pycom15g09500
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013075
Physical Location & Seq
Forward (+)
6208677 .. 6210587
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGAAACCCGAACAGACCCCGTCCCAGCTCGACCGATCTCACGGTTCTTCCGGCAACCGGCGCAGCACGCGTTCGCAAGCAGCACCGGGCTGGAATCCGACTGACGAGCTCATCCTTGTGAACGAGGTCGCCGCCGTAGAGGGCGACTGCCTGAAAGCGCTGTCGTCGTTTCAGAAATGGACGATCATAGCTCAGAACTGCTCTGCTCTGGGCGTGTCGCGGACTTTGGACCAGTATCGCAGGAAGTGGGAAGCTTTGTTCGGCGAGTACAAGGGGATCAAGCAGTGGGAGGCGAAGTCCCGAGCTTCCGATTCGTACTGGGTTTTAGGAATTGAAAGAAGGAAGCGGAATGGGCTGCCGGAGAATTTTGACCAGGAGTTGTTTAGAGGGATTGATAAGCTTGTGAGGGTGAGGGGGAACCAATCGGATACAGACCCAGATAGTGATCCGGAGGATGAGGCGGAGAAGGAGCCTGATGTTGATTCAGAGCCAGAGTCAAAGAGGAGAAGACGTCGATCAACATCTCAGAAAAGCTGTCCTAGAGAAAATTCAATTAGAAGCTGCAAGATAGAAAAGCCTCAAGAAACCCATGCAGAAGGAAAGCCTCAAAAAACCCATGCAGAAGAAAAACCTGTAGGAAGCGGCTTGAAAGCAATTCCTCCGAAGAGCCTGGCAGAAGAACATCCTCAGAAGAGCTGTGTGAAGAAAAAGCTTACAAATAGTCAAAGAAAAGAGGAGGCAATCAGCATTGAAGAACAGGAGAAAATTGCGGCTATGAAATTGCATGAAAGTGCAGATTTAATCCGTGCTATCGTTACTGAGAAACCTGACCATGAGGCTGCTGGCGTGAAGAGCACCGGGGACCTCCAAACTGATTTTGTTAGGTGCCAAGGGGACCGGGTCATTGCATGCCTTGGCGATATTGTGAAGGCACTCGACCAGCTCCGTCATCTTGTCCAGGAATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

324

Amino Acids

36.38

Weight (kDa)

