Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016478

Physical Location & Seq

Genomic Coordinates Forward (+)

63647454 .. 63649543

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGACATCTCAAATGGAACATTCACCTATGATCAATTGTTGGTGGCAACAAATGGGTTTTCAGAGGCCAACCTTCTTGGACAAGGCGGTTTTGGGTATGTCCACAAGGGAGTACTTCCAGGTGGGAAGGAAGTTGCAGTGAAGCAGTTAAAGACAGGAAGCCGGCAAGGGGAGCGAGAGTTTCATGCTGAGGTTGACATCATTAGCCGGGTGCATCACAAGCATCTAGTTTCATTGGTAGGGCACTGTATCAAGGGGGCTGAGAGATTGCTTGTATATGAGTTTGTTCCAAATAACACCTTAGAATTCCACTTACATGGATTAGGACAGACTGTTTTGGAGTGGGAAATAAGATTGAAAATAGCTACTGGCTCTGCAAAAGGACTAGCATATCTCCATGAAGATTGCAATCCAAAAATTATTCATCGTGATATCAAGGCATCTAATATTCTTGTGGATCAGAAATTTGAAGCAAAGGTTTCTGACTTTGGACTGGCCAAATCGTTCTCTGGTACCAACACTCACATTACTCACCTTTCCACTCGAGTAGTGGGAACATTTGGGTACCTTGCTCCAGAGTACGCATCAAGCGGTAAGGTCACAGAGAAATCAGATGTGTATTCATACGGGGTTGTACTCCTAGAACTTATAACTGGACGTCCGCCTATAAGTACAATAGATTCCTTGAGGAATGAGGGTCTGGTTCAGTGGGCAAGGCCATTGCTCACTCAAGCCCTGGAAGATGGTGCTTTTGATGCTCTTGTGGATCCACGATTGGAGACAAATTACAAGAAGAATGAGATGGCTAGAATGGTCACTTGTGCTGCTGCGTGTGTTCGACATTCAGCATGGCTTCGACCAAGAATGAGCCAGATAGTCCATGCTTTAGAAGGAGTTGCTTCGTTGATGGATCTTCAGGAAGGAGTTACACCAGGAAACAGTGCGGTATACAATTGCTTGGGGAATGCACACTATAACTCCCGGCAATATGAGGAAGATTTGAAGAATTCCACGGTAACAATGCCAAGTCAAGAGTATGGCATTAGTAGAACACTGCAACTACCAGCGAGTATGGTCTTAATCCCTCAAGCTCAAGCAGCGAAACCCGGCAAACAATCTGAAGTTAAGATAACAAAGTTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

41.88

Weight (kDa)

