Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016478

Physical Location & Seq

Genomic Coordinates Reverse (-)

5774076 .. 5774378

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCAGAACATCAACCGTGGTCCTGAAATTTTGAGTGTACAAATAACTGAATTTCCGTGTTCGGCATTGCAGGCCAGGCCATTGCTCACTCAAGCGCTGGAAGATGGCAATTTCGATGCACTTACTGATCCAAGATTGGAGAAAAACTACAAGAAGAATGAGATGGCTCGAATGGTTGCTTGCGCCACTGCTTGCGTACGGCATTCAGCATGGCTTCGACCGCGAATGAGCCAAGTAATTCCCTCTTTCATGTTTCACAATTATAGCTTACTGACAGTAATGTATTTGAAACAAAGCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

8.96

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32710
fragaria_vesca	FvH4_2g36150
malus_domestica	MD15G1098100.v1.1
prunus_persica	Prupe.1G452900_v2.0.a1 Prupe.1G452900_v2.0.a1
pyrus_communis	pycom15g08990
rosa_chinensis	RchiOBHm_Chr6g0305721
rosa_laevigata	RLG00000010865
rosa_multiflora	Rmu_sc0001809.1_g000037
rosa_roxburghii	Rroxscaffold_7G00162410
rosa_rugosa	Rorug06G0343500
rosa_samantha	Rh6BG446400 Rh6CG468900
rosa_wichuraiana	Rw6G039690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	223, 299
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	27, 50
AfaI	GTAC	2 cut(s)	39, 198
AfeI	AGCGCT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
AlwI	GGATC	1 cut(s)	122
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	2 cut(s)	72, 77
ApoI	RAATTY	2 cut(s)	27, 50
AspLEI	GCGC	3 cut(s)	97, 185, 299
AspS9I	GGNCC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	20
BccI	CCATC	2 cut(s)	98, 157
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	65, 80
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	16
BseMI	GCAATG	2 cut(s)	65, 80
Bsh1236I	CGCG	2 cut(s)	223, 299
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	74, 79
BsiEI	CGRYCG	1 cut(s)	221
BsiWI	CGTACG	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	74, 79
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	74, 79
BspFNI	CGCG	2 cut(s)	223, 299
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	65, 80
BsrGI	TGTACA	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	17, 277
BstAUI	TGTACA	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	72, 181, 193
BstDSI	CCRYGG	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	223, 299
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	3 cut(s)	97, 185, 299
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 76, 220
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	223, 299
BsuRI	GGCC	2 cut(s)	74, 79
BtgI	CCRYGG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	72, 181, 193
CfoI	GCGC	3 cut(s)	97, 185, 299
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	38, 197
CviAII	CATG	2 cut(s)	210, 250
CviJI	RGCY	6 cut(s)	74, 79, 167, 214, 231, 267
CviKI_1	RGCY	6 cut(s)	74, 79, 167, 214, 231, 267
CviQI	GTAC	2 cut(s)	38, 197
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	213, 253
FaiI	YATR	3 cut(s)	211, 251, 264
FatI	CATG	2 cut(s)	209, 249
GlaI	GCGC	3 cut(s)	96, 184, 298
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	74, 79
HhaI	GCGC	3 cut(s)	97, 185, 299
Hin1II	CATG	2 cut(s)	213, 253
Hin6I	GCGC	3 cut(s)	95, 183, 297
HinP1I	GCGC	3 cut(s)	95, 183, 297
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	17, 277
HpyCH4V	TGCA	3 cut(s)	4, 70, 119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 76, 220
Hsp92II	CATG	2 cut(s)	213, 253
HspAI	GCGC	3 cut(s)	95, 183, 297
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	36, 56, 61, 83, 88
LweI	GCATC	1 cut(s)	106
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	113, 166
MluCI	AATT	5 cut(s)	27, 50, 109, 237, 259
MnlI	CCTC	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	223, 299
MwoI	GCNNNNNNNGC	3 cut(s)	71, 76, 220
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	213, 253
PctI	GAATGC	1 cut(s)	202
Pfl23II	CGTACG	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspLI	CGTACG	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	39, 198
RsaNI	GTAC	2 cut(s)	38, 197
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	1 cut(s)	269
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	5 cut(s)	27, 50, 109, 237, 259
SsiI	CCGC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	17, 277
TaqI	TCGA	3 cut(s)	114, 169, 217
TasI	AATT	5 cut(s)	27, 50, 109, 237, 259
TatI	WGTACW	1 cut(s)	37
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	27, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.