Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

9095205 .. 9096566

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGATTTTTTATTTGGGGGAGAAAAATAAAACTAAAAATGGAAAGGAGAAAAGTCGGTCCATGCAAATGCATAAAATCCTGAAAGGCGCTAACTTTCCTCCACAGCTTCAAACTCCGTTATCTCCAACTCCCAAATTCAAAGTTCTGTTCATCAGAAATTACACTTTCATTTTGCAGATTCCAGAACAAGTTGATGATAAAGTTGTATTGAATCGGCTTATATATATGATGACCTCACTGAGATTTTCAATCTCCTTGGAAACGTTTGATTCTTCAAACAAGTTAAATTCTTCTTTTTGCTACAGTCATGTAAATGTTAGCAGAGCTTGTGTAGTTAATGCTCTGAATTGGGGAAATCGGATTAAGGTTTCTGGGCTCCCTTTCGAATTGTCGGGCACCTCGGAACTGAACCAGATGAGTGAGGAAACCAATTTGAGCTTGGTTGAGGGAAACCCGGAGTTTCGACACGAAAGTGAGAAGGGGTCCGGGGGGCCAAAGAAAGAGAGTAGGAGAGAAAAGGGTTTGAAGTTAAGTTCAAGAAAGAGTAGGTGGGTGAGGGAATTGGAGAATTTGTTTGTGAATGGTGGTGAATTTGATGTTGATTATTCTGTTATTAGCTCTCACTTGAGCTTGGAGCATTGTAACGATATTTTGAGACGGCTAGAGAGGTGTAGTGATGTCAAAGCTCTTAGATTCTTCGAGTGGATGAGAAGCAACGGGAAATTAGAGCGCAACGTGAGCGCTTTTAATTCAGTTTTAAGAGTGATGGGTAGGAGAGAAGATTGGGATGCAGCTGAAAAATTGGTTCAGGAATTGCTTGCTGGTTTGGGAGGTGAGCTGAATTATCAGGTTTTCAACACCCTTATTTATGCGTGTTGTAAGTTGGGGCGCGCTGAGTTGGGAGCCAAGTGGTTTCGAATGATGCTGGATCACAGGATCCAGCCGAACATTGCAACTTTTGGTATGCTAATGGGACTTTACCAGAAGGGTTGGAATGTTGAGGAGGCGGAGTTTACTTTTTCTCAAATGAGGAACTGTGGAATTGTATGTCAATCAGCGTACTCAGCGATCGATCACAATTTACACCCGCATAAACTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

369

Amino Acids

42.26

Weight (kDa)

