pycom15g09710

Sarcosine oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
6320222 .. 6321427
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGGAATATTCCGGCGACGAGTACGACGTCATCGTAGTCGGAGCTGGCATCATGGGGAGCTCCACAGCCTACCAGACCGCCAAACGCGGCCAAAAAACCCTCCTCCTCGAGCAATTCGACTTCCTCCACCACCGCGGCTCCTCCCACGGCGAGTCCCGCACGATTCGCGCCACTTACCCGGAGGACTACTACACTCCGCTGGTCCTCGAGTCTTACAAGCTCTGGCAGCAAGCGGAATCCGAGATCGGCTACAATGTCTACTTCAAAGCCCACCAACTGGATATGGCTCCGGCGAACGACAAGGTTCTCCACGCCGTCGTCGAGAGCTGTCGGAAAAATTCTGTCGCGTTTAGGGTCATGAACAGGGACCAGCTGGATCAGGAGTTTTCGGGTCGGGTTATGATTCCGGAGGATTGGGTGGGTGTGGTGACAGAGCACGGCGGGGTTATTAAACCCACCAAGGCGGTGTCCATGTTTCAAACGCTCGCTTTGCAGAACGGCGCCGTTTTGAGGGATAACATGGAGGTGAAGGGTGTGGAGAGAGATAGGGTGAGAGGAGGGGTTTGGGTGTGCACAGCAAATGGGGAGAGGTTTTGGGGGAAGAAGTGTGTGGTGACGGTTGGCGCGTGGACGACAAAGTTAGTTAAAACGGTTGGTGGGGTCGAACTGCCGATACAGCCGCTGGAGACCACCGTGTGTTACTGGCGGATTAAGGAGGGGCACGAGGGTGGTTTTGCCATTGGAGGTGACTTCCCAACGTTTGCTAGCTACGGGAACCCTTACATTTATGGGACACCTTCTTTGGAGTATCCCGGTTTGATCAAGGTCGCCGTGCATGGCGGGTACCCGTGTGACCCGGATAAGAGGCCTTGGGGTCCCGGGAACCCGCTGGCTCCGTTGAAGGAGTGGATAGAGGGGAGGTTCTCTGGCGTAGTTGACTCCGGCGGGCCGGTGGCTACGCAGTTGTGCATGTACTCAATGACCCCGGATGAGGATTTTGTGATTGATTTCTTGGGTGGGGAATTTGGGAAGGATGTGGTGGTGGGCGGGGGGTTTTCGGGTCACGGGTTCAAGATGTCGCCGGTGGTGGGGAGGATTTTGGCTGACCTTGCGCTTACTGGGGAGGCCCAAGGAGTGGAGCTAAAGCACTTTAGGATAGCAAGGTTTCAAGAGAATCCCAAAGGCAATGCCAAACACTTTCTGTAA
Functional Annotation

Protein Analysis

402

Amino Acids

44.18

Weight (kDa)

6.03

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 9 - 370 1.3e-47 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013564)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc65I GGTACC 1 cut(s) 843
AccB1I GGYRCC 2 cut(s) 500, 843
AccB7I CCANNNNNTGG 2 cut(s) 277, 1135
AccI GTMKAC 1 cut(s) 258
AccII CGCG 5 cut(s) 87, 135, 168, 347, 626
AccIII TCCGGA 1 cut(s) 406
AclI AACGTT 1 cut(s) 758
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 337, 1022
AcyI GRCGYC 2 cut(s) 27, 501
AdeI CACNNNGTG 1 cut(s) 696
AfaI GTAC 3 cut(s) 23, 845, 974
AfiI CCNNNNNNNGG 5 cut(s) 277, 510, 991, 1088, 1135
AgsI TTSAA 5 cut(s) 265, 479, 901, 1072, 1169
AleI CACNNNNGTG 1 cut(s) 726
AluBI AGCT 7 cut(s) 44, 60, 220, 327, 373, 768, 1141
AluI AGCT 7 cut(s) 44, 60, 220, 327, 373, 768, 1141
Alw21I GWGCWC 3 cut(s) 62, 438, 575
Alw26I GTCTC 1 cut(s) 680
Alw44I GTGCAC 1 cut(s) 571
AlwI GGATC 1 cut(s) 384
AlwNI CAGNNNCTG 1 cut(s) 682
Ama87I CYCGRG 3 cut(s) 107, 206, 878
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 4 cut(s) 88, 866, 947, 1125
ApaLI GTGCAC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 337, 1022
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