7.28

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 227	6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 296	1.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32710
fragaria_vesca	FvH4_2g36150
malus_domestica	MD15G1098100.v1.1
prunus_persica	Prupe.1G452900_v2.0.a1 Prupe.1G452900_v2.0.a1
pyrus_communis	pycom15g08990
rosa_chinensis	RchiOBHm_Chr6g0305721
rosa_laevigata	RLG00000010865
rosa_multiflora	Rmu_sc0001809.1_g000037
rosa_roxburghii	Rroxscaffold_7G00162410
rosa_rugosa	Rorug06G0343500
rosa_samantha	Rh6BG446400 Rh6CG468900
rosa_wichuraiana	Rw6G039690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AatII	GACGTC	1 cut(s)	661
Acc65I	GGTACC	2 cut(s)	512, 564
AccB1I	GGYRCC	2 cut(s)	512, 564
AccI	GTMKAC	1 cut(s)	948
AciI	CCGC	4 cut(s)	87, 591, 662, 944
AclWI	GGATC	4 cut(s)	465, 761, 774, 918
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	305, 464, 1006
AcuI	CTGAAG	2 cut(s)	899, 1140
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	6 cut(s)	114, 514, 566, 581, 636, 673
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	358, 470, 1003
AjnI	CCWGG	3 cut(s)	118, 735, 931
AluBI	AGCT	2 cut(s)	365, 1091
AluI	AGCT	2 cut(s)	365, 1091
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	4 cut(s)	465, 761, 774, 918
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	3 cut(s)	66, 495, 716
ApeKI	GCWGC	3 cut(s)	824, 827, 1097
ApoI	RAATTY	3 cut(s)	305, 464, 1006
Asp718I	GGTACC	2 cut(s)	512, 564
AsuC2I	CCSGG	3 cut(s)	209, 982, 1107
AsuHPI	GGTGA	2 cut(s)	16, 524
AvaI	CYCGRG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	2 cut(s)	512, 564
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	811, 814, 1109
BccI	CCATC	3 cut(s)	737, 796, 901
BciT130I	CCWGG	3 cut(s)	120, 737, 933
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	209, 982, 1107
BcoDI	GTCTC	1 cut(s)	773
BfaI	CTAG	5 cut(s)	227, 386, 641, 807, 1144
BisI	GCNGC	3 cut(s)	825, 828, 1098
BlsI	GCNGC	3 cut(s)	826, 829, 1099
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	6 cut(s)	120, 209, 737, 933, 982, 1107
BmeT110I	CYCGRG	1 cut(s)	543
BmiI	GGNNCC	3 cut(s)	514, 566, 768
BmrFI	CCNGG	6 cut(s)	120, 209, 737, 933, 982, 1107
BmsI	GCATC	5 cut(s)	223, 232, 449, 593, 745
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	4 cut(s)	706, 714, 1071, 1077
BpuMI	CCSGG	3 cut(s)	209, 982, 1107
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	735, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 962, 992
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	373, 498, 658
Bse3DI	GCAATG	1 cut(s)	719
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	120, 737, 933
BseDI	CCNNGG	2 cut(s)	735, 1011
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	180, 252
BseNI	ACTGG	3 cut(s)	373, 498, 658
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	811, 814, 1109
BshFI	GGCC	3 cut(s)	68, 497, 718
BshNI	GGYRCC	2 cut(s)	512, 564
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	4 cut(s)	163, 208, 982, 1107
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	3 cut(s)	68, 497, 718
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	31, 457, 766, 910
BspACI	CCGC	4 cut(s)	87, 591, 662, 944
BspANI	GGCC	3 cut(s)	68, 497, 718
BspCNI	CTCAG	2 cut(s)	181, 253
BspLI	GGNNCC	3 cut(s)	514, 566, 768
BspPI	GGATC	4 cut(s)	465, 761, 774, 918
BspT107I	GGYRCC	2 cut(s)	512, 564
BsrDI	GCAATG	1 cut(s)	719
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	373, 498, 658
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	735, 1011
BssMI	GATC	4 cut(s)	31, 457, 766, 910
BssNAI	GTATAC	1 cut(s)	949
BssNI	GRCGYC	1 cut(s)	658
Bst1107I	GTATAC	1 cut(s)	949
Bst2UI	CCWGG	3 cut(s)	120, 737, 933
Bst4CI	ACNGT	4 cut(s)	248, 334, 941, 1015
BstACI	GRCGYC	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	189, 261, 301
BstDSI	CCRYGG	1 cut(s)	1011
BstKTI	GATC	4 cut(s)	34, 460, 769, 913
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	4 cut(s)	31, 457, 766, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 220, 755, 1097
BstNI	CCWGG	3 cut(s)	120, 737, 933
BstSCI	CCNGG	6 cut(s)	118, 207, 735, 931, 980, 1105
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	811, 814, 1109
BstX2I	RGATCY	2 cut(s)	766, 910
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	2 cut(s)	766, 910
BstZ17I	GTATAC	1 cut(s)	949
BsuRI	GGCC	3 cut(s)	68, 497, 718
BtgI	CCRYGG	1 cut(s)	1011
BtsI	GCAGTG	2 cut(s)	144, 1052
BtsIMutI	CAGTG	5 cut(s)	144, 244, 713, 946, 1052
Cac8I	GCNNGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	162
Csp6I	GTAC	6 cut(s)	113, 513, 565, 580, 635, 672
CviAII	CATG	5 cut(s)	185, 317, 398, 849, 881
CviQI	GTAC	6 cut(s)	113, 513, 565, 580, 635, 672
DdeI	CTNAG	3 cut(s)	189, 261, 301
DpnI	GATC	4 cut(s)	33, 459, 768, 912
