Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006666

Physical Location & Seq

Genomic Coordinates Forward (+)

8276729 .. 8278381

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATGTTCAAAGTGCAAGAGGGCGTGGACCGGCAATGTCCAACAATGTCCAACAAAGTAATACTAGGCAGGGTGCTTGCATATACTGTCATCAAACGGGTCATTCTTCAGGCGATTGCCCTTCCCAATCTTCAGGTCCTCAAAGTGCAAGGCCTCGATCTATGAATGTACAAAGTGGACAAGTATCAACCTCATGTTCTACATGTGGTGCCCCATGTGCTTTACGAACAGCTAATACAACAGCTAACAGAGGAAGAAAATTCTACTCTTGTCAATCGCAGGCGTGCAACTTTTTTGTATGGGAGGATAGCCTTAACAATGATAATGGAGGAAGGGGTTTTCAGCGTGCAAATGTTAGTGCCTCAGCATCTAACCCGACTCGGACTGGTGGCAGCGGTAGAGGTGGCCGGGGTGCAGGAGATGCTGCTGGTGTGAGTTTTGTATCAGCGACTGGTGATCCCGTCTCTGGTAGAAGGTGTTTTGCTTGCGGAGATCCATCACACTTCGCAAATGTTTGCCCGAACCGTGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

179

Amino Acids

18.35

Weight (kDa)

9.48

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_GRF	PF06839	65 - 104	5.6e-11	GRF zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63920
fragaria_vesca	FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710
malus_domestica	MD15G1134700.v1.1
prunus_persica	Prupe.4G275500_v2.0.a1 Prupe.4G275500_v2.0.a1
pyrus_communis	pycom15g12120 pycom15g12150
rosa_chinensis	RchiOBHm_Chr2g0122231
rosa_laevigata	RLG00000018671
rosa_roxburghii	Rroxscaffold_2G00121760
rosa_rugosa	Rorug02G0237200
rosa_samantha	Rh2AG296000 Rh2BG304900 Rh2CG283300 Rh2DG320000
rosa_wichuraiana	Rw1G008520 Rw2G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	2 cut(s)	396, 489
AclWI	GGATC	2 cut(s)	452, 488
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	2 cut(s)	93, 117
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	467, 527
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	2 cut(s)	233, 245
AluI	AGCT	2 cut(s)	233, 245
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	2 cut(s)	452, 488
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	152, 406
ApeKI	GCWGC	2 cut(s)	393, 425
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	29, 137
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	29, 137
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	405, 412
BccI	CCATC	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	394, 426
BlsI	GCNGC	2 cut(s)	395, 427
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	2 cut(s)	29, 137
BmgT120I	GGNCC	2 cut(s)	29, 137
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	377, 412
Bpu10I	CCTNAGC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	409, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 527
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	391, 457
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	409, 526
BseLI	CCNNNNNNNGG	2 cut(s)	467, 527
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	391, 457
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	405, 412
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	154, 408
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	32, 409
BslI	CCNNNNNNNGG	2 cut(s)	467, 527
BsmAI	GTCTC	1 cut(s)	469
BsmBI	CGTCTC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	154, 408
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	158, 457, 493
BspACI	CCGC	2 cut(s)	396, 489
BspANI	GGCC	2 cut(s)	154, 408
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	452, 488
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	391, 457
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	409, 526
BssMI	GATC	3 cut(s)	158, 457, 493
Bst4CI	ACNGT	2 cut(s)	89, 527
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	5 cut(s)	79, 282, 286, 348, 487
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	161, 460, 496
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	158, 457, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 422
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	405, 412
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	154, 408
BtgI	CCRYGG	1 cut(s)	526
Cac8I	GCNNGC	5 cut(s)	79, 282, 286, 348, 487
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	29, 137
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	3 cut(s)	195, 204, 216
CviJI	RGCY	5 cut(s)	154, 233, 245, 312, 408
CviKI_1	RGCY	5 cut(s)	154, 233, 245, 312, 408
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	3 cut(s)	160, 459, 495
DpnII	GATC	3 cut(s)	158, 457, 493
EaeI	YGGCCR	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	29, 137
Eco57I	CTGAAG	2 cut(s)	93, 117
EcoO109I	RGGNCCY	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	3 cut(s)	198, 207, 219
FaiI	YATR	7 cut(s)	83, 85, 164, 196, 205, 217, 301
FatI	CATG	3 cut(s)	194, 203, 215
Fnu4HI	GCNGC	2 cut(s)	394, 426
Fsp4HI	GCNGC	2 cut(s)	394, 426
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	2 cut(s)	394, 426
HaeIII	GGCC	2 cut(s)	154, 408
HapII	CCGG	2 cut(s)	32, 409
Hin1II	CATG	3 cut(s)	198, 207, 219
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	32, 409
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	29, 179
Hpy188I	TCNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	29, 179
HpyAV	CCTTC	3 cut(s)	132, 327, 468
HpyCH4III	ACNGT	2 cut(s)	89, 527
HpyCH4V	TGCA	6 cut(s)	17, 81, 149, 288, 350, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 422
HpyF3I	CTNAG	1 cut(s)	364
Hsp92II	CATG	3 cut(s)	198, 207, 219
Kzo9I	GATC	3 cut(s)	158, 457, 493
Lsp1109I	GCAGC	2 cut(s)	405, 412
LweI	GCATC	2 cut(s)	377, 412
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	160, 459, 495
MboI	GATC	3 cut(s)	158, 457, 493
MboII	GAAGA	3 cut(s)	99, 123, 267
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	2 cut(s)	66, 76
MnlI	CCTC	9 cut(s)	14, 150, 165, 202, 245, 298, 323, 373, 395
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	32, 409
MspR9I	CCNGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	218, 422
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	3 cut(s)	158, 457, 493
NlaIII	CATG	3 cut(s)	198, 207, 219
NlaIV	GGNNCC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	395, 427
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	137
PscI	ACATGT	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	29, 137
PspPPI	RGGWCCY	1 cut(s)	137
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	394, 426
Sau3AI	GATC	3 cut(s)	158, 457, 493
Sau96I	GGNCC	2 cut(s)	29, 137
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	139, 194, 235, 247, 406, 479
SfaNI	GCATC	2 cut(s)	377, 412
SinI	GGWCC	2 cut(s)	29, 137
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	396, 489
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	89, 527
TaqI	TCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	393, 425
TspDTI	ATGAA	2 cut(s)	17, 179
VpaK11BI	GGWCC	2 cut(s)	29, 137
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.