNNNNNGG	3 cut(s)	503, 1571, 1765
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	162
AhdI	GACNNNNNGTC	1 cut(s)	1467
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	4 cut(s)	206, 1534, 1539, 1564
AloI	GAACNNNNNNTCC	2 cut(s)	1194, 1226
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	4 cut(s)	198, 423, 1393, 1496
AlwNI	CAGNNNCTG	3 cut(s)	1010, 1106, 1634
AoxI	GGCC	5 cut(s)	405, 605, 1368, 1537, 1542
ApeKI	GCWGC	4 cut(s)	475, 1628, 1730, 1742
ApoI	RAATTY	4 cut(s)	618, 690, 866, 903
AseI	ATTAAT	1 cut(s)	1046
Asp700I	GAANNNNTTC	2 cut(s)	706, 1230
AspS9I	GGNCC	1 cut(s)	1461
AsuHPI	GGTGA	6 cut(s)	182, 193, 518, 656, 965, 1648
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	1461
AxyI	CCTNAGG	1 cut(s)	546
BalI	TGGCCA	3 cut(s)	407, 607, 1539
BanI	GGYRCC	2 cut(s)	1088, 1595
BanII	GRGCYC	1 cut(s)	1258
BarI	GAAGNNNNNNTAC	2 cut(s)	1215, 1247
BauI	CACGAG	1 cut(s)	1218
BbvI	GCAGC	4 cut(s)	462, 1640, 1717, 1729
BccI	CCATC	3 cut(s)	118, 406, 635
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	4 cut(s)	208, 1536, 1541, 1566
BclI	TGATCA	2 cut(s)	1066, 1584
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	3 cut(s)	908, 1485, 1529
BfmI	CTRYAG	3 cut(s)	498, 876, 1834
BfrI	CTTAAG	1 cut(s)	818
BglI	GCCNNNNNGGC	1 cut(s)	1097
BglII	AGATCT	2 cut(s)	667, 1792
BisI	GCNGC	5 cut(s)	476, 1629, 1731, 1743, 1781
BlsI	GCNGC	5 cut(s)	477, 1630, 1732, 1744, 1782
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	4 cut(s)	208, 1536, 1541, 1566
Bme18I	GGWCC	1 cut(s)	1461
BmeRI	GACNNNNNGTC	1 cut(s)	1467
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	1461
BmiI	GGNNCC	4 cut(s)	249, 387, 1090, 1597
BmrFI	CCNGG	4 cut(s)	208, 1536, 1541, 1566
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	5 cut(s)	283, 1016, 1043, 1279, 1385
BmuI	ACTGGG	1 cut(s)	822
BoxI	GACNNNNGTC	2 cut(s)	878, 1761
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	2 cut(s)	306, 1140
Bpu10I	CCTNAGC	1 cut(s)	1734
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	881, 1151
BsaHI	GRCGYC	1 cut(s)	541
BsaJI	CCNNGG	6 cut(s)	183, 206, 1250, 1371, 1464, 1759
BsaWI	WCCGGW	1 cut(s)	1504
BsaXI	ACNNNNNCTCC	2 cut(s)	1138, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 1571, 1765
Bse1I	ACTGG	6 cut(s)	608, 695, 817, 841, 1111, 1157
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	4 cut(s)	208, 1536, 1541, 1566
BseDI	CCNNGG	6 cut(s)	183, 206, 1250, 1371, 1464, 1759
BseGI	GGATG	1 cut(s)	1034
BseLI	CCNNNNNNNGG	3 cut(s)	503, 1571, 1765
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	270, 560, 1422
BseNI	ACTGG	6 cut(s)	608, 695, 817, 841, 1111, 1157
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	4 cut(s)	462, 1640, 1717, 1729
Bsh1236I	CGCG	1 cut(s)	1783
BshFI	GGCC	5 cut(s)	407, 607, 1370, 1539, 1544
BshNI	GGYRCC	2 cut(s)	1088, 1595
BsiSI	CCGG	2 cut(s)	1092, 1505
BslI	CCNNNNNNNGG	3 cut(s)	503, 1571, 1765
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	5 cut(s)	407, 607, 1370, 1539, 1544
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	1258
Bsp1407I	TGTACA	3 cut(s)	489, 1606, 1821