9.08

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	285 - 325	5.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	894
AciI	CCGC	2 cut(s)	1010, 1091
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	3 cut(s)	934, 939, 947
AcsI	RAATTY	4 cut(s)	137, 289, 571, 593
AfaI	GTAC	1 cut(s)	1064
AfeI	AGCGCT	1 cut(s)	745
AgsI	TTSAA	8 cut(s)	113, 142, 214, 252, 279, 529, 540, 859
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	8 cut(s)	109, 329, 441, 621, 633, 689, 797, 841
AluI	AGCT	8 cut(s)	109, 329, 441, 621, 633, 689, 797, 841
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	934, 939, 947
Aor51HI	AGCGCT	1 cut(s)	745
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	4 cut(s)	137, 289, 571, 593
AspLEI	GCGC	5 cut(s)	92, 735, 746, 894, 896
AspS9I	GGNCC	3 cut(s)	60, 486, 494
AsuC2I	CCSGG	2 cut(s)	458, 490
AsuHPI	GGTGA	3 cut(s)	568, 602, 848
AsuII	TTCGAA	2 cut(s)	387, 919
AvaII	GGWCC	2 cut(s)	60, 486
BaeGI	GKGCMC	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	806
BccI	CCATC	1 cut(s)	763
BceAI	ACGGC	1 cut(s)	677
BcnI	CCSGG	2 cut(s)	458, 490
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	2 cut(s)	93, 747
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
Bme1390I	CCNGG	2 cut(s)	458, 490
Bme18I	GGWCC	2 cut(s)	60, 486
BmgT120I	GGNCC	3 cut(s)	60, 486, 494
BmiI	GGNNCC	6 cut(s)	380, 400, 487, 495, 907, 941
BmrFI	CCNGG	2 cut(s)	458, 490
BmsI	GCATC	2 cut(s)	781, 915
Bpu14I	TTCGAA	2 cut(s)	387, 919
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	2 cut(s)	458, 490
Bsa29I	ATCGAT	1 cut(s)	1074
BsaJI	CCNNGG	3 cut(s)	258, 402, 489
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 998, 1028
Bse3DI	GCAATG	1 cut(s)	951
BseCI	ATCGAT	1 cut(s)	1074
BseDI	CCNNGG	3 cut(s)	258, 402, 489
BseGI	GGATG	2 cut(s)	714, 796
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	233, 888, 1080
BsePI	GCGCGC	1 cut(s)	892
BseRI	GAGGAG	1 cut(s)	1019
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	894
Bsh1285I	CGRYCG	1 cut(s)	1074
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	1074
BsiEI	CGRYCG	1 cut(s)	1074
BsiSI	CCGG	2 cut(s)	458, 489
BslFI	GGGAC	1 cut(s)	990
BsmAI	GTCTC	1 cut(s)	652
BsmBI	CGTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	990
BsnI	GGCC	1 cut(s)	496
Bsp119I	TTCGAA	2 cut(s)	387, 919
Bsp1286I	GDGCHC	2 cut(s)	381, 401
Bsp143I	GATC	4 cut(s)	931, 939, 1071, 1075
BspACI	CCGC	2 cut(s)	1010, 1091
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	3 cut(s)	234, 889, 1079
BspDI	ATCGAT	1 cut(s)	1074
BspFNI	CGCG	1 cut(s)	894
BspLI	GGNNCC	6 cut(s)	380, 400, 487, 495, 907, 941
BspPI	GGATC	3 cut(s)	934, 939, 947
BspT104I	TTCGAA	2 cut(s)	387, 919
BspT107I	GGYRCC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	951
BssECI	CCNNGG	3 cut(s)	258, 402, 489
BssHII	GCGCGC	1 cut(s)	892
BssMI	GATC	4 cut(s)	931, 939, 1071, 1075
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	308, 1040
BstBI	TTCGAA	2 cut(s)	387, 919
BstC8I	GCNNGC	2 cut(s)	822, 894
BstDEI	CTNAG	4 cut(s)	242, 692, 897, 1066
BstF5I	GGATG	2 cut(s)	714, 796
BstFNI	CGCG	1 cut(s)	894
BstH2I	RGCGCY	2 cut(s)	93, 747
BstHHI	GCGC	5 cut(s)	92, 735, 746, 894, 896
BstKTI	GATC	4 cut(s)	934, 942, 1074, 1078
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	4 cut(s)	931, 939, 1071, 1075
BstMCI	CGRYCG	1 cut(s)	1074
BstMWI	GCNNNNNNNGC	2 cut(s)	741, 1067
BstSCI	CCNGG	2 cut(s)	456, 488
BstSFI	CTRYAG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	939
Bsu15I	ATCGAT	1 cut(s)	1074
BsuRI	GGCC	1 cut(s)	496
BsuTUI	ATCGAT	1 cut(s)	1074
BtsCI	GGATG	2 cut(s)	714, 796
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	822, 894
CfoI	GCGC	5 cut(s)	92, 735, 746, 894, 896
Cfr13I	GGNCC	3 cut(s)	60, 486, 494
ClaI	ATCGAT	1 cut(s)	1074
Csp6I	GTAC	1 cut(s)	1063
CviAII	CATG	2 cut(s)	64, 311
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	4 cut(s)	242, 692, 897, 1066
