Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016478

Physical Location & Seq

Genomic Coordinates Reverse (-)

66191191 .. 66192664

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG446400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAAAATCCATGGTTACTGACATCATTCTTGGCTGCAGGCAATCCAAAAATCATTCATCGTGATATCAAGGCATCTAATATTCTTGTGGATCAGAAGTTTGAAGCAAAGGTTTCTGACTTTGGACTGGCCAAATCGTTCTCTGGTACCAACACTCACATTACTCACCTTTCCACTCGAGTAGTGGGAACATTTGGGTACCTTGCTCCAGAGTACGCATCAAGCGGTAAGGTCACAGAGAAATCAGATGTGTATTCATACGGGGTTGTACTCCTAGAACTTATAACCGGACGTCCGCCTATCAGTACAATAGATTCCTTGAGGAATGAGGGTCTGGTTCAGTGGGCAAGGCCATTGCTCACTCAAGCCCTGGAAGATGGTGCTTTTGATGCTCTTGTGGATCCACGATTGGAGACAAATTACAACAAGAATGAGATGGCTAGAATGGTCGCTTGTGCTGCTGCTTGTGTTCGACAGTCAGCATGGCTTCGACCAAGAATGAGCCAGATAGTCCATGCTTTAGAAGGAGTTGCTTCGTTGATGGATCTTCGGGAAGGAGTTACACCAGGAAACAGTGCGGTATACAATTGCTTGGGGAATTCACATTATAACTCCCGGCAATATGAGGAAGATTTGAAGAATTCCACTGTAACAATGCCAAGTCAAGAGTATGGCATTAGTAGATACACTGAAACTACCAGTGAGTATGGTCTTAATCCCTCAGGCTCAAGCAGCGAAACCCGGCAAACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

27.63

Weight (kDa)