Bsp143I	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
Bsp19I	CCATGG	1 cut(s)	1371
BspACI	CCGC	3 cut(s)	244, 1115, 1781
BspANI	GGCC	5 cut(s)	407, 607, 1370, 1539, 1544
BspCNI	CTCAG	3 cut(s)	271, 559, 1423
BspFNI	CGCG	1 cut(s)	1783
BspHI	TCATGA	2 cut(s)	870, 1258
BspLI	GGNNCC	4 cut(s)	249, 387, 1090, 1597
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	4 cut(s)	198, 423, 1393, 1496
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	1088, 1595
BspTI	CTTAAG	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	389
BsrGI	TGTACA	3 cut(s)	489, 1606, 1821
BsrI	ACTGG	6 cut(s)	608, 695, 817, 841, 1111, 1157
BssECI	CCNNGG	6 cut(s)	183, 206, 1250, 1371, 1464, 1759
BssMI	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
BssNAI	GTATAC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	541
BssSI	CACGAG	1 cut(s)	1218
BssT1I	CCWWGG	4 cut(s)	1250, 1371, 1464, 1759
Bst1107I	GTATAC	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	1218
Bst2UI	CCWGG	4 cut(s)	208, 1536, 1541, 1566
Bst4CI	ACNGT	5 cut(s)	170, 502, 965, 1315, 1750
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	541
BstAFI	CTTAAG	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	1481
BstAUI	TGTACA	3 cut(s)	489, 1606, 1821
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	514, 748, 752
BstDEI	CTNAG	4 cut(s)	279, 546, 1431, 1734
BstDSI	CCRYGG	1 cut(s)	1371
BstF5I	GGATG	1 cut(s)	1034
BstFNI	CGCG	1 cut(s)	1783
BstKTI	GATC	8 cut(s)	193, 418, 670, 1069, 1401, 1504, 1587, 1795
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
BstMWI	GCNNNNNNNGC	9 cut(s)	221, 1097, 1298, 1448, 1481, 1550, 1637, 1727, 1739
BstNI	CCWGG	4 cut(s)	208, 1536, 1541, 1566
BstNSI	RCATGY	1 cut(s)	750
BstPAI	GACNNNNGTC	2 cut(s)	878, 1761
BstSCI	CCNGG	4 cut(s)	206, 1534, 1539, 1564
BstSFI	CTRYAG	3 cut(s)	498, 876, 1834
BstUI	CGCG	1 cut(s)	1783
BstV1I	GCAGC	4 cut(s)	462, 1640, 1717, 1729
BstX2I	RGATCY	3 cut(s)	415, 667, 1792
BstXI	CCANNNNNNTGG	2 cut(s)	93, 524
BstYI	RGATCY	3 cut(s)	415, 667, 1792
BstZ17I	GTATAC	1 cut(s)	717
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	5 cut(s)	407, 607, 1370, 1539, 1544
BtgI	CCRYGG	1 cut(s)	1371
BtgZI	GCGATG	1 cut(s)	1711
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	1034
BtsIMutI	CAGTG	3 cut(s)	276, 810, 1320
Cac8I	GCNNGC	3 cut(s)	514, 748, 752
CaiI	CAGNNNCTG	3 cut(s)	1010, 1106, 1634
CciI	TCATGA	2 cut(s)	870, 1258
Cfr13I	GGNCC	1 cut(s)	1461
CseI	GACGC	2 cut(s)	57, 530
Csp6I	GTAC	6 cut(s)	166, 490, 593, 1437, 1607, 1822
CviAII	CATG	8 cut(s)	103, 409, 747, 871, 1259, 1265, 1372, 1458
CviQI	GTAC	6 cut(s)	166, 490, 593, 1437, 1607, 1822
DdeI	CTNAG	4 cut(s)	279, 546, 1431, 1734
DpnI	GATC	8 cut(s)	192, 417, 669, 1068, 1400, 1503, 1586, 1794
DpnII	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
DraI	TTTAAA	1 cut(s)	567
DraIII	CACNNNGTG	1 cut(s)	979
DriI	GACNNNNNGTC	1 cut(s)	1467
EaeI	YGGCCR	3 cut(s)	405, 605, 1537
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	1467
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	4 cut(s)	1250, 1371, 1464, 1759
