Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

6258313 .. 6260011

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGAAACGCATTGAGACGGAAGCTAGCTCGTTTTTGAGTTTGTCCGCGGCCTTGTCGTATGGGGCTGCTTCCATGGCGATGGTTTTTATCAATAAAGCAGTTATTATGGAGTACTCACATTCGATGACCCTTCTCACAATGCAGCAATTGGCAACTGCTTTGCTTATATATGTTGGTCGAAGATTGGGATACACGAGATCAAGAGGATTAGAGATGTCCATTGCGAAAAAGCTTCTCCCTGTGTCGCTTTTCTATAATGCTAATGTGGCGTTTGCGTTGGCCAGTTTGAAGGGAGTTAATATTCCCATGTATATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTGTAGCTGGATTCTTCTCAGGGAAGGGGAGACCCACAATACAGGTGTGTCTTTCAGTAATACTGACTGCAGTAGGGGTTCTGATAGCTGCACTCGGAGATTTTTCGTTTGACCTTTTTGGATATAGCATGGCCCTCACTTCCGTCTTTTTCCAGACCATGTACCTTGTTTTGGTGGAGAAATCTGGTGCTGAAGATGGGCTATCATCAGTTGAGATCGATGTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

193

Amino Acids

20.73

Weight (kDa)

9.01

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 175	1.1e-12	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 50, 338
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	3 cut(s)	116, 512, 573
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	5 cut(s)	26, 30, 235, 356, 437
AluI	AGCT	5 cut(s)	26, 30, 235, 356, 437
Alw26I	GTCTC	2 cut(s)	11, 373
AoxI	GGCC	3 cut(s)	51, 282, 480
ApeKI	GCWGC	3 cut(s)	68, 145, 437
AspS9I	GGNCC	1 cut(s)	481
AsuNHI	GCTAGC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	55, 157, 424
BccI	CCATC	2 cut(s)	76, 539
BciVI	GTATCC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	11, 373
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	51, 69, 146, 438
BlsI	GCNGC	4 cut(s)	52, 70, 147, 439
BmcAI	AGTACT	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	481
BmtI	GCTAGC	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	48, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	48, 75
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	55, 157, 424
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	53, 284, 482
BshVI	ATCGAT	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	2 cut(s)	11, 373
BsmBI	CGTCTC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	53, 284, 482
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	200, 564
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	48, 50, 338
BspANI	GGCC	3 cut(s)	53, 284, 482
BspCNI	CTCAG	1 cut(s)	380
BspDI	ATCGAT	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	48, 75
BssMI	GATC	2 cut(s)	200, 564
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	28, 342
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	2 cut(s)	48, 75
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	203, 567
BstMAI	GTCTC	2 cut(s)	11, 373
BstMBI	GATC	2 cut(s)	200, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 269, 346
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	55, 157, 424
BstXI	CCANNNNNNTGG	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	53, 284, 482
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	2 cut(s)	48, 75
BtgZI	GCGATG	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	28, 342
Cfr13I	GGNCC	1 cut(s)	481
Cfr42I	CCGCGG	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	567
Csp6I	GTAC	3 cut(s)	115, 511, 572
CviAII	CATG	4 cut(s)	76, 310, 478, 508
CviQI	GTAC	3 cut(s)	115, 511, 572
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	2 cut(s)	202, 566
DpnII	GATC	2 cut(s)	200, 564
EaeI	YGGCCR	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	79, 313, 481, 511
FatI	CATG	4 cut(s)	75, 309, 477, 507
Fnu4HI	GCNGC	4 cut(s)	51, 69, 146, 438
Fsp4HI	GCNGC	4 cut(s)	51, 69, 146, 438
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	4 cut(s)	51, 69, 146, 438
HaeIII	GGCC	3 cut(s)	53, 284, 482
Hin1II	CATG	4 cut(s)	79, 313, 481, 511
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	330, 360
Hpy188I	TCNGA	2 cut(s)	432, 446
Hpy188III	TCNNGA	2 cut(s)	204, 502
HpyAV	CCTTC	3 cut(s)	143, 286, 367
HpyCH4V	TGCA	4 cut(s)	145, 320, 419, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 269, 346
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	79, 313, 481, 511
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	200, 564
LpnPI	CCDG	7 cut(s)	255, 298, 342, 354, 377, 515, 519
Lsp1109I	GCAGC	3 cut(s)	55, 157, 424
MaeI	CTAG	1 cut(s)	27
MalI	GATC	2 cut(s)	202, 566
MboI	GATC	2 cut(s)	200, 564
MboII	GAAGA	3 cut(s)	195, 355, 554
MfeI	CAATTG	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	2 cut(s)	200, 494
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	77, 269, 346
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	200, 564
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	79, 313, 481, 511
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	52, 70, 147, 439
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	3 cut(s)	116, 512, 573
RsaNI	GTAC	3 cut(s)	115, 511, 572
RseI	CAYNNNNRTG	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	51, 69, 146, 438
Sau3AI	GATC	2 cut(s)	200, 564
Sau96I	GGNCC	1 cut(s)	481
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	1 cut(s)	324
SetI	ASST	8 cut(s)	28, 32, 237, 358, 396, 439, 465, 516
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	3 cut(s)	48, 50, 338
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	125, 181, 567
TasI	AATT	1 cut(s)	149
TatI	WGTACW	2 cut(s)	114, 571
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseI	GCWGC	3 cut(s)	68, 145, 437
TspGWI	ACGGA	2 cut(s)	35, 481
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.