pycom15g11330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010191
Physical Location & Seq
Reverse (-)
7649450 .. 7651155
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGCCAAGATCAGGGCCAAGACCATATGAATGTGTGAGAAGAGCTTGGCACCGTGAGAGGCACCAACCCATGAGAGGTTCTCTCATCAAAGAAATCTTCAGGGTTGTGAACGGGATCCATAGCTCAGCTACTAAGAAGAACAAAGAATGGCAAGAGAAGCTCCCAATTGTTGTTCTCAAAGCTGAAGAAATTATGTACTCCAAAGCCAATTCTGAGGCAGAATACATGGACCTTAAAACCCTTTGGGACAGAACAAATGATGCCATTAACACGATAATTCGGCGTGATGAGACTACTGAAACTGGAGAGTTTCTTCAGCCTTGTATTGAAGCTGCTCTCATTTTGGGGTGCATACCGAGAAGAGCTACGAGGAGTCAACGGAATACTAACCCAAGGTGTTATCTGATGCCCGTGACTTCGCATGTCCCTAGCATTTCTCCTAGTGTGGTAGAGGATGCTAATAAAAAAGATTACACGTCCAATTCGCAGTATAGGCCACATTGTTCAAATTTTGTTAACCCCAAAACCACTAATTCAACCCCTCTTGTTTTTGAACCTAGATGCCCTGTTGCCCAATATAACGACTGCAATACTATGAAGTTCATGGTTGCATCCGAAAATGTTCCTCCTTTGGGTTATGACCAATGTTTCTCTAGGGAAAATCTGGCAACATTTAATTTTCCTAAATACCCTCTGTACTATGGAAATCTTCCTCAGTTCAGAGAACCGAAACCAGGTTTTGCTGTCCTTCCCAAACCAGTTTCCGACCCCTTAGAACCTGCCAAGATAGGAGTTATCCCAAACCTGCTCTGTAATGGAGATAAATCAAATAATAACACACAAACAGAAAGAATGGACTACCATGAGAACCCATGTTTGATTGGCTGTGATTTGTCTCTGCGGTTAGGCCCGCACTCTAGTCAACTCCCAAGCGGTGAGAGCAGTCAGCCCCAGGGGGGCAAAGATGTTGGCGTTGAGGAACGGTTGAAGTGTCGTGATCAGTCACCGCAATTTGATAAACAGTTTTCTCTCACTCCTAAGGGTAGTGAGTATGGACCAACAGACTCATGGGGTAGGTTGAGTTTTGAGGGCGAAGATTTATATGTCCAAGCAGCAATGAGAAAGCGGAAGGCAGCTTTTAATCACCCAACAGAGGATTCAAAATTTTGTAGGCAGCCGGAGCTTCCTTTCAGCCACTTTAATGGAAGCATGAGGAATGGAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

46.43

Weight (kDa)

8.59

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32295 AT4G32295 AT4G32295 AT4G32295
fragaria_vesca FvH4_2g29010 FvH4_2g29010
malus_domestica MD00G1144400.v1.1
prunus_persica Prupe.1G481300_v2.0.a1
pyrus_communis pycom15g11330
rosa_chinensis RchiOBHm_Chr6g0297891
rosa_laevigata RLG00000011553
rosa_multiflora Rmu_sc0011097.1_g000012
rosa_roxburghii Rroxscaffold_7G00170110 Rroxscaffold_7G00178980
rosa_rugosa Rorug06G0276600 Rorug06G0276700
rosa_samantha Rh6AG387200 Rh6BG395600 Rh6CG401400 Rh6DG387900
rosa_wichuraiana Rw6G033730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 787, 813
AccB1I GGYRCC 2 cut(s) 48, 60
AciI CCGC 5 cut(s) 901, 911, 933, 1007, 1126
AclWI GGATC 2 cut(s) 109, 122
AcsI RAATTY 2 cut(s) 508, 1163
AcuI CTGAAG 3 cut(s) 82, 204, 299
AfaI GTAC 2 cut(s) 197, 698
AfiI CCNNNNNNNGG 6 cut(s) 11, 74, 632, 734, 956, 1153
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 6 cut(s) 329, 507, 537, 554, 988, 1161
AjiI CACGTC 1 cut(s) 477
AjnI CCWGG 2 cut(s) 733, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 1141, 1173
AluBI AGCT 9 cut(s) 44, 123, 128, 160, 182, 332, 365, 1136, 1183
AluI AGCT 9 cut(s) 44, 123, 128, 160, 182, 332, 365, 1136, 1183
