pycom15g10720

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010530
Physical Location & Seq
Reverse (-)
7164324 .. 7166351
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGTGGAATTCAAATGAATTGCCTTTGCTTGTCCGCAACAATTTTGTTAATTTGTTCTGCACTCGATCATTCTTCAGTGCCCTATTCTTCTCGCTGATCGCATACTTACCAGGAATGTCTAAGCCTCAGAGTTCTCTTCCATACCTGCTTCTGTTCTTCTTCTTCTCAGCAGCGCTCATGCATTCCTCTCAGGCTGATGTTGGCACTGCTGCTCAGTACAGGCCCCCTTATTTACCTACCGCCTGCGGTGGAAGCGACCAGGGACAGTTTCCTCCAGGCAATCTGTTCGCGTCCGTTGGCGAGGGAATTTGGGACAACGGTGCAGCTTGTGGAAGACAATATCAGGTGAGGTGCATAAGTGCTCCCGTGCGAGGAACCTGCGTTCCAGGGAACACGATTCAGGTAAAGGTTGTGGATCGTGCTCTCTCTTCGGTGTCCCGACCTTCAAGAAGTGATGCTACCATAGTTCTCTCTACTACTGCATTTGCTGCAATCGCCAACTCTTCCGCTACATTCGTTAACATCGAATTTCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

180

Amino Acids

19.34

Weight (kDa)

