Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007010

Physical Location & Seq

Genomic Coordinates Reverse (-)

49983665 .. 49989882

Gene Structure 6218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0350700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTCGTTATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTTTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCTAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCTGCTAGTGCCGGTGCAGAGAATCACCAATATGAGCTCAAACTCGACCTTTTCGACAAGGTTAATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATTGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTACTGAAAGGAAGTGGGAAGACGCCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAAGACGAGGATCCTCCAGCAGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGCGGGATGGGCGGACTTGGCGGGATGGGCGGAATGGGCGGGATGGGCGGAATGGGCGGCATGGATTTCTCTAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTTTCGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGTGATGATGATCAAGAAGTTTCCAAGCCAGGAGAACCGGATGCTGCCAAGAGTGAAGCTGATCCCTCAGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006090 GO:0006098 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022607 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0048046 GO:0050896 GO:0051156 GO:0051186 GO:0051259 GO:0051260 GO:0055044 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0072524 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

249

Amino Acids

25.93

Weight (kDa)

4.42

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	9.8e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11670 AT5G25880 AT5G25880 AT5G25880
fragaria_vesca	FvH4_2g35330 FvH4_2g35330 FvH4_2g35330
malus_domestica	MD08G1111500.v1.1 MD15G1091000.v1.1
prunus_persica	Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1 Prupe.1G445400_v2.0.a1
pyrus_communis	pycom08g09260 pycom15g08500
rosa_chinensis	RchiOBHm_Chr6g0306591
rosa_laevigata	RLG00000010782
rosa_multiflora	Rmu_sc0017624.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161630
rosa_rugosa	Rorug06G0350700 Rorug06G0350800
rosa_samantha	Rh6AG463100 Rh6BG437800
rosa_wichuraiana	Rw6G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AciI	CCGC	8 cut(s)	293, 429, 438, 447, 456, 465, 474, 483
AclWI	GGATC	3 cut(s)	335, 348, 704
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	37, 353
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	5 cut(s)	94, 157, 268, 707, 734
AluI	AGCT	5 cut(s)	94, 157, 268, 707, 734
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	3 cut(s)	335, 348, 704
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	350, 692, 734
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	27, 28
AsuHPI	GGTGA	7 cut(s)	31, 137, 425, 530, 581, 632, 647
AsuII	TTCGAA	1 cut(s)	548
AxyI	CCTNAGG	2 cut(s)	15, 715
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	31, 159
BbsI	GAAGAC	2 cut(s)	293, 339
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	362, 679, 721
BccI	CCATC	6 cut(s)	427, 445, 463, 532, 583, 617
BciT130I	CCWGG	1 cut(s)	678
BclI	TGATCA	1 cut(s)	658
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	5 cut(s)	293, 351, 484, 693, 735
BlsI	GCNGC	5 cut(s)	294, 352, 485, 694, 736
Bme1390I	CCNGG	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	2 cut(s)	29, 342
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	4 cut(s)	61, 409, 679, 746
BpiI	GAAGAC	2 cut(s)	293, 339
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse21I	CCTNAGG	2 cut(s)	15, 715
Bse3DI	GCAATG	2 cut(s)	429, 636
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	6 cut(s)	438, 456, 474, 543, 594, 694
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	37, 353
BseMI	GCAATG	2 cut(s)	429, 636
BseMII	CTCAG	2 cut(s)	6, 729
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	362, 679, 721
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	132, 686
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	37, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 159
Bsp143I	GATC	3 cut(s)	340, 658, 709
BspACI	CCGC	8 cut(s)	293, 429, 438, 447, 456, 465, 474, 483
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 728
BspLI	GGNNCC	2 cut(s)	29, 342
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	335, 348, 704
BspT104I	TTCGAA	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	429, 636
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	340, 658, 709