Alw26I GTCTC 2 cut(s) 284, 900
AlwI GGATC 2 cut(s) 109, 122
AoxI GGCC 3 cut(s) 14, 494, 907
ApeKI GCWGC 4 cut(s) 332, 1112, 1133, 1174
ApoI RAATTY 2 cut(s) 508, 1163
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 14, 229, 908, 1055
AsuHPI GGTGA 3 cut(s) 947, 996, 1136
AvaII GGWCC 2 cut(s) 229, 1055
AxyI CCTNAGG 1 cut(s) 1038
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 2 cut(s) 48, 60
BbvI GCAGC 4 cut(s) 319, 1124, 1145, 1186
BciT130I CCWGG 2 cut(s) 735, 953
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 2 cut(s) 284, 900
BfaI CTAG 5 cut(s) 429, 441, 558, 654, 918
BfuAI ACCTGC 2 cut(s) 787, 813
BisI GCNGC 4 cut(s) 333, 1113, 1134, 1175
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 4 cut(s) 334, 1114, 1135, 1176
Bme1390I CCNGG 2 cut(s) 735, 953
Bme18I GGWCC 2 cut(s) 229, 1055
BmgBI CACGTC 1 cut(s) 477
BmgT120I GGNCC 4 cut(s) 14, 229, 908, 1055
BmiI GGNNCC 3 cut(s) 50, 62, 116
BmrFI CCNGG 2 cut(s) 735, 953
BmsI GCATC 5 cut(s) 250, 396, 445, 551, 620
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 66, 98
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 124
BsaJI CCNNGG 3 cut(s) 392, 951, 952
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 74, 632, 734, 956, 1153
Bse1I ACTGG 2 cut(s) 307, 758
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 1122
BseBI CCWGG 2 cut(s) 735, 953
BseDI CCNNGG 3 cut(s) 392, 951, 952
BseGI GGATG 2 cut(s) 460, 611
BseLI CCNNNNNNNGG 6 cut(s) 11, 74, 632, 734, 956, 1153
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 3 cut(s) 138, 204, 728
BseNI ACTGG 2 cut(s) 307, 758
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 4 cut(s) 319, 1124, 1145, 1186
BshFI GGCC 3 cut(s) 16, 496, 909
BshNI GGYRCC 2 cut(s) 48, 60
BsiSI CCGG 1 cut(s) 1178
BslFI GGGAC 2 cut(s) 260, 410
BslI CCNNNNNNNGG 6 cut(s) 11, 74, 632, 734, 956, 1153
BsmAI GTCTC 2 cut(s) 284, 900
BsmFI GGGAC 2 cut(s) 260, 410
BsnI GGCC 3 cut(s) 16, 496, 909
Bsp143I GATC 3 cut(s) 8, 114, 997
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 5 cut(s) 901, 911, 933, 1007, 1126
BspANI GGCC 3 cut(s) 16, 496, 909
BspCNI CTCAG 3 cut(s) 137, 205, 727
BspLI GGNNCC 3 cut(s) 50, 62, 116
BspMI ACCTGC 2 cut(s) 787, 813
BspPI GGATC 2 cut(s) 109, 122
BspQI GCTCTTC 2 cut(s) 34, 355
BspT107I GGYRCC 2 cut(s) 48, 60
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 2 cut(s) 307, 758
BssECI CCNNGG 3 cut(s) 392, 951, 952
BssMI GATC 3 cut(s) 8, 114, 997
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 735, 953
Bst4CI ACNGT 3 cut(s) 53, 984, 1023
Bst6I CTCTTC 2 cut(s) 34, 355
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 6 cut(s) 124, 132, 213, 714, 772, 1038