Eco24I	GRGCYC	1 cut(s)	1258
Eco32I	GATATC	2 cut(s)	1137, 1716
Eco47I	GGWCC	1 cut(s)	1461
Eco57I	CTGAAG	6 cut(s)	80, 329, 404, 726, 1464, 1656
Eco81I	CCTNAGG	1 cut(s)	546
EcoRI	GAATTC	3 cut(s)	618, 690, 866
EcoRII	CCWGG	4 cut(s)	206, 1534, 1539, 1564
EcoRV	GATATC	2 cut(s)	1137, 1716
EcoT14I	CCWWGG	4 cut(s)	1250, 1371, 1464, 1759
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	1258
ErhI	CCWWGG	4 cut(s)	1250, 1371, 1464, 1759
FaeI	CATG	8 cut(s)	106, 412, 750, 874, 1262, 1268, 1375, 1461
FatI	CATG	8 cut(s)	102, 408, 746, 870, 1258, 1264, 1371, 1457
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	2 cut(s)	1066, 1584
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	5 cut(s)	476, 1629, 1731, 1743, 1781
FokI	GGATG	1 cut(s)	1021
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	5 cut(s)	476, 1629, 1731, 1743, 1781
FspBI	CTAG	3 cut(s)	908, 1485, 1529
GluI	GCNGC	5 cut(s)	476, 1629, 1731, 1743, 1781
GsuI	CTGGAG	2 cut(s)	306, 1140
HaeIII	GGCC	5 cut(s)	407, 607, 1370, 1539, 1544
HapII	CCGG	2 cut(s)	1092, 1505
HgaI	GACGC	2 cut(s)	57, 530
Hin1I	GRCGYC	1 cut(s)	541
Hin1II	CATG	8 cut(s)	106, 412, 750, 874, 1262, 1268, 1375, 1461
HindIII	AAGCTT	4 cut(s)	449, 704, 1449, 1638
HinfI	GANTC	2 cut(s)	1193, 1226
HpaII	CCGG	2 cut(s)	1092, 1505
HphI	GGTGA	6 cut(s)	182, 193, 518, 656, 965, 1648
Hpy166II	GTNNAC	8 cut(s)	166, 230, 490, 492, 717, 1437, 1607, 1609
Hpy188I	TCNGA	7 cut(s)	42, 60, 187, 1398, 1432, 1636, 1709
Hpy188III	TCNNGA	9 cut(s)	158, 331, 347, 422, 860, 871, 883, 1130, 1259
Hpy8I	GTNNAC	8 cut(s)	166, 230, 490, 492, 717, 1437, 1607, 1609
HpyAV	CCTTC	5 cut(s)	112, 283, 428, 750, 1291
HpyCH4III	ACNGT	5 cut(s)	170, 502, 965, 1315, 1750
HpyCH4IV	ACGT	2 cut(s)	53, 162
HpyCH4V	TGCA	8 cut(s)	224, 364, 394, 851, 878, 929, 941, 1808
HpyF10VI	GCNNNNNNNGC	9 cut(s)	221, 1097, 1298, 1448, 1481, 1550, 1637, 1727, 1739
HpyF3I	CTNAG	4 cut(s)	279, 546, 1431, 1734
HpySE526I	ACGT	2 cut(s)	53, 162
Hsp92I	GRCGYC	1 cut(s)	541
Hsp92II	CATG	8 cut(s)	106, 412, 750, 874, 1262, 1268, 1375, 1461
Ksp22I	TGATCA	2 cut(s)	1066, 1584
Kzo9I	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
LmnI	GCTCC	4 cut(s)	472, 483, 1117, 1159
Lsp1109I	GCAGC	4 cut(s)	462, 1640, 1717, 1729
LweI	GCATC	5 cut(s)	283, 1016, 1043, 1279, 1385
MaeI	CTAG	3 cut(s)	908, 1485, 1529
MaeII	ACGT	2 cut(s)	53, 162
MaeIII	GTNAC	3 cut(s)	634, 971, 1654
MalI	GATC	8 cut(s)	192, 417, 669, 1068, 1400, 1503, 1586, 1794
MboI	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
MboII	GAAGA	8 cut(s)	73, 362, 367, 410, 932, 1175, 1189, 1457
MflI	RGATCY	3 cut(s)	415, 667, 1792
MhlI	GDGCHC	1 cut(s)	1258
MlsI	TGGCCA	3 cut(s)	407, 607, 1539
MluCI	AATT	8 cut(s)	618, 690, 866, 889, 903, 1043, 1047, 1346
MluNI	TGGCCA	3 cut(s)	407, 607, 1539
MmeI	TCCRAC	2 cut(s)	679, 1437
Mox20I	TGGCCA	3 cut(s)	407, 607, 1539
Mph1103I	ATGCAT	1 cut(s)	943
MroXI	GAANNNNTTC	2 cut(s)	706, 1230
MscI	TGGCCA	3 cut(s)	407, 607, 1539
MseI	TTAA	7 cut(s)	566, 819, 984, 1046, 1242, 1383, 1800
MslI	CAYNNNNRTG	1 cut(s)	1263
Msp20I	TGGCCA	3 cut(s)	407, 607, 1539
