pycom15g11370

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015344
Physical Location & Seq
Forward (+)
7695732 .. 7699114
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGTCGGGTTCGGTCAAGAATACGATATTGCCGGTGTCGGATCCTCCGAGGGACCAGGAGAGAGAGAGACTCATCGGAGCTGGCGACGATGAGAAGCTCTTCAGAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATCTCGTACATGGCTTGTGCAGTGATGTTGGTGATGTTCAACAAGGCAGCTCTCTCGTCTTATAAATTTCCAAGTGCAAACGTTATCACACTTTTTCAGATGATATGTTCATGTGGTTTTCTCTACACCTTGAGACGCTGGAAGATGATTTCTTTCACAGTAGGTGAATCTTCGATTATTTCTGACAACAACACCACAACACTTGTACCATTAAAGACATTGAAGAAAACCCTTCCTCTTGCAGGAGCTTATTTGCTGTACATGGTACCTAGCCACCATGGAGTCTGTCCGTGGAGTAAATGTTCCCATGTACACCACCCTCAGAAGAACTACCGTGGTATTTACAATGGTTATGGAGTATGTTTTGGCTGGGCAGAGATATACATCTCCCATTGTTCGAAGTGTCGGCCTGATTGTTCTTGGTGCATTTGTTGCCGGATCGATAAGTTTTTATCATTTGATGCCTATGGCTATGGTGTTGTTTTCTTATCCAACATCACGACAGCAGTATATCTTGCAACCATAGCCCGTATTGGGAAATCCAGTGGCCTTAATAGTTTTGGCCTCATGTGGTGTAACGGATTCACATGCGGACCGATTTTGCTGTTTTTGACTTTTATTAGTGGTGACTTGAAGGCAACAATCGAGTTTCCTCATCTTCTTTCACCTGGTTTTATGGCGGTCTTGCTTTGTTCCTGTATACTAGCCTTCTTCTTGAATTACAGCATATTCCTTAACACAACTCTGAATTCAGCTCTTACGCAGACAATTTGCGGTAACTTGAAGGATTTTTTTACCGTTGGACTTGGCTGGATGCTATTCGGCGGCCTTCCATTTGATATTTTGAATGTTATCGGTCAATCTCTCGGTTTCATTGGCTCTGGGTTGTATGCCTACTATAAGCTCATAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

353

Amino Acids

38.88

Weight (kDa)

