Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016478

Physical Location & Seq

Genomic Coordinates Forward (+)

49526797 .. 49527282

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATACGATAACAAGCATGGTGACTGGAAAGCCAGTGGTGATCTTCAGCAGGAGCACATGTTGCATGAGCCACTCCATCAGGTCACTGATAGCAGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGGGTACTAGTTGAGCAGCTGAAATGCGAGCCAAGTGTGCCAGTTGTTTTCATAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCCAGGCTCCTAGCGGCCAATGCCATTTGGGTTTGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

7.73

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	13 - 76	4.4e-10	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32710
fragaria_vesca	FvH4_2g36150
malus_domestica	MD15G1098100.v1.1
prunus_persica	Prupe.1G452900_v2.0.a1 Prupe.1G452900_v2.0.a1
pyrus_communis	pycom15g08990
rosa_chinensis	RchiOBHm_Chr6g0305721
rosa_laevigata	RLG00000010865
rosa_multiflora	Rmu_sc0001809.1_g000037
rosa_roxburghii	Rroxscaffold_7G00162410
rosa_rugosa	Rorug06G0343500
rosa_samantha	Rh6BG446400 Rh6CG468900
rosa_wichuraiana	Rw6G039690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	101, 165
AflIII	ACRYGT	1 cut(s)	59
AhlI	ACTAGT	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	127, 178, 236, 271
AluI	AGCT	4 cut(s)	127, 178, 236, 271
Alw21I	GWGCWC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	214, 291
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	34, 52
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	3 cut(s)	167, 287, 316
BisI	GCNGC	2 cut(s)	176, 291
BlsI	GCNGC	2 cut(s)	177, 292
Bme1390I	CCNGG	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bse1I	ACTGG	3 cut(s)	31, 35, 200
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	3 cut(s)	31, 35, 200
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	216, 293
BsiHKAI	GWGCWC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	216, 293
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	42, 130
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	216, 293
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	31, 35, 200
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	42, 130
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	118, 222
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	188, 273
BstDEI	CTNAG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	2 cut(s)	45, 133
BstMBI	GATC	2 cut(s)	42, 130
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 196, 296
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	216, 293
BtsIMutI	CAGTG	3 cut(s)	42, 86, 123
Cac8I	GCNNGC	2 cut(s)	188, 273
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	100, 164
CviAII	CATG	4 cut(s)	19, 60, 67, 247
CviQI	GTAC	2 cut(s)	100, 164
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	44, 132
DpnII	GATC	2 cut(s)	42, 130
EaeI	YGGCCR	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	278
FaeI	CATG	4 cut(s)	22, 63, 70, 250
FaiI	YATR	6 cut(s)	20, 61, 68, 123, 212, 248
FatI	CATG	4 cut(s)	18, 59, 66, 246
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	176, 291
Fsp4HI	GCNGC	2 cut(s)	176, 291
FspBI	CTAG	3 cut(s)	167, 287, 316
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	176, 291
HaeIII	GGCC	2 cut(s)	216, 293
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	22, 63, 70, 250
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	109
HphI	GGTGA	2 cut(s)	34, 52
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	118, 222
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 196, 296
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	22, 63, 70, 250
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	42, 130
LmnI	GCTCC	3 cut(s)	54, 233, 288
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	3 cut(s)	167, 287, 316
MaeIII	GTNAC	2 cut(s)	22, 84
MalI	GATC	2 cut(s)	44, 132
MboI	GATC	2 cut(s)	42, 130
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	137, 280
MnlI	CCTC	2 cut(s)	153, 263
MspA1I	CMGCKG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	63, 196, 296
NdeII	GATC	2 cut(s)	42, 130
NlaIII	CATG	4 cut(s)	22, 63, 70, 250
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	2 cut(s)	22, 84
NspI	RCATGY	1 cut(s)	63
PagI	TCATGA	1 cut(s)	246
PciI	ACATGT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	177, 292
PscI	ACATGT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	101, 165
RsaNI	GTAC	2 cut(s)	100, 164
SatI	GCNGC	2 cut(s)	176, 291
Sau3AI	GATC	2 cut(s)	42, 130
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	6 cut(s)	86, 129, 180, 238, 246, 273
SpeI	ACTAGT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	3 cut(s)	167, 287, 316
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	118, 222
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	3 cut(s)	42, 93, 123
TseFI	GTSAC	2 cut(s)	22, 84
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	22, 84
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	3 cut(s)	42, 93, 123
XceI	RCATGY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	167, 287, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.