Asp718I GGTACC 1 cut(s) 843
AspLEI GCGC 4 cut(s) 170, 503, 626, 1114
AspS9I GGNCC 5 cut(s) 202, 367, 875, 947, 1126
AsuC2I CCSGG 6 cut(s) 179, 813, 857, 879, 880, 986
AsuHPI GGTGA 5 cut(s) 439, 538, 562, 625, 758
AsuNHI GCTAGC 1 cut(s) 764
AvaI CYCGRG 3 cut(s) 107, 206, 878
AvaII GGWCC 3 cut(s) 202, 367, 875
BaeGI GKGCMC 2 cut(s) 575, 723
BaeI ACNNNNGTAYC 2 cut(s) 835, 868
BanI GGYRCC 2 cut(s) 500, 843
BanII GRGCYC 1 cut(s) 62
BauI CACGAG 1 cut(s) 722
Bbv12I GWGCWC 3 cut(s) 62, 438, 575
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 6 cut(s) 163, 299, 454, 488, 514, 815
BciVI GTATCC 1 cut(s) 819
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 6 cut(s) 179, 813, 857, 879, 880, 986
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 504
BfuI GTATCC 1 cut(s) 819
BisI GCNGC 4 cut(s) 88, 136, 227, 680
BlsI GCNGC 4 cut(s) 89, 137, 228, 681
Bme1390I CCNGG 6 cut(s) 179, 813, 857, 879, 880, 986
Bme18I GGWCC 3 cut(s) 202, 367, 875
BmeT110I CYCGRG 3 cut(s) 107, 206, 878
BmgT120I GGNCC 5 cut(s) 202, 367, 875, 947, 1126
BmrFI CCNGG 6 cut(s) 179, 813, 857, 879, 880, 986
BmrI ACTGGG 1 cut(s) 1128
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 1128
BpmI CTGGAG 1 cut(s) 704
BpuMI CCSGG 6 cut(s) 179, 813, 857, 879, 880, 986
BsaHI GRCGYC 2 cut(s) 27, 501
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 7 cut(s) 133, 145, 459, 869, 878, 984, 1129
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 510, 991, 1088, 1135
Bse118I RCCGGY 2 cut(s) 949, 1081
Bse1I ACTGG 3 cut(s) 282, 707, 1123
Bse3DI GCAATG 1 cut(s) 1192
BseAI TCCGGA 1 cut(s) 406
BseDI CCNNGG 7 cut(s) 133, 145, 459, 869, 878, 984, 1129
BseGI GGATG 2 cut(s) 994, 1039
BseLI CCNNNNNNNGG 5 cut(s) 277, 510, 991, 1088, 1135
BseMI GCAATG 1 cut(s) 1192
BseNI ACTGG 3 cut(s) 282, 707, 1123
BseRI GAGGAG 4 cut(s) 92, 95, 130, 570
BseSI GKGCMC 2 cut(s) 575, 723
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 5 cut(s) 87, 135, 168, 347, 626
BshFI GGCC 4 cut(s) 90, 868, 949, 1127
BshNI GGYRCC 2 cut(s) 500, 843
BsiHKAI GWGCWC 3 cut(s) 62, 438, 575
BsiHKCI CYCGRG 3 cut(s) 107, 206, 878
BslFI GGGAC 4 cut(s) 139, 380, 805, 861
BslI CCNNNNNNNGG 5 cut(s) 277, 510, 991, 1088, 1135
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 4 cut(s) 139, 380, 805, 861
BsnI GGCC 4 cut(s) 90, 868, 949, 1127
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 3 cut(s) 107, 206, 878
Bsp1286I GDGCHC 4 cut(s) 62, 438, 575, 723
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 243, 376, 819
BspANI GGCC 4 cut(s) 90, 868, 949, 1127
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 5 cut(s) 87, 135, 168, 347, 626