7.05

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 885
AccII CGCG 2 cut(s) 70, 220
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 6 cut(s) 132, 220, 346, 461, 642, 770
AclWI GGATC 2 cut(s) 284, 440
AcsI RAATTY 2 cut(s) 364, 547
AcyI GRCGYC 1 cut(s) 511
AfaI GTAC 2 cut(s) 269, 317
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 57
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 4 cut(s) 335, 552, 649, 752
AjnI CCWGG 3 cut(s) 372, 669, 957
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
Alw21I GWGCWC 2 cut(s) 111, 857
AlwI GGATC 2 cut(s) 284, 440
Ama87I CYCGRG 1 cut(s) 300
Aor13HI TCCGGA 1 cut(s) 448
Aor51HI AGCGCT 1 cut(s) 159
ApeKI GCWGC 5 cut(s) 63, 80, 355, 561, 839
ApoI RAATTY 2 cut(s) 364, 547
AspLEI GCGC 2 cut(s) 63, 160
AspS9I GGNCC 3 cut(s) 229, 862, 895
AsuC2I CCSGG 3 cut(s) 87, 859, 899
AsuHPI GGTGA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 3 cut(s) 229, 862, 895
BanI GGYRCC 1 cut(s) 885
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 2 cut(s) 111, 857
BbvI GCAGC 5 cut(s) 75, 92, 342, 548, 826
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 374, 671, 959
BciVI GTATCC 1 cut(s) 421
BcnI CCSGG 3 cut(s) 87, 859, 899
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 161
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 8 cut(s) 64, 81, 132, 356, 562, 643, 771, 840
BlsI GCNGC 8 cut(s) 65, 82, 133, 357, 563, 644, 772, 841
Bme1390I CCNGG 6 cut(s) 87, 374, 671, 859, 899, 959
Bme18I GGWCC 3 cut(s) 229, 862, 895
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 229, 862, 895
BmiI GGNNCC 5 cut(s) 419, 471, 863, 887, 896
BmrFI CCNGG 6 cut(s) 87, 374, 671, 859, 899, 959
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 3 cut(s) 87, 859, 899
BsaBI GATNNNNATC 2 cut(s) 444, 520
BsaHI GRCGYC 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 858, 889, 913
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 496, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 232, 323
Bse3DI GCAATG 1 cut(s) 903
Bse8I GATNNNNATC 2 cut(s) 444, 520
BseAI TCCGGA 1 cut(s) 448
BseBI CCWGG 3 cut(s) 374, 671, 959
BseDI CCNNGG 3 cut(s) 858, 889, 913
BseGI GGATG 3 cut(s) 111, 460, 682
BseJI GATNNNNATC 2 cut(s) 444, 520
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 4 cut(s) 206, 539, 701, 810
BseNI ACTGG 2 cut(s) 232, 323
BseRI GAGGAG 2 cut(s) 517, 749
BseXI GCAGC 5 cut(s) 75, 92, 342, 548, 826
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 2 cut(s) 70, 220
Bsh1285I CGRYCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 111, 857
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 7 cut(s) 51, 58, 86, 359, 449, 858, 898
BslFI GGGAC 4 cut(s) 7, 283, 875, 908
BslI CCNNNNNNNGG 1 cut(s) 57
BsmFI GGGAC 4 cut(s) 7, 283, 875, 908
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 111, 857
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 5 cut(s) 35, 183, 276, 445, 515
BspACI CCGC 6 cut(s) 132, 220, 346, 461, 642, 770
BspCNI CTCAG 4 cut(s) 205, 538, 700, 811
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 2 cut(s) 70, 220
BspLI GGNNCC 5 cut(s) 419, 471, 863, 887, 896
BspPI GGATC 2 cut(s) 284, 440
BspQI GCTCTTC 3 cut(s) 659, 686, 845
BspT107I GGYRCC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 232, 323
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 858, 889, 913
BssMI GATC 5 cut(s) 35, 183, 276, 445, 515
BssNI GRCGYC 1 cut(s) 511
BssT1I CCWWGG 2 cut(s) 889, 913
Bst2UI CCWGG 3 cut(s) 374, 671, 959
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 3 cut(s) 659, 686, 845
BstACI GRCGYC 1 cut(s) 511
BstC8I GCNNGC 4 cut(s) 68, 78, 844, 910
BstDEI CTNAG 4 cut(s) 192, 525, 687, 819
BstF5I GGATG 3 cut(s) 111, 460, 682
BstFNI CGCG 2 cut(s) 70, 220
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 63, 160
BstKTI GATC 5 cut(s) 38, 186, 279, 448, 518
BstMBI GATC 5 cut(s) 35, 183, 276, 445, 515
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 60, 67, 352, 852
BstNI CCWGG 3 cut(s) 374, 671, 959
BstNSI RCATGY 1 cut(s) 912
BstSCI CCNGG 6 cut(s) 85, 372, 669, 857, 897, 957
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 2 cut(s) 70, 220
BstV1I GCAGC 5 cut(s) 75, 92, 342, 548, 826
BstV2I GAAGAC 1 cut(s) 514
BsuI GTATCC 1 cut(s) 421
BtsCI GGATG 3 cut(s) 111, 460, 682
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 4 cut(s) 68, 78, 844, 910
CfoI GCGC 2 cut(s) 63, 160
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 3 cut(s) 229, 862, 895
Csp6I GTAC 2 cut(s) 268, 316
CviAII CATG 5 cut(s) 590, 617, 785, 833, 909
CviQI GTAC 2 cut(s) 268, 316
DdeI CTNAG 4 cut(s) 192, 525, 687, 819
DpnI GATC 5 cut(s) 37, 185, 278, 447, 517
DpnII GATC 5 cut(s) 35, 183, 276, 445, 515
Eam1104I CTCTTC 3 cut(s) 659, 686, 845
EarI CTCTTC 3 cut(s) 659, 686, 845
EciI GGCGGA 1 cut(s) 476
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 889, 913
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 3 cut(s) 229, 862, 895