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	508, 559, 610
BstDEI	CTNAG	3 cut(s)	15, 84, 715
BstF5I	GGATG	6 cut(s)	438, 456, 474, 543, 594, 694
BstKTI	GATC	3 cut(s)	343, 661, 712
BstMBI	GATC	3 cut(s)	340, 658, 709
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 356, 435, 444, 453, 462, 471, 480
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	362, 679, 721
BstV2I	GAAGAC	2 cut(s)	293, 339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 715
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	6 cut(s)	438, 456, 474, 543, 594, 694
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	508, 559, 610
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	2 cut(s)	89, 298
CviAII	CATG	8 cut(s)	367, 382, 406, 487, 511, 562, 613, 747
CviJI	RGCY	8 cut(s)	29, 94, 100, 157, 268, 676, 707, 734
CviKI_1	RGCY	8 cut(s)	29, 94, 100, 157, 268, 676, 707, 734
DdeI	CTNAG	3 cut(s)	15, 84, 715
DpnI	GATC	3 cut(s)	342, 660, 711
DpnII	GATC	3 cut(s)	340, 658, 709
EciI	GGCGGA	3 cut(s)	453, 471, 489
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	31, 159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 715
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	31, 159
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	8 cut(s)	370, 385, 409, 490, 514, 565, 616, 750
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	8 cut(s)	366, 381, 405, 486, 510, 561, 612, 746
FauI	CCCGC	3 cut(s)	422, 440, 458
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	5 cut(s)	293, 351, 484, 693, 735
FokI	GGATG	6 cut(s)	445, 463, 481, 550, 601, 701
FriOI	GRGCYC	2 cut(s)	31, 159
Fsp4HI	GCNGC	5 cut(s)	293, 351, 484, 693, 735
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	5 cut(s)	293, 351, 484, 693, 735
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	132, 686
HgaI	GACGC	2 cut(s)	89, 298
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	8 cut(s)	370, 385, 409, 490, 514, 565, 616, 750
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	4, 142
HpaII	CCGG	2 cut(s)	132, 686
HphI	GGTGA	7 cut(s)	31, 137, 425, 530, 581, 632, 647
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	4 cut(s)	14, 391, 598, 662
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	98, 235, 515, 566
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	137, 422, 629, 737
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 356, 435, 444, 453, 462, 471, 480
HpyF3I	CTNAG	3 cut(s)	15, 84, 715
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	8 cut(s)	370, 385, 409, 490, 514, 565, 616, 750
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	340, 658, 709
Lsp1109I	GCAGC	3 cut(s)	362, 679, 721
LweI	GCATC	4 cut(s)	61, 409, 679, 746
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	3 cut(s)	342, 660, 711
MboI	GATC	3 cut(s)	340, 658, 709
MboII	GAAGA	3 cut(s)	109, 298, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	31, 159
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	2 cut(s)	90, 183
MslI	CAYNNNNRTG	2 cut(s)	150, 371
MspI	CCGG	2 cut(s)	132, 686
MspR9I	CCNGG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	8 cut(s)	80, 356, 435, 444, 453, 462, 471, 480
NdeII	GATC	3 cut(s)	340, 658, 709
NlaIII	CATG	8 cut(s)	370, 385, 409, 490, 514, 565, 616, 750
NlaIV	GGNNCC	2 cut(s)	29, 342
NmuCI	GTSAC	1 cut(s)	635
NspV	TTCGAA	1 cut(s)	548
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	294, 352, 485, 694, 736
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	29, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	150, 371
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	90, 183
SatI	GCNGC	5 cut(s)	293, 351, 484, 693, 735
Sau3AI	GATC	3 cut(s)	340, 658, 709
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	2 cut(s)	31, 159
SfaNI	GCATC	4 cut(s)	61, 409, 679, 746
SfuI	TTCGAA	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	150, 371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	8 cut(s)	293, 429, 438, 447, 456, 465, 474, 483
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	5 cut(s)	165, 174, 392, 548, 599
TasI	AATT	1 cut(s)	395
TauI	GCSGC	2 cut(s)	295, 486
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	90, 183
Tru9I	TTAA	2 cut(s)	90, 183
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	3 cut(s)	350, 692, 734
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	1 cut(s)	103
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.