BspHI TCATGA 1 cut(s) 357
BspOI GCTAGC 1 cut(s) 768
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 2 cut(s) 500, 843
BspTNI GGTCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 1192
BsrFI RCCGGY 2 cut(s) 949, 1081
BsrI ACTGG 3 cut(s) 282, 707, 1123
BssAI RCCGGY 2 cut(s) 949, 1081
BssECI CCNNGG 7 cut(s) 133, 145, 459, 869, 878, 984, 1129
BssMI GATC 3 cut(s) 243, 376, 819
BssNI GRCGYC 2 cut(s) 27, 501
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 3 cut(s) 459, 869, 1129
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 619, 652, 694
BstACI GRCGYC 2 cut(s) 27, 501
BstC8I GCNNGC 6 cut(s) 46, 231, 486, 766, 891, 947
BstDSI CCRYGG 2 cut(s) 133, 145
BstF5I GGATG 2 cut(s) 994, 1039
BstFNI CGCG 5 cut(s) 87, 135, 168, 347, 626
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 4 cut(s) 170, 503, 626, 1114
BstKTI GATC 3 cut(s) 246, 379, 822
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 3 cut(s) 243, 376, 819
BstMWI GCNNNNNNNGC 6 cut(s) 156, 165, 226, 490, 676, 1109
BstNSI RCATGY 1 cut(s) 973
BstSCI CCNGG 6 cut(s) 177, 811, 855, 877, 878, 984
BstSLI GKGCMC 2 cut(s) 575, 723
BstUI CGCG 5 cut(s) 87, 135, 168, 347, 626
BstV1I GCAGC 1 cut(s) 238
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 4 cut(s) 90, 868, 949, 1127
BtgI CCRYGG 2 cut(s) 133, 145
BtsCI GGATG 2 cut(s) 994, 1039
Cac8I GCNNGC 6 cut(s) 46, 231, 486, 766, 891, 947
CaiI CAGNNNCTG 1 cut(s) 682
CciI TCATGA 1 cut(s) 357
CfoI GCGC 4 cut(s) 170, 503, 626, 1114
Cfr10I RCCGGY 2 cut(s) 949, 1081
Cfr13I GGNCC 5 cut(s) 202, 367, 875, 947, 1126
Cfr42I CCGCGG 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 878
Csp6I GTAC 3 cut(s) 22, 844, 973
CviAII CATG 6 cut(s) 52, 358, 472, 520, 836, 970
CviQI GTAC 3 cut(s) 22, 844, 973
DinI GGCGCC 1 cut(s) 502
DpnI GATC 3 cut(s) 245, 378, 821
DpnII GATC 3 cut(s) 243, 376, 819
DraIII CACNNNGTG 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 88
EciI GGCGGA 1 cut(s) 721
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 3 cut(s) 459, 869, 1129
Eco147I AGGCCT 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 680
Eco47I GGWCC 3 cut(s) 202, 367, 875
Eco53kI GAGCTC 1 cut(s) 60
Eco88I CYCGRG 3 cut(s) 107, 206, 878
EcoICRI GAGCTC 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 875
EcoT14I CCWWGG 3 cut(s) 459, 869, 1129
EcoT38I GRGCYC 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 459, 869, 1129
FaeI CATG 6 cut(s) 55, 361, 475, 523, 839, 973
FaiI YATR 9 cut(s) 53, 284, 359, 401, 473, 521, 789, 837, 971
FaqI GGGAC 4 cut(s) 139, 380, 805, 861
FatI CATG 6 cut(s) 51, 357, 471, 519, 835, 969
FauI CCCGC 6 cut(s) 164, 434, 833, 894, 938, 1040