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	2 cut(s)	1092, 1505
MspR9I	CCNGG	4 cut(s)	208, 1536, 1541, 1566
MvaI	CCWGG	4 cut(s)	208, 1536, 1541, 1566
MvnI	CGCG	1 cut(s)	1783
MwoI	GCNNNNNNNGC	9 cut(s)	221, 1097, 1298, 1448, 1481, 1550, 1637, 1727, 1739
NcoI	CCATGG	1 cut(s)	1371
NdeII	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
NlaIII	CATG	8 cut(s)	106, 412, 750, 874, 1262, 1268, 1375, 1461
NlaIV	GGNNCC	4 cut(s)	249, 387, 1090, 1597
NmuCI	GTSAC	3 cut(s)	634, 971, 1654
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	1 cut(s)	750
NspV	TTCGAA	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	750
PagI	TCATGA	2 cut(s)	870, 1258
PdmI	GAANNNNTTC	2 cut(s)	706, 1230
PfeI	GAWTC	2 cut(s)	1193, 1226
PkrI	GCNGC	5 cut(s)	477, 1630, 1732, 1744, 1782
PshAI	GACNNNNGTC	2 cut(s)	878, 1761
PshBI	ATTAAT	1 cut(s)	1046
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	4 cut(s)	206, 1534, 1539, 1564
PspGI	CCWGG	4 cut(s)	206, 1534, 1539, 1564
PspN4I	GGNNCC	4 cut(s)	249, 387, 1090, 1597
PspPI	GGNCC	1 cut(s)	1461
PstI	CTGCAG	1 cut(s)	880
PstNI	CAGNNNCTG	3 cut(s)	1010, 1106, 1634
PsuI	RGATCY	3 cut(s)	415, 667, 1792
RsaI	GTAC	6 cut(s)	167, 491, 594, 1438, 1608, 1823
RsaNI	GTAC	6 cut(s)	166, 490, 593, 1437, 1607, 1822
RseI	CAYNNNNRTG	1 cut(s)	1263
SaqAI	TTAA	7 cut(s)	566, 819, 984, 1046, 1242, 1383, 1800
SatI	GCNGC	5 cut(s)	476, 1629, 1731, 1743, 1781
Sau3AI	GATC	8 cut(s)	190, 415, 667, 1066, 1398, 1501, 1584, 1792
Sau96I	GGNCC	1 cut(s)	1461
ScaI	AGTACT	1 cut(s)	594
ScrFI	CCNGG	4 cut(s)	208, 1536, 1541, 1566
SduI	GDGCHC	1 cut(s)	1258
SfaNI	GCATC	5 cut(s)	283, 1016, 1043, 1279, 1385
SfcI	CTRYAG	3 cut(s)	498, 876, 1834
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	1 cut(s)	1461
SmiMI	CAYNNNNRTG	1 cut(s)	1263
SmlI	CTYRAG	3 cut(s)	818, 860, 1130
SmoI	CTYRAG	3 cut(s)	818, 860, 1130
SphI	GCATGC	1 cut(s)	750
Sse9I	AATT	8 cut(s)	618, 690, 866, 889, 903, 1043, 1047, 1346
SsiI	CCGC	3 cut(s)	244, 1115, 1781
SspMI	CTAG	3 cut(s)	908, 1485, 1529
StyD4I	CCNGG	4 cut(s)	206, 1534, 1539, 1564
StyI	CCWWGG	4 cut(s)	1250, 1371, 1464, 1759
TaaI	ACNGT	5 cut(s)	170, 502, 965, 1315, 1750
TaiI	ACGT	2 cut(s)	56, 165
TaqI	TCGA	3 cut(s)	373, 1287, 1365
TasI	AATT	8 cut(s)	618, 690, 866, 889, 903, 1043, 1047, 1346
TatI	WGTACW	5 cut(s)	489, 592, 1436, 1606, 1821
TauI	GCSGC	1 cut(s)	1783
TfiI	GAWTC	2 cut(s)	1193, 1226
Tru1I	TTAA	7 cut(s)	566, 819, 984, 1046, 1242, 1383, 1800
Tru9I	TTAA	7 cut(s)	566, 819, 984, 1046, 1242, 1383, 1800
TscAI	CASTG	3 cut(s)	283, 817, 1320
TseFI	GTSAC	3 cut(s)	634, 971, 1654
TseI	GCWGC	4 cut(s)	475, 1628, 1730, 1742
Tsp45I	GTSAC	3 cut(s)	634, 971, 1654
TspDTI	ATGAA	5 cut(s)	91, 447, 859, 1281, 1629
TspRI	CASTG	3 cut(s)	283, 817, 1320
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	1461
VspI	ATTAAT	1 cut(s)	1046
XapI	RAATTY	4 cut(s)	618, 690, 866, 903
XceI	RCATGY	1 cut(s)	750
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	2 cut(s)	706, 1230
XspI	CTAG	3 cut(s)	908, 1485, 1529
ZrmI	AGTACT	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.