Eco47III AGCGCT 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 372, 669, 957
EcoT14I CCWWGG 2 cut(s) 889, 913
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 889, 913
FaeI CATG 5 cut(s) 593, 620, 788, 836, 912
FaiI YATR 7 cut(s) 188, 591, 618, 776, 786, 834, 910
FaqI GGGAC 4 cut(s) 7, 283, 875, 908
FatI CATG 5 cut(s) 589, 616, 784, 832, 908
Fnu4HI GCNGC 8 cut(s) 64, 81, 132, 356, 562, 643, 771, 840
FokI GGATG 3 cut(s) 98, 467, 669
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 8 cut(s) 64, 81, 132, 356, 562, 643, 771, 840
FspBI CTAG 1 cut(s) 540
GlaI GCGC 2 cut(s) 62, 159
GluI GCNGC 8 cut(s) 64, 81, 132, 356, 562, 643, 771, 840
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 7 cut(s) 51, 58, 86, 359, 449, 858, 898
HhaI GCGC 2 cut(s) 63, 160
Hin1I GRCGYC 1 cut(s) 511
Hin1II CATG 5 cut(s) 593, 620, 788, 836, 912
Hin6I GCGC 2 cut(s) 61, 158
HinP1I GCGC 2 cut(s) 61, 158
HindIII AAGCTT 3 cut(s) 252, 398, 710
HinfI GANTC 4 cut(s) 94, 311, 482, 494
HpaII CCGG 7 cut(s) 51, 58, 86, 359, 449, 858, 898
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 9 cut(s) 99, 174, 195, 310, 427, 487, 528, 663, 690
Hpy188III TCNNGA 3 cut(s) 300, 449, 581
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 169, 516
HpyAV CCTTC 4 cut(s) 333, 460, 590, 922
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 6 cut(s) 564, 593, 620, 784, 794, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 67, 352, 852
HpyF3I CTNAG 4 cut(s) 192, 525, 687, 819
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 511
Hsp92II CATG 5 cut(s) 593, 620, 788, 836, 912
HspAI GCGC 2 cut(s) 61, 158
Kpn2I TCCGGA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 35, 183, 276, 445, 515
LguI GCTCTTC 3 cut(s) 659, 686, 845
LmnI GCTCC 2 cut(s) 469, 948
Lsp1109I GCAGC 5 cut(s) 75, 92, 342, 548, 826
MaeI CTAG 1 cut(s) 540
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 1 cut(s) 814
MalI GATC 5 cut(s) 37, 185, 278, 447, 517
MboI GATC 5 cut(s) 35, 183, 276, 445, 515
MboII GAAGA 9 cut(s) 39, 519, 635, 676, 689, 703, 715, 764, 862
MhlI GDGCHC 2 cut(s) 111, 857
MluCI AATT 7 cut(s) 330, 364, 547, 552, 654, 765, 779
MluI ACGCGT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 122
MroI TCCGGA 1 cut(s) 448
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 2 cut(s) 116, 789
MspI CCGG 7 cut(s) 51, 58, 86, 359, 449, 858, 898
MspR9I CCNGG 6 cut(s) 87, 374, 671, 859, 899, 959
MvaI CCWGG 3 cut(s) 374, 671, 959
MvnI CGCG 2 cut(s) 70, 220
MwoI GCNNNNNNNGC 4 cut(s) 60, 67, 352, 852
NciI CCSGG 3 cut(s) 87, 859, 899
NdeII GATC 5 cut(s) 35, 183, 276, 445, 515
NlaIII CATG 5 cut(s) 593, 620, 788, 836, 912
NlaIV GGNNCC 5 cut(s) 419, 471, 863, 887, 896
NspI RCATGY 1 cut(s) 912
PaeI GCATGC 1 cut(s) 912
PciSI GCTCTTC 3 cut(s) 659, 686, 845
PfeI GAWTC 3 cut(s) 94, 311, 482
PflFI GACNNNGTC 2 cut(s) 19, 899
PfoI TCCNGGA 1 cut(s) 957
PkrI GCNGC 8 cut(s) 65, 82, 133, 357, 563, 644, 772, 841
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 862
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 862
Psp6I CCWGG 3 cut(s) 372, 669, 957
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 3 cut(s) 372, 669, 957
PspN4I GGNNCC 5 cut(s) 419, 471, 863, 887, 896
PspPI GGNCC 3 cut(s) 229, 862, 895
PspPPI RGGWCCY 1 cut(s) 862
PsyI GACNNNGTC 2 cut(s) 19, 899
RsaI GTAC 2 cut(s) 269, 317
RsaNI GTAC 2 cut(s) 268, 316
RseI CAYNNNNRTG 2 cut(s) 116, 789
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 3 cut(s) 659, 686, 845
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 8 cut(s) 64, 81, 132, 356, 562, 643, 771, 840
Sau3AI GATC 5 cut(s) 35, 183, 276, 445, 515
Sau96I GGNCC 3 cut(s) 229, 862, 895
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 6 cut(s) 87, 374, 671, 859, 899, 959
SduI GDGCHC 2 cut(s) 111, 857
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 3 cut(s) 229, 862, 895
SmiMI CAYNNNNRTG 2 cut(s) 116, 789
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
SphI GCATGC 1 cut(s) 912
Sse9I AATT 7 cut(s) 330, 364, 547, 552, 654, 765, 779
SsiI CCGC 6 cut(s) 132, 220, 346, 461, 642, 770
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 6 cut(s) 85, 372, 669, 857, 897, 957
StyI CCWWGG 2 cut(s) 889, 913
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 514
TaqI TCGA 3 cut(s) 30, 514, 936
TaqII GACCGA 1 cut(s) 48
TasI AATT 7 cut(s) 330, 364, 547, 552, 654, 765, 779
TatI WGTACW 1 cut(s) 267
TauI GCSGC 3 cut(s) 134, 645, 773
TfiI GAWTC 3 cut(s) 94, 311, 482
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 1 cut(s) 290
TseI GCWGC 5 cut(s) 63, 80, 355, 561, 839
TspDTI ATGAA 3 cut(s) 17, 791, 801
TspGWI ACGGA 2 cut(s) 794, 935
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 2 cut(s) 19, 899
VpaK11BI GGWCC 3 cut(s) 229, 862, 895
XapI RAATTY 2 cut(s) 364, 547
XceI RCATGY 1 cut(s) 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 1 cut(s) 540
ZraI GACGTC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.