FbaI TGATCA 1 cut(s) 819
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 88, 136, 227, 680
FokI GGATG 2 cut(s) 1001, 1046
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 4 cut(s) 88, 136, 227, 680
FspBI CTAG 1 cut(s) 765
GlaI GCGC 4 cut(s) 169, 502, 625, 1113
GluI GCNGC 4 cut(s) 88, 136, 227, 680
GsuI CTGGAG 1 cut(s) 704
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 4 cut(s) 90, 868, 949, 1127
HhaI GCGC 4 cut(s) 170, 503, 626, 1114
Hin1I GRCGYC 2 cut(s) 27, 501
Hin1II CATG 6 cut(s) 55, 361, 475, 523, 839, 973
Hin6I GCGC 4 cut(s) 168, 501, 624, 1112
HinP1I GCGC 4 cut(s) 168, 501, 624, 1112
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 7 cut(s) 152, 163, 209, 236, 403, 938, 1174
HphI GGTGA 5 cut(s) 439, 538, 562, 625, 758
Hpy166II GTNNAC 4 cut(s) 259, 573, 630, 937
Hpy188I TCNGA 3 cut(s) 41, 241, 333
Hpy188III TCNNGA 6 cut(s) 322, 358, 380, 407, 1072, 1169
Hpy8I GTNNAC 4 cut(s) 259, 573, 630, 937
Hpy99I CGWCG 4 cut(s) 20, 29, 320, 323
HpyAV CCTTC 4 cut(s) 523, 807, 895, 1024
HpyCH4III ACNGT 3 cut(s) 619, 652, 694
HpyCH4IV ACGT 2 cut(s) 27, 758
HpyCH4V TGCA 4 cut(s) 493, 573, 835, 969
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 165, 226, 490, 676, 1109
HpySE526I ACGT 2 cut(s) 27, 758
Hsp92I GRCGYC 2 cut(s) 27, 501
Hsp92II CATG 6 cut(s) 55, 361, 475, 523, 839, 973
HspAI GCGC 4 cut(s) 168, 501, 624, 1112
KasI GGCGCC 1 cut(s) 500
KflI GGGWCCC 1 cut(s) 875
Kpn2I TCCGGA 1 cut(s) 406
KpnI GGTACC 1 cut(s) 847
Ksp22I TGATCA 1 cut(s) 819
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 3 cut(s) 243, 376, 819
LmnI GCTCC 7 cut(s) 41, 57, 65, 143, 292, 898, 1138
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 765
MaeII ACGT 2 cut(s) 27, 758
MaeIII GTNAC 6 cut(s) 427, 613, 698, 746, 851, 1061
MalI GATC 3 cut(s) 245, 378, 821
MboI GATC 3 cut(s) 243, 376, 819
MboII GAAGA 1 cut(s) 613
MhlI GDGCHC 4 cut(s) 62, 438, 575, 723
MluCI AATT 3 cut(s) 113, 337, 1022
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 3 cut(s) 161, 218, 932
MmeI TCCRAC 2 cut(s) 19, 311
MroI TCCGGA 1 cut(s) 406
MseI TTAA 3 cut(s) 450, 645, 711
MslI CAYNNNNRTG 2 cut(s) 524, 726
MspA1I CMGCKG 5 cut(s) 135, 199, 373, 682, 889
MspR9I CCNGG 6 cut(s) 179, 813, 857, 879, 880, 986
MvnI CGCG 5 cut(s) 87, 135, 168, 347, 626
MwoI GCNNNNNNNGC 6 cut(s) 156, 165, 226, 490, 676, 1109
NarI GGCGCC 1 cut(s) 501
NciI CCSGG 6 cut(s) 179, 813, 857, 879, 880, 986
NdeII GATC 3 cut(s) 243, 376, 819
NheI GCTAGC 1 cut(s) 764
NlaIII CATG 6 cut(s) 55, 361, 475, 523, 839, 973
NmuCI GTSAC 5 cut(s) 427, 613, 746, 851, 1061
NspI RCATGY 1 cut(s) 973
OliI CACNNNNGTG 1 cut(s) 726
PaeR7I CTCGAG 2 cut(s) 107, 206