8.96

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
Acc65I GGTACC 1 cut(s) 406
AccB1I GGYRCC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 841
AciI CCGC 5 cut(s) 111, 732, 821, 915, 966
AclI AACGTT 1 cut(s) 222
AclWI GGATC 5 cut(s) 35, 48, 102, 115, 587
AcsI RAATTY 2 cut(s) 206, 889
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 5 cut(s) 149, 348, 401, 408, 453
AfiI CCNNNNNNNGG 2 cut(s) 383, 675
AgsI TTSAA 6 cut(s) 181, 364, 775, 859, 925, 988
AjiI CACGTC 1 cut(s) 125
AjnI CCWGG 2 cut(s) 54, 808
AloI GAACNNNNNNTCC 2 cut(s) 427, 459
AluBI AGCT 6 cut(s) 80, 97, 191, 389, 896, 1045
AluI AGCT 6 cut(s) 80, 97, 191, 389, 896, 1045
Alw26I GTCTC 2 cut(s) 61, 268
AlwI GGATC 5 cut(s) 35, 48, 102, 115, 587
AoxI GGCC 4 cut(s) 548, 688, 703, 967
ApeKI GCWGC 2 cut(s) 137, 188
ApoI RAATTY 2 cut(s) 206, 889
Asp700I GAANNNNTTC 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 52, 734
AsuHPI GGTGA 4 cut(s) 184, 317, 779, 798
AsuII TTCGAA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 52, 734
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BamHI GGATCC 2 cut(s) 40, 107
BanI GGYRCC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 124, 200
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 2 cut(s) 56, 810
BcoDI GTCTC 2 cut(s) 61, 268
BfaI CTAG 2 cut(s) 411, 845
BisI GCNGC 3 cut(s) 138, 189, 967
BlsI GCNGC 3 cut(s) 139, 190, 968
Bme1390I CCNGG 2 cut(s) 56, 810
Bme18I GGWCC 2 cut(s) 52, 734
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 52, 734
BmiI GGNNCC 5 cut(s) 42, 53, 109, 130, 408
BmrFI CCNGG 2 cut(s) 56, 810
BmsI GCATC 2 cut(s) 592, 945
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 292
Bsa29I ATCGAT 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 524
BsaJI CCNNGG 4 cut(s) 47, 418, 431, 475
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 675
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 2 cut(s) 56, 810
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 47, 418, 431, 475
BseGI GGATG 1 cut(s) 960
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 383, 675
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 684
BseXI GCAGC 2 cut(s) 124, 200
BseYI CCCAGC 1 cut(s) 510
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 4 cut(s) 550, 690, 705, 969
BshNI GGYRCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 582
BsiSI CCGG 2 cut(s) 32, 577
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 383, 675
BsmAI GTCTC 2 cut(s) 61, 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 4 cut(s) 550, 690, 705, 969
Bsp119I TTCGAA 1 cut(s) 539
Bsp1407I TGTACA 2 cut(s) 399, 451
Bsp143I GATC 3 cut(s) 40, 107, 579
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 5 cut(s) 111, 732, 821, 915, 966
BspANI GGCC 4 cut(s) 550, 690, 705, 969
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 582
BspLI GGNNCC 5 cut(s) 42, 53, 109, 130, 408
BspPI GGATC 5 cut(s) 35, 48, 102, 115, 587
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 399, 451
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 4 cut(s) 47, 418, 431, 475
BssMI GATC 3 cut(s) 40, 107, 579
BssNAI GTATAC 1 cut(s) 842
BssT1I CCWWGG 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 842
Bst2UI CCWGG 2 cut(s) 56, 810
Bst4CI ACNGT 3 cut(s) 301, 476, 940
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 573
BstAUI TGTACA 2 cut(s) 399, 451
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 3 cut(s) 418, 431, 475
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 960
BstKTI GATC 3 cut(s) 43, 110, 582
BstMAI GTCTC 2 cut(s) 61, 268
BstMBI GATC 3 cut(s) 40, 107, 579
BstMWI GCNNNNNNNGC 3 cut(s) 137, 573, 665
BstNI CCWGG 2 cut(s) 56, 810
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 54, 808
BstV1I GCAGC 2 cut(s) 124, 200
BstX2I RGATCY 2 cut(s) 40, 107
BstYI RGATCY 2 cut(s) 40, 107
BstZ17I GTATAC 1 cut(s) 842
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 4 cut(s) 550, 690, 705, 969
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 3 cut(s) 418, 431, 475
BtrI CACGTC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 960
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 691
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 52, 734
ClaI ATCGAT 1 cut(s) 582
CpoI CGGWCCG 1 cut(s) 734
CseI GACGC 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 808
Csp6I GTAC 5 cut(s) 148, 347, 400, 407, 452
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CspI CGGWCCG 1 cut(s) 734
CviAII CATG 8 cut(s) 115, 151, 252, 403, 419, 449, 709, 729