DpnI	GATC	4 cut(s)	933, 941, 1073, 1077
DpnII	GATC	4 cut(s)	931, 939, 1071, 1075
EciI	GGCGGA	1 cut(s)	1025
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	60, 486
Eco47III	AGCGCT	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	652
FaeI	CATG	2 cut(s)	67, 314
FaqI	GGGAC	1 cut(s)	990
FatI	CATG	2 cut(s)	63, 310
FauI	CCCGC	1 cut(s)	1098
Fnu4HI	GCNGC	1 cut(s)	795
FokI	GGATG	2 cut(s)	721, 803
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	5 cut(s)	91, 734, 745, 893, 895
GluI	GCNGC	1 cut(s)	795
HaeII	RGCGCY	2 cut(s)	93, 747
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	2 cut(s)	458, 489
HhaI	GCGC	5 cut(s)	92, 735, 746, 894, 896
Hin1II	CATG	2 cut(s)	67, 314
Hin6I	GCGC	5 cut(s)	90, 733, 744, 892, 894
HinP1I	GCGC	5 cut(s)	90, 733, 744, 892, 894
HinfI	GANTC	4 cut(s)	181, 214, 272, 696
HpaII	CCGG	2 cut(s)	458, 489
HphI	GGTGA	3 cut(s)	568, 602, 848
Hpy166II	GTNNAC	1 cut(s)	1017
Hpy188I	TCNGA	4 cut(s)	158, 348, 363, 406
Hpy188III	TCNNGA	4 cut(s)	82, 185, 540, 812
Hpy8I	GTNNAC	1 cut(s)	1017
HpyAV	CCTTC	2 cut(s)	475, 982
HpyCH4III	ACNGT	2 cut(s)	308, 1040
HpyCH4IV	ACGT	2 cut(s)	266, 738
HpyCH4V	TGCA	5 cut(s)	67, 73, 178, 794, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	741, 1067
HpyF3I	CTNAG	4 cut(s)	242, 692, 897, 1066
HpySE526I	ACGT	2 cut(s)	266, 738
Hsp92II	CATG	2 cut(s)	67, 314
HspAI	GCGC	5 cut(s)	90, 733, 744, 892, 894
Kzo9I	GATC	4 cut(s)	931, 939, 1071, 1075
LmnI	GCTCC	3 cut(s)	384, 637, 905
Lsp1109I	GCAGC	1 cut(s)	806
LweI	GCATC	2 cut(s)	781, 915
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	2 cut(s)	266, 738
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	4 cut(s)	933, 941, 1073, 1077
MboI	GATC	4 cut(s)	931, 939, 1071, 1075
MboII	GAAGA	4 cut(s)	267, 285, 691, 794
MflI	RGATCY	1 cut(s)	939
MhlI	GDGCHC	2 cut(s)	381, 401
MmeI	TCCRAC	2 cut(s)	152, 974
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	6 cut(s)	287, 339, 366, 533, 750, 761
MslI	CAYNNNNRTG	3 cut(s)	68, 315, 474
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	2 cut(s)	458, 489
MspR9I	CCNGG	2 cut(s)	458, 490
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	2 cut(s)	741, 1067
NciI	CCSGG	2 cut(s)	458, 490
NdeII	GATC	4 cut(s)	931, 939, 1071, 1075
NlaIII	CATG	2 cut(s)	67, 314
NlaIV	GGNNCC	6 cut(s)	380, 400, 487, 495, 907, 941
NsiI	ATGCAT	1 cut(s)	75
NspV	TTCGAA	2 cut(s)	387, 919
OliI	CACNNNNGTG	1 cut(s)	474
PauI	GCGCGC	1 cut(s)	892
PfeI	GAWTC	4 cut(s)	181, 214, 272, 696
PkrI	GCNGC	1 cut(s)	796
Ple19I	CGATCG	1 cut(s)	1074
Psp1406I	AACGTT	1 cut(s)	266
PspN4I	GGNNCC	6 cut(s)	380, 400, 487, 495, 907, 941
PspPI	GGNCC	3 cut(s)	60, 486, 494
PsuI	RGATCY	1 cut(s)	939
PteI	GCGCGC	1 cut(s)	892
PvuI	CGATCG	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
RseI	CAYNNNNRTG	3 cut(s)	68, 315, 474
SaqAI	TTAA	6 cut(s)	287, 339, 366, 533, 750, 761
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	4 cut(s)	931, 939, 1071, 1075
Sau96I	GGNCC	3 cut(s)	60, 486, 494
ScrFI	CCNGG	2 cut(s)	458, 490
SduI	GDGCHC	2 cut(s)	381, 401
SfaNI	GCATC	2 cut(s)	781, 915
SfcI	CTRYAG	1 cut(s)	304
SfuI	TTCGAA	2 cut(s)	387, 919
SinI	GGWCC	2 cut(s)	60, 486
SmiMI	CAYNNNNRTG	3 cut(s)	68, 315, 474
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
SsiI	CCGC	2 cut(s)	1010, 1091
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	456, 488
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	308, 1040
TaiI	ACGT	2 cut(s)	269, 741
TaqI	TCGA	5 cut(s)	387, 466, 702, 919, 1074
TaqII	GACCGA	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	181, 214, 272, 696
Tru1I	TTAA	6 cut(s)	287, 339, 366, 533, 750, 761
Tru9I	TTAA	6 cut(s)	287, 339, 366, 533, 750, 761
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	794
TspDTI	ATGAA	2 cut(s)	142, 160
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	60, 486
XapI	RAATTY	4 cut(s)	137, 289, 571, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.