PagI TCATGA 1 cut(s) 357
PceI AGGCCT 1 cut(s) 868
PcsI WCGNNNNNNNCGW 5 cut(s) 24, 30, 114, 318, 623
PfeI GAWTC 4 cut(s) 163, 236, 403, 1174
PflMI CCANNNNNTGG 2 cut(s) 277, 1135
PkrI GCNGC 4 cut(s) 89, 137, 228, 681
PleI GAGTC 3 cut(s) 160, 217, 932
PluTI GGCGCC 1 cut(s) 504
PpsI GAGTC 3 cut(s) 160, 217, 932
PpuMI RGGWCCY 1 cut(s) 875
Psp124BI GAGCTC 1 cut(s) 62
Psp1406I AACGTT 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 875
PspPI GGNCC 5 cut(s) 202, 367, 875, 947, 1126
PspPPI RGGWCCY 1 cut(s) 875
PspXI VCTCGAGB 2 cut(s) 107, 206
PsrI GAACNNNNNNTAC 2 cut(s) 657, 689
PstNI CAGNNNCTG 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 3 cut(s) 23, 845, 974
RsaNI GTAC 3 cut(s) 22, 844, 973
RseI CAYNNNNRTG 2 cut(s) 524, 726
SacI GAGCTC 1 cut(s) 62
SacII CCGCGG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 450, 645, 711
SatI GCNGC 4 cut(s) 88, 136, 227, 680
Sau3AI GATC 3 cut(s) 243, 376, 819
Sau96I GGNCC 5 cut(s) 202, 367, 875, 947, 1126
SchI GAGTC 3 cut(s) 161, 218, 932
ScrFI CCNGG 6 cut(s) 179, 813, 857, 879, 880, 986
SduI GDGCHC 4 cut(s) 62, 438, 575, 723
SfaNI GCATC 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 502
Sfr274I CTCGAG 2 cut(s) 107, 206
Sfr303I CCGCGG 1 cut(s) 136
SgrAI CRCCGGYG 1 cut(s) 1081
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 3 cut(s) 202, 367, 875
SlaI CTCGAG 2 cut(s) 107, 206
SmaI CCCGGG 1 cut(s) 880
SmiMI CAYNNNNRTG 2 cut(s) 524, 726
SmlI CTYRAG 2 cut(s) 107, 206
SmoI CTYRAG 2 cut(s) 107, 206
Sse9I AATT 3 cut(s) 113, 337, 1022
SseBI AGGCCT 1 cut(s) 868
SspDI GGCGCC 1 cut(s) 500
SspI AATATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 765
SstI GAGCTC 1 cut(s) 62
StuI AGGCCT 1 cut(s) 868
StyD4I CCNGG 6 cut(s) 177, 811, 855, 877, 878, 984
StyI CCWWGG 3 cut(s) 459, 869, 1129
TaaI ACNGT 3 cut(s) 619, 652, 694
TaiI ACGT 2 cut(s) 30, 761
TaqI TCGA 5 cut(s) 108, 117, 207, 321, 663
TasI AATT 3 cut(s) 113, 337, 1022
TatI WGTACW 1 cut(s) 972
TauI GCSGC 3 cut(s) 90, 138, 682
TfiI GAWTC 4 cut(s) 163, 236, 403, 1174
Tru1I TTAA 3 cut(s) 450, 645, 711
Tru9I TTAA 3 cut(s) 450, 645, 711
TseFI GTSAC 5 cut(s) 427, 613, 746, 851, 1061
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 5 cut(s) 427, 613, 746, 851, 1061
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 885
TspMI CCCGGG 1 cut(s) 878
Van91I CCANNNNNTGG 2 cut(s) 277, 1135
VneI GTGCAC 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 202, 367, 875
XapI RAATTY 2 cut(s) 337, 1022
XceI RCATGY 1 cut(s) 973
XhoI CTCGAG 2 cut(s) 107, 206
XmaI CCCGGG 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 765
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.