8.7

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 102 - 176 2.3e-10 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 153, 386
AccII CGCG 1 cut(s) 290
AciI CCGC 4 cut(s) 34, 240, 246, 507
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 3 cut(s) 7, 306, 527
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 218
AfeI AGCGCT 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 12, 447, 533
AjnI CCWGG 4 cut(s) 109, 258, 274, 385
AloI GAACNNNNNNTCC 4 cut(s) 366, 367, 398, 399
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw21I GWGCWC 2 cut(s) 364, 424
AlwI GGATC 1 cut(s) 423
Aor51HI AGCGCT 1 cut(s) 174
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 4 cut(s) 170, 209, 323, 488
ApoI RAATTY 3 cut(s) 7, 306, 527
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 82
BarI GAAGNNNNNNTAC 2 cut(s) 442, 474
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 2 cut(s) 364, 424
BbvI GCAGC 4 cut(s) 182, 196, 335, 475
BcgI CGANNNNNNTGC 4 cut(s) 268, 302, 360, 394
BciT130I CCWGG 4 cut(s) 111, 260, 276, 387
BfoI RGCGCY 1 cut(s) 176
BfuAI ACCTGC 2 cut(s) 153, 386
BisI GCNGC 4 cut(s) 171, 210, 324, 489
BlsI GCNGC 4 cut(s) 172, 211, 325, 490
Bme1390I CCNGG 4 cut(s) 111, 260, 276, 387
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 224, 376
BmrFI CCNGG 4 cut(s) 111, 260, 276, 387
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 259, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseBI CCWGG 4 cut(s) 111, 260, 276, 387
BseDI CCNNGG 2 cut(s) 259, 386
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 4 cut(s) 140, 180, 203, 227
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 4 cut(s) 182, 196, 335, 475
BsgI GTGCAG 2 cut(s) 43, 342
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 364, 424
BslFI GGGAC 3 cut(s) 276, 326, 421
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 276, 326, 421
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 223
Bsp1286I GDGCHC 3 cut(s) 82, 364, 424
Bsp143I GATC 3 cut(s) 65, 96, 415
BspACI CCGC 4 cut(s) 34, 240, 246, 507
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 4 cut(s) 139, 179, 202, 226
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 224, 376
BspMI ACCTGC 2 cut(s) 153, 386
BspPI GGATC 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 259, 386
BssMI GATC 3 cut(s) 65, 96, 415
Bst2UI CCWGG 4 cut(s) 111, 260, 276, 387
Bst4CI ACNGT 3 cut(s) 267, 320, 537
Bst6I CTCTTC 3 cut(s) 141, 433, 508
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 5 cut(s) 120, 126, 166, 189, 213
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 68, 99, 418
BstMBI GATC 3 cut(s) 65, 96, 415
BstMWI GCNNNNNNNGC 3 cut(s) 252, 488, 494
BstNI CCWGG 4 cut(s) 111, 260, 276, 387
BstSCI CCNGG 4 cut(s) 109, 258, 274, 385
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 182, 196, 335, 475
BstV2I GAAGAC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 82, 204
BveI ACCTGC 2 cut(s) 153, 386
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 178
CviJI RGCY 4 cut(s) 124, 194, 223, 326
CviKI_1 RGCY 4 cut(s) 124, 194, 223, 326
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 5 cut(s) 120, 126, 166, 189, 213
DpnI GATC 3 cut(s) 67, 98, 417
DpnII GATC 3 cut(s) 65, 96, 415
Eam1104I CTCTTC 3 cut(s) 141, 433, 508
EarI CTCTTC 3 cut(s) 141, 433, 508
Eco47III AGCGCT 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 4 cut(s) 109, 258, 274, 385
EcoT22I ATGCAT 1 cut(s) 183
FaeI CATG 1 cut(s) 181
FaiI YATR 5 cut(s) 103, 142, 179, 356, 464
FaqI GGGAC 3 cut(s) 276, 326, 421
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 171, 210, 324, 489
Fsp4HI GCNGC 4 cut(s) 171, 210, 324, 489
GlaI GCGC 1 cut(s) 174
GluI GCNGC 4 cut(s) 171, 210, 324, 489
GsuI CTGGAG 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 1 cut(s) 397
HpaI GTTAAC 1 cut(s) 520
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 438, 447
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 453
HpyCH4III ACNGT 3 cut(s) 267, 320, 537
HpyCH4V TGCA 6 cut(s) 60, 181, 323, 354, 482, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 488, 494
HpyF3I CTNAG 5 cut(s) 120, 126, 166, 189, 213
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 3 cut(s) 65, 96, 415
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 4 cut(s) 182, 196, 335, 475
LweI GCATC 1 cut(s) 445
MalI GATC 3 cut(s) 67, 98, 417
MboI GATC 3 cut(s) 65, 96, 415
MboII GAAGA 9 cut(s) 64, 79, 128, 148, 151, 154, 345, 420, 495
MhlI GDGCHC 3 cut(s) 82, 364, 424
MluCI AATT 6 cut(s) 7, 17, 40, 49, 306, 527
MnlI CCTC 6 cut(s) 135, 196, 282, 295, 342, 365
Mph1103I ATGCAT 1 cut(s) 183
MseI TTAA 2 cut(s) 48, 519
MspR9I CCNGG 4 cut(s) 111, 260, 276, 387
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 4 cut(s) 111, 260, 276, 387
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 252, 488, 494
NdeII GATC 3 cut(s) 65, 96, 415
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 224, 376
NsiI ATGCAT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 4 cut(s) 172, 211, 325, 490
Psp6I CCWGG 4 cut(s) 109, 258, 274, 385
PspGI CCWGG 4 cut(s) 109, 258, 274, 385
PspN4I GGNNCC 2 cut(s) 224, 376
PspPI GGNCC 1 cut(s) 222
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 48, 519
SatI GCNGC 4 cut(s) 171, 210, 324, 489
Sau3AI GATC 3 cut(s) 65, 96, 415
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 4 cut(s) 111, 260, 276, 387
SduI GDGCHC 3 cut(s) 82, 364, 424
SetI ASST 9 cut(s) 147, 238, 328, 348, 353, 380, 405, 411, 445
SfaNI GCATC 1 cut(s) 445
Sse9I AATT 6 cut(s) 7, 17, 40, 49, 306, 527
SsiI CCGC 4 cut(s) 34, 240, 246, 507
StyD4I CCNGG 4 cut(s) 109, 258, 274, 385
TaaI ACNGT 3 cut(s) 267, 320, 537
TaqI TCGA 2 cut(s) 64, 525
TasI AATT 6 cut(s) 7, 17, 40, 49, 306, 527
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 2 cut(s) 48, 519
Tru9I TTAA 2 cut(s) 48, 519
TscAI CASTG 2 cut(s) 82, 211
TseI GCWGC 4 cut(s) 170, 209, 323, 488
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 82, 211
XapI RAATTY 3 cut(s) 7, 306, 527
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.