CviQI GTAC 5 cut(s) 148, 347, 400, 407, 452
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 42, 109, 581
DpnII GATC 3 cut(s) 40, 107, 579
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 52, 734
Eco57I CTGAAG 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 54, 808
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 8 cut(s) 118, 154, 255, 406, 422, 452, 712, 732
FaqI GGGAC 1 cut(s) 65
FatI CATG 8 cut(s) 114, 150, 251, 402, 418, 448, 708, 728
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 3 cut(s) 138, 189, 967
FokI GGATG 1 cut(s) 967
Fsp4HI GCNGC 3 cut(s) 138, 189, 967
FspBI CTAG 2 cut(s) 411, 845
GluI GCNGC 3 cut(s) 138, 189, 967
GsaI CCCAGC 1 cut(s) 514
HaeIII GGCC 4 cut(s) 550, 690, 705, 969
HapII CCGG 2 cut(s) 32, 577
HgaI GACGC 1 cut(s) 285
Hin1II CATG 8 cut(s) 118, 154, 255, 406, 422, 452, 712, 732
HinfI GANTC 4 cut(s) 69, 308, 423, 723
HpaII CCGG 2 cut(s) 32, 577
HphI GGTGA 4 cut(s) 184, 317, 779, 798
Hpy166II GTNNAC 2 cut(s) 454, 842
Hpy188I TCNGA 8 cut(s) 40, 48, 77, 104, 240, 325, 465, 888
Hpy188III TCNNGA 3 cut(s) 16, 640, 856
Hpy8I GTNNAC 2 cut(s) 454, 842
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 5 cut(s) 383, 769, 859, 919, 980
HpyCH4III ACNGT 3 cut(s) 301, 476, 940
HpyCH4IV ACGT 2 cut(s) 124, 222
HpyCH4V TGCA 6 cut(s) 140, 161, 218, 383, 567, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 573, 665
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 124, 222
Hsp92II CATG 8 cut(s) 118, 154, 255, 406, 422, 452, 712, 732
KpnI GGTACC 1 cut(s) 410
Kzo9I GATC 3 cut(s) 40, 107, 579
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 77, 128, 386
Lsp1109I GCAGC 2 cut(s) 124, 200
LweI GCATC 2 cut(s) 592, 945
MabI ACCWGGT 1 cut(s) 808
MaeI CTAG 2 cut(s) 411, 845
MaeII ACGT 2 cut(s) 124, 222
MaeIII GTNAC 3 cut(s) 716, 767, 917
MalI GATC 3 cut(s) 42, 109, 581
MboI GATC 3 cut(s) 40, 107, 579
MboII GAAGA 7 cut(s) 91, 295, 303, 376, 478, 791, 844
MflI RGATCY 2 cut(s) 40, 107
MluCI AATT 4 cut(s) 206, 859, 889, 909
MlyI GAGTC 2 cut(s) 63, 432
MmeI TCCRAC 3 cut(s) 18, 657, 922
MnlI CCTC 7 cut(s) 42, 54, 98, 387, 471, 716, 804
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 3 cut(s) 353, 693, 876
MspI CCGG 2 cut(s) 32, 577
MspR9I CCNGG 2 cut(s) 56, 810
MvaI CCWGG 2 cut(s) 56, 810
MwoI GCNNNNNNNGC 3 cut(s) 137, 573, 665
NcoI CCATGG 1 cut(s) 418
NdeII GATC 3 cut(s) 40, 107, 579
NlaIII CATG 8 cut(s) 118, 154, 255, 406, 422, 452, 712, 732
NlaIV GGNNCC 5 cut(s) 42, 53, 109, 130, 408
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 81
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 308, 723
PkrI GCNGC 3 cut(s) 139, 190, 968
PleI GAGTC 2 cut(s) 63, 431
PpsI GAGTC 2 cut(s) 63, 431
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 54, 808
PspFI CCCAGC 1 cut(s) 510
PspGI CCWGG 2 cut(s) 54, 808
PspN4I GGNNCC 5 cut(s) 42, 53, 109, 130, 408
PspPI GGNCC 2 cut(s) 52, 734
PsuI RGATCY 2 cut(s) 40, 107
RsaI GTAC 5 cut(s) 149, 348, 401, 408, 453
RsaNI GTAC 5 cut(s) 148, 347, 400, 407, 452
Rsr2I CGGWCCG 1 cut(s) 734
RsrII CGGWCCG 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 353, 693, 876
SatI GCNGC 3 cut(s) 138, 189, 967
Sau3AI GATC 3 cut(s) 40, 107, 579
Sau96I GGNCC 2 cut(s) 52, 734
SchI GAGTC 2 cut(s) 63, 432
ScrFI CCNGG 2 cut(s) 56, 810
SexAI ACCWGGT 1 cut(s) 808
SfaNI GCATC 2 cut(s) 592, 945
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 2 cut(s) 52, 734
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 4 cut(s) 206, 859, 889, 909
SsiI CCGC 5 cut(s) 111, 732, 821, 915, 966
SspMI CTAG 2 cut(s) 411, 845
StyD4I CCNGG 2 cut(s) 54, 808
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 301, 476, 940
TaiI ACGT 2 cut(s) 127, 225
TaqI TCGA 4 cut(s) 314, 539, 582, 786
TaqII GACCGA 2 cut(s) 751, 986
TasI AATT 4 cut(s) 206, 859, 889, 909
TatI WGTACW 2 cut(s) 399, 451
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 2 cut(s) 308, 723
Tru1I TTAA 3 cut(s) 353, 693, 876
Tru9I TTAA 3 cut(s) 353, 693, 876
TscAI CASTG 2 cut(s) 168, 691
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 2 cut(s) 137, 188
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 2 cut(s) 240, 1003
TspGWI ACGGA 2 cut(s) 420, 735
TspRI CASTG 2 cut(s) 168, 691
VpaK11BI GGWCC 2 cut(s) 52, 734
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 2 cut(s) 206, 889
XceI RCATGY 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 411, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.