DpnII	GATC	4 cut(s)	31, 457, 766, 910
EaeI	YGGCCR	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	899, 1140
Eco88I	CYCGRG	1 cut(s)	543
EcoRI	GAATTC	2 cut(s)	305, 1006
EcoRII	CCWGG	3 cut(s)	118, 735, 931
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	5 cut(s)	188, 320, 401, 852, 884
FatI	CATG	5 cut(s)	184, 316, 397, 848, 880
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	3 cut(s)	825, 828, 1098
Fsp4HI	GCNGC	3 cut(s)	825, 828, 1098
FspBI	CTAG	5 cut(s)	227, 386, 641, 807, 1144
GluI	GCNGC	3 cut(s)	825, 828, 1098
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	68, 497, 718
HapII	CCGG	4 cut(s)	163, 208, 982, 1107
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	5 cut(s)	188, 320, 401, 852, 884
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	680
HpaII	CCGG	4 cut(s)	163, 208, 982, 1107
HphI	GGTGA	2 cut(s)	16, 524
Hpy166II	GTNNAC	3 cut(s)	103, 196, 949
Hpy188I	TCNGA	5 cut(s)	64, 462, 484, 613, 1120
Hpy188III	TCNNGA	4 cut(s)	428, 575, 917, 1031
Hpy8I	GTNNAC	3 cut(s)	103, 196, 949
HpyAV	CCTTC	4 cut(s)	83, 121, 884, 914
HpyCH4III	ACNGT	4 cut(s)	248, 334, 941, 1015
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	6 cut(s)	137, 214, 377, 408, 968, 1057
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 220, 755, 1097
HpyF3I	CTNAG	3 cut(s)	189, 261, 301
HpySE526I	ACGT	1 cut(s)	658
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	5 cut(s)	188, 320, 401, 852, 884
KpnI	GGTACC	2 cut(s)	516, 568
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 457, 766, 910
LmnI	GCTCC	2 cut(s)	172, 577
Lsp1109I	GCAGC	3 cut(s)	811, 814, 1109
LweI	GCATC	5 cut(s)	223, 232, 449, 593, 745
MaeI	CTAG	5 cut(s)	227, 386, 641, 807, 1144
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	5 cut(s)	598, 814, 925, 1015, 1137
MalI	GATC	4 cut(s)	33, 459, 768, 912
MboI	GATC	4 cut(s)	31, 457, 766, 910
MboII	GAAGA	6 cut(s)	413, 752, 805, 905, 1007, 1015
MfeI	CAATTG	2 cut(s)	35, 952
MflI	RGATCY	2 cut(s)	766, 910
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	7 cut(s)	35, 305, 417, 464, 784, 952, 1006
MluNI	TGGCCA	1 cut(s)	497
MnlI	CCTC	6 cut(s)	58, 184, 681, 688, 985, 1095
Mox20I	TGGCCA	1 cut(s)	497
MroNI	GCCGGC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	3 cut(s)	149, 1079, 1125
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	4 cut(s)	163, 208, 982, 1107
MspR9I	CCNGG	6 cut(s)	120, 209, 737, 933, 982, 1107
MunI	CAATTG	2 cut(s)	35, 952
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	3 cut(s)	120, 737, 933
MwoI	GCNNNNNNNGC	4 cut(s)	172, 220, 755, 1097
NaeI	GCCGGC	1 cut(s)	164
NciI	CCSGG	3 cut(s)	209, 982, 1107
NdeII	GATC	4 cut(s)	31, 457, 766, 910
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	5 cut(s)	188, 320, 401, 852, 884
NlaIV	GGNNCC	3 cut(s)	514, 566, 768
NmuCI	GTSAC	2 cut(s)	598, 814
PaeR7I	CTCGAG	1 cut(s)	543
PctI	GAATGC	1 cut(s)	970
PdiI	GCCGGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	3 cut(s)	826, 829, 1099
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	118, 735, 931
PspGI	CCWGG	3 cut(s)	118, 735, 931
PspN4I	GGNNCC	3 cut(s)	514, 566, 768
PspXI	VCTCGAGB	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	766, 910
RsaI	GTAC	6 cut(s)	114, 514, 566, 581, 636, 673
RsaNI	GTAC	6 cut(s)	113, 513, 565, 580, 635, 672
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	149, 1079, 1125
SatI	GCNGC	3 cut(s)	825, 828, 1098
Sau3AI	GATC	4 cut(s)	31, 457, 766, 910
ScaI	AGTACT	1 cut(s)	114
ScrFI	CCNGG	6 cut(s)	120, 209, 737, 933, 982, 1107
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	5 cut(s)	223, 232, 449, 593, 745
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	5 cut(s)	543, 685, 729, 1086, 1092
SmoI	CTYRAG	5 cut(s)	543, 685, 729, 1086, 1092
Sse9I	AATT	7 cut(s)	35, 305, 417, 464, 784, 952, 1006
SsiI	CCGC	4 cut(s)	87, 591, 662, 944
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	5 cut(s)	227, 386, 641, 807, 1144
StyD4I	CCNGG	6 cut(s)	118, 207, 735, 931, 980, 1105
TaaI	ACNGT	4 cut(s)	248, 334, 941, 1015
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	3 cut(s)	544, 838, 856
TasI	AATT	7 cut(s)	35, 305, 417, 464, 784, 952, 1006
TatI	WGTACW	3 cut(s)	112, 634, 671
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	3 cut(s)	149, 1079, 1125
Tru9I	TTAA	3 cut(s)	149, 1079, 1125
TscAI	CASTG	5 cut(s)	144, 251, 713, 946, 1059
TseFI	GTSAC	2 cut(s)	598, 814
TseI	GCWGC	3 cut(s)	824, 827, 1097
Tsp45I	GTSAC	2 cut(s)	598, 814
TspDTI	ATGAA	5 cut(s)	173, 222, 413, 414, 612
TspRI	CASTG	5 cut(s)	144, 251, 713, 946, 1059
XapI	RAATTY	3 cut(s)	305, 464, 1006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	948
XspI	CTAG	5 cut(s)	227, 386, 641, 807, 1144
ZraI	GACGTC	1 cut(s)	659
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.