BstF5I GGATG 2 cut(s) 460, 611
BstKTI GATC 3 cut(s) 11, 117, 1000
BstMAI GTCTC 2 cut(s) 284, 900
BstMBI GATC 3 cut(s) 8, 114, 997
BstMWI GCNNNNNNNGC 4 cut(s) 157, 493, 939, 1180
BstNI CCWGG 2 cut(s) 735, 953
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 733, 951
BstV1I GCAGC 4 cut(s) 319, 1124, 1145, 1186
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 1202
BstYI RGATCY 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 1038
BsuRI GGCC 3 cut(s) 16, 496, 909
BtrI CACGTC 1 cut(s) 477
BtsCI GGATG 2 cut(s) 460, 611
BveI ACCTGC 2 cut(s) 787, 813
Cac8I GCNNGC 1 cut(s) 911
Cfr13I GGNCC 4 cut(s) 14, 229, 908, 1055
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 2 cut(s) 196, 697
CviAII CATG 8 cut(s) 70, 226, 422, 604, 863, 873, 1068, 1210
CviQI GTAC 2 cut(s) 196, 697
DdeI CTNAG 6 cut(s) 124, 132, 213, 714, 772, 1038
DpnI GATC 3 cut(s) 10, 116, 999
DpnII GATC 3 cut(s) 8, 114, 997
Eam1104I CTCTTC 2 cut(s) 34, 355
EarI CTCTTC 2 cut(s) 34, 355
Eco130I CCWWGG 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 229, 1055
Eco57I CTGAAG 3 cut(s) 82, 204, 299
Eco81I CCTNAGG 1 cut(s) 1038
EcoRII CCWGG 2 cut(s) 733, 951
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 8 cut(s) 73, 229, 425, 607, 866, 876, 1071, 1213
FaqI GGGAC 2 cut(s) 260, 410
FatI CATG 8 cut(s) 69, 225, 421, 603, 862, 872, 1067, 1209
FauI CCCGC 1 cut(s) 918
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 997
Fnu4HI GCNGC 4 cut(s) 333, 1113, 1134, 1175
FokI GGATG 2 cut(s) 467, 598
Fsp4HI GCNGC 4 cut(s) 333, 1113, 1134, 1175
FspBI CTAG 5 cut(s) 429, 441, 558, 654, 918
GluI GCNGC 4 cut(s) 333, 1113, 1134, 1175
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 16, 496, 909
HapII CCGG 1 cut(s) 1178
Hin1II CATG 8 cut(s) 73, 229, 425, 607, 866, 876, 1071, 1213
HincII GTYRAC 3 cut(s) 377, 517, 923
HindII GTYRAC 3 cut(s) 377, 517, 923
HinfI GANTC 3 cut(s) 373, 1064, 1157
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 1 cut(s) 1178
HphI GGTGA 3 cut(s) 947, 996, 1136
Hpy166II GTNNAC 4 cut(s) 109, 377, 517, 923
Hpy188I TCNGA 5 cut(s) 214, 405, 616, 722, 766
Hpy188III TCNNGA 1 cut(s) 995
Hpy8I GTNNAC 4 cut(s) 109, 377, 517, 923
HpyAV CCTTC 2 cut(s) 758, 1123
HpyCH4III ACNGT 3 cut(s) 53, 984, 1023
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 351, 588, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 493, 939, 1180
HpyF3I CTNAG 6 cut(s) 124, 132, 213, 714, 772, 1038
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 8 cut(s) 73, 229, 425, 607, 866, 876, 1071, 1213
Ksp22I TGATCA 1 cut(s) 997
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 8, 114, 997
LguI GCTCTTC 2 cut(s) 34, 355