6.22

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 174	6.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 106	4.8e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32710
fragaria_vesca	FvH4_2g36150
malus_domestica	MD15G1098100.v1.1
prunus_persica	Prupe.1G452900_v2.0.a1 Prupe.1G452900_v2.0.a1
pyrus_communis	pycom15g08990
rosa_chinensis	RchiOBHm_Chr6g0305721
rosa_laevigata	RLG00000010865
rosa_multiflora	Rmu_sc0001809.1_g000037
rosa_roxburghii	Rroxscaffold_7G00162410
rosa_rugosa	Rorug06G0343500
rosa_samantha	Rh6BG446400 Rh6CG468900
rosa_wichuraiana	Rw6G039690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	284, 609
AatII	GACGTC	1 cut(s)	295
Acc65I	GGTACC	2 cut(s)	146, 198
AccB1I	GGYRCC	2 cut(s)	146, 198
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	3 cut(s)	225, 296, 578
AclWI	GGATC	4 cut(s)	99, 395, 408, 552
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	598, 640
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	5 cut(s)	148, 200, 215, 270, 307
AgsI	TTSAA	2 cut(s)	104, 637
AjnI	CCWGG	2 cut(s)	369, 565
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	4 cut(s)	99, 395, 408, 552
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	129, 350
ApeKI	GCWGC	4 cut(s)	35, 458, 461, 732
ApoI	RAATTY	2 cut(s)	598, 640
Asp718I	GGTACC	2 cut(s)	146, 198
AsuC2I	CCSGG	2 cut(s)	616, 742
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	177
AxyI	CCTNAGG	1 cut(s)	721
BalI	TGGCCA	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	400
BanI	GGYRCC	2 cut(s)	146, 198
BbvI	GCAGC	4 cut(s)	22, 445, 448, 744
BccI	CCATC	3 cut(s)	371, 430, 535
BciT130I	CCWGG	2 cut(s)	371, 567
BcnI	CCSGG	2 cut(s)	616, 742
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	275, 441
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	4 cut(s)	36, 459, 462, 733
BlsI	GCNGC	4 cut(s)	37, 460, 463, 734
Bme1390I	CCNGG	4 cut(s)	371, 567, 616, 742
BmeT110I	CYCGRG	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	148, 200, 402
BmrFI	CCNGG	4 cut(s)	371, 567, 616, 742
BmsI	GCATC	3 cut(s)	83, 227, 379
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	3 cut(s)	340, 348, 712
BpuMI	CCSGG	2 cut(s)	616, 742
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	11, 369
BsaWI	WCCGGW	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	132, 699
Bse21I	CCTNAGG	1 cut(s)	721
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	371, 567
BseDI	CCNNGG	2 cut(s)	11, 369
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	2 cut(s)	132, 699
BseXI	GCAGC	4 cut(s)	22, 445, 448, 744
BshFI	GGCC	2 cut(s)	131, 352
BshNI	GGYRCC	2 cut(s)	146, 198
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	288, 616, 742
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	131, 352
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	91, 400, 544
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	3 cut(s)	225, 296, 578
BspANI	GGCC	2 cut(s)	131, 352
BspCNI	CTCAG	1 cut(s)	734
BspLI	GGNNCC	3 cut(s)	148, 200, 402
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	4 cut(s)	99, 395, 408, 552
BspT107I	GGYRCC	2 cut(s)	146, 198
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	132, 699
BssECI	CCNNGG	2 cut(s)	11, 369
BssMI	GATC	3 cut(s)	91, 400, 544
BssNAI	GTATAC	1 cut(s)	583
BssNI	GRCGYC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	11
Bst1107I	GTATAC	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	371, 567
Bst4CI	ACNGT	3 cut(s)	477, 575, 649
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	721
BstDSI	CCRYGG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	94, 403, 547
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	91, 400, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 458, 732
BstNI	CCWGG	2 cut(s)	371, 567
BstSCI	CCNGG	4 cut(s)	369, 565, 614, 740
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	22, 445, 448, 744
BstX2I	RGATCY	2 cut(s)	400, 544
BstYI	RGATCY	2 cut(s)	400, 544
BstZ17I	GTATAC	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	131, 352
BtgI	CCRYGG	1 cut(s)	11
BtsIMutI	CAGTG	5 cut(s)	347, 580, 645, 687, 706
Cac8I	GCNNGC	1 cut(s)	40
Csp6I	GTAC	5 cut(s)	147, 199, 214, 269, 306
CviAII	CATG	3 cut(s)	12, 483, 515
CviJI	RGCY	8 cut(s)	35, 131, 352, 368, 440, 487, 504, 726
CviKI_1	RGCY	8 cut(s)	35, 131, 352, 368, 440, 487, 504, 726
CviQI	GTAC	5 cut(s)	147, 199, 214, 269, 306
DdeI	CTNAG	1 cut(s)	721
DpnI	GATC	3 cut(s)	93, 402, 546
DpnII	GATC	3 cut(s)	91, 400, 544
EaeI	YGGCCR	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	177
EcoRI	GAATTC	2 cut(s)	598, 640
EcoRII	CCWGG	2 cut(s)	369, 565
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	15, 486, 518
FatI	CATG	3 cut(s)	11, 482, 514
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	36, 459, 462, 733
Fsp4HI	GCNGC	4 cut(s)	36, 459, 462, 733
FspBI	CTAG	2 cut(s)	275, 441
GluI	GCNGC	4 cut(s)	36, 459, 462, 733
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	131, 352
HapII	CCGG	3 cut(s)	288, 616, 742
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	15, 486, 518
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	288, 616, 742
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	96, 118, 247, 755
Hpy188III	TCNNGA	4 cut(s)	62, 209, 551, 665
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	2 cut(s)	518, 548
HpyCH4III	ACNGT	3 cut(s)	477, 575, 649
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 458, 732
HpyF3I	CTNAG	1 cut(s)	721
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	15, 486, 518
KpnI	GGTACC	2 cut(s)	150, 202
Kzo9I	GATC	3 cut(s)	91, 400, 544
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	4 cut(s)	22, 445, 448, 744
LweI	GCATC	3 cut(s)	83, 227, 379
MaeI	CTAG	2 cut(s)	275, 441
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	4 cut(s)	15, 232, 559, 649
MalI	GATC	3 cut(s)	93, 402, 546
MboI	GATC	3 cut(s)	91, 400, 544
MboII	GAAGA	4 cut(s)	386, 539, 641, 649
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	2 cut(s)	400, 544
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	4 cut(s)	418, 586, 598, 640
MluNI	TGGCCA	1 cut(s)	131
MnlI	CCTC	4 cut(s)	315, 322, 619, 730
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	3 cut(s)	288, 616, 742
MspR9I	CCNGG	4 cut(s)	371, 567, 616, 742
MunI	CAATTG	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	371, 567
MwoI	GCNNNNNNNGC	3 cut(s)	389, 458, 732
NciI	CCSGG	2 cut(s)	616, 742
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	91, 400, 544
NlaIII	CATG	3 cut(s)	15, 486, 518
NlaIV	GGNNCC	3 cut(s)	148, 200, 402
NmuCI	GTSAC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	37, 460, 463, 734
PsiI	TTATAA	2 cut(s)	284, 609
Psp6I	CCWGG	2 cut(s)	369, 565
PspGI	CCWGG	2 cut(s)	369, 565
PspN4I	GGNNCC	3 cut(s)	148, 200, 402
PspXI	VCTCGAGB	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	400, 544
RsaI	GTAC	5 cut(s)	148, 200, 215, 270, 307
RsaNI	GTAC	5 cut(s)	147, 199, 214, 269, 306
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	4 cut(s)	36, 459, 462, 733
Sau3AI	GATC	3 cut(s)	91, 400, 544
ScrFI	CCNGG	4 cut(s)	371, 567, 616, 742
SetI	ASST	5 cut(s)	114, 171, 204, 234, 295
SfaNI	GCATC	3 cut(s)	83, 227, 379
SfcI	CTRYAG	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	177
SmlI	CTYRAG	4 cut(s)	177, 319, 363, 727
SmoI	CTYRAG	4 cut(s)	177, 319, 363, 727
Sse9I	AATT	4 cut(s)	418, 586, 598, 640
SsiI	CCGC	3 cut(s)	225, 296, 578
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	2 cut(s)	275, 441
StyD4I	CCNGG	4 cut(s)	369, 565, 614, 740
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	477, 575, 649
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	178, 472, 490
TasI	AATT	4 cut(s)	418, 586, 598, 640
TatI	WGTACW	2 cut(s)	268, 305
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	5 cut(s)	347, 580, 652, 694, 706
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	35, 458, 461, 732
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	17, 47, 246
TspRI	CASTG	5 cut(s)	347, 580, 652, 694, 706
XapI	RAATTY	2 cut(s)	598, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	2 cut(s)	275, 441
ZraI	GACGTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.