LmnI GCTCC 2 cut(s) 165, 1180
Lsp1109I GCAGC 4 cut(s) 319, 1124, 1145, 1186
LweI GCATC 5 cut(s) 250, 396, 445, 551, 620
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 5 cut(s) 429, 441, 558, 654, 918
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 412, 1002
MalI GATC 3 cut(s) 10, 116, 999
MboI GATC 3 cut(s) 8, 114, 997
MboII GAAGA 8 cut(s) 51, 88, 148, 197, 305, 372, 701, 1106
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 114
MlyI GAGTC 2 cut(s) 382, 1058
MmeI TCCRAC 1 cut(s) 789
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 6 cut(s) 234, 267, 516, 675, 1140, 1200
MslI CAYNNNNRTG 2 cut(s) 28, 1200
MspI CCGG 1 cut(s) 1178
MspR9I CCNGG 2 cut(s) 735, 953
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 2 cut(s) 735, 953
MwoI GCNNNNNNNGC 4 cut(s) 157, 493, 939, 1180
NdeI CATATG 1 cut(s) 25
NdeII GATC 3 cut(s) 8, 114, 997
NlaIII CATG 8 cut(s) 73, 229, 425, 607, 866, 876, 1071, 1213
NlaIV GGNNCC 3 cut(s) 50, 62, 116
NmuCI GTSAC 2 cut(s) 412, 1002
NspI RCATGY 1 cut(s) 425
PasI CCCWGGG 1 cut(s) 952
PciSI GCTCTTC 2 cut(s) 34, 355
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 1157
PkrI GCNGC 4 cut(s) 334, 1114, 1135, 1176
PleI GAGTC 2 cut(s) 381, 1058
PpsI GAGTC 2 cut(s) 381, 1058
Psp6I CCWGG 2 cut(s) 733, 951
PspGI CCWGG 2 cut(s) 733, 951
PspN4I GGNNCC 3 cut(s) 50, 62, 116
PspPI GGNCC 4 cut(s) 14, 229, 908, 1055
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 2 cut(s) 197, 698
RsaNI GTAC 2 cut(s) 196, 697
RseI CAYNNNNRTG 2 cut(s) 28, 1200
SapI GCTCTTC 2 cut(s) 34, 355
SaqAI TTAA 6 cut(s) 234, 267, 516, 675, 1140, 1200
SatI GCNGC 4 cut(s) 333, 1113, 1134, 1175
Sau3AI GATC 3 cut(s) 8, 114, 997
Sau96I GGNCC 4 cut(s) 14, 229, 908, 1055
SchI GAGTC 2 cut(s) 382, 1058
ScrFI CCNGG 2 cut(s) 735, 953
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 5 cut(s) 250, 396, 445, 551, 620
SinI GGWCC 2 cut(s) 229, 1055
SmiMI CAYNNNNRTG 2 cut(s) 28, 1200
SsiI CCGC 5 cut(s) 901, 911, 933, 1007, 1126
SspMI CTAG 5 cut(s) 429, 441, 558, 654, 918
StyD4I CCNGG 2 cut(s) 733, 951
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 53, 984, 1023
TaiI ACGT 1 cut(s) 479
TatI WGTACW 2 cut(s) 195, 696
TfiI GAWTC 1 cut(s) 1157
Tru1I TTAA 6 cut(s) 234, 267, 516, 675, 1140, 1200
Tru9I TTAA 6 cut(s) 234, 267, 516, 675, 1140, 1200
TseFI GTSAC 2 cut(s) 412, 1002
TseI GCWGC 4 cut(s) 332, 1112, 1133, 1174
Tsp45I GTSAC 2 cut(s) 412, 1002
TspDTI ATGAA 3 cut(s) 42, 592, 611
TspGWI ACGGA 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 229, 1055
XapI RAATTY 2 cut(s) 508, 1163
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 5 cut(s) 429, 